jgi.p|Nanoce1779_2|538802, mRNA_2543 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|538802
Unique Name	mRNA_2543
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2017
Alignment location	scaffold_5:613768..615784 -

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Properties


Property Name	Value
TranscriptId	538888
Track	FilteredModels2
ProteinId	538802

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:613768..615784 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|538802	gene_2543	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|538802	mRNA_2543-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2543	CDS_2543	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:613768..615784-
coding sequence from alignment at scaffold_5:613768..615784-

mRNA sequence

>mRNA_2543 ID=mRNA_2543|Name=jgi.p|Nanoce1779_2|538802|organism=Nannochloropsis oceanica|type=mRNA|length=2017bp
CCCGAGCTCCTCCCGCAGCTTTCTATTCCGGTCATAGTCGCAGTATCTAT
AGACCCATTGTCTTGTGTTGCGTGTGTATGGGTGGAGGGTTTAGGCAAGT
GAGTTGGGGATGGAGAAGGTTGGGGGAGACGCTCGGCCCATACATGGTCC
GGGAGGTTCTTCTTTTTGACTTTTTCCCTCCTAAACCATCCCCCCCGGCC
TGACGAGCCTTTAAAAACTATTGATTTATCACATGTTTCGATACATGCGA
GTAGGCCAAACCATGATCAACATCGAACTCAAAAAGATACATCGATCTCA
CAAAAATTAACATAATTATTGCGAGTCAACGGCAATTGAAATAAAGATAC
GGACGGGATCTTCCCCCCTCCTGTCCTCCCATGTCCTGTCGAACACGAAA
CAAGGGCAACAACCCACGCGCGGTCTGAATGAGCTTGATTGTAACAAACA
CGATGGCGTCCTAGCAGTTGCCGCTCTTATGCTATGTCTCCATTTTGCCA
ATCGTGCGAGTCCTCCAACCTCATACTTGAAGCAGCGACCCCCTTGCTTT
TGGAGCATCCATCACACCTCCTCAACCAATCACCGTTCACTGCAATACCT
ACACAAACAGGCATTCTAAAGTCGTTGCGCTTGACATGTCTCTATTGAAA
GCTTTTTTCTTCTGGGCCTTGCTGGGCTGTGCGGACGCTTTTGTTGGACC
GTCAGTCGCCCCTTTCCGGCCCGCTGCGTCATGGTCCTCCTGTGCTCAGC
ACGACAGCGGCCGTGGCTTGTATTTGAGCGCTGCAGTTCAGCGCCCCACG
GTCCCAAAAGCCGTATGTGCTACTTCTTCGGGCGGTGCACCGGCGACCGG
GCCGACCTCTTTGGGACCTTTGCCTCCACTGGAAGGCTTTGACCCACGGG
GAGGAAACATCCCTGCTGTCGGCACCAACAGCAAAGGCGGCGTGTGGGTG
CCGCAAATGGCGCGGCCCCGGCGAAACCGCAAGTCTGAGGCTGTGCGTGG
CATGGTACGGGAGAATATTGTGCTGCCCCGCAACTTTATCTACCCGCTTT
TCATCCACGAAGAGACCTATGACACAGAGATTTCCTCCATGCCTGGCCAA
AAGCGTTTCAGCCTAGCGGGCATGATGGCCGAGGTGGCTGAGTCCTGGCA
ATACGGTGTCAAGACGTTCGTGCTTTTTCCCAAAGTCGACGACAGCCTCA
AGACAAATGACGGTCGGGAGGCTTATAACAAGGCGGGCATTGTCCCGCGG
GCGATTGGCATGATTAAGGAGAGCTTCCCCGAGGCAACCGTTATGACAGA
CGTAGCGCTGGACCCATACTCGGACCAGGGCCACGACGGGATCGTACTGA
ATGGAAAGATCATCAATGATGAAACTATTGAGCAGCTGTGCAAGCAGGCC
ATTTGCCAGGCCCGCGCTGGCGCTGACATAGTGGCGCCCAGCGACATGAT
GGACGGACGCGTGGGGGCGCTGCGGCGGGCCCTGGACTCTGAGGGCTTTA
CAGATGTCTCCATCATGGCCTACACAGCTAAATATGCATCCGCCTACTAT
GGTCCATTCCGGGACGCCTTGGACTCACACCCAGGCTTTGGGGACAAGAA
GACATACCAACAAGACCCCGCCAACGGTCGCGAGGCCCTTTTGGAGGCCG
CACTTGATGCTGCCGAAGGTGCCGATTTCCTCATGGTTAAGCCCGGCATG
CCATACCTGGATGTCATCCTTCGCCTAAAACAGGCATCTAATCTACCCAT
CGCTGCTTATCACGTGTCGGGCGAATACGCCATGCTCAAGGCCGCTGCTG
AGAAGGGCTGGCTCAACGAAAAGGACGTTGTGCTCGAGACGATGACTTGT
TTTAAACGCGCTGGCTGTGACATCATCCTTACATATTACGCCAAGCAGGC
GGCGAAATGGTTGGTCGAGGATGGGCTGATTTAAAGTGCAAGAAATCCTC
GGTGTGTTTGAATCTGCAAGCCGATTAAAGAAAAAAACAAGAGTTCGGCA
ACGGGCACACATTTCAA

protein sequence of jgi.p|Nanoce1779_2|538802

>mRNA_2543-protein ID=mRNA_2543-protein|Name=jgi.p|Nanoce1779_2|538802|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MSLLKAFFFWALLGCADAFVGPSVAPFRPAASWSSCAQHDSGRGLYLSAA
VQRPTVPKAVCATSSGGAPATGPTSLGPLPPLEGFDPRGGNIPAVGTNSK
GGVWVPQMARPRRNRKSEAVRGMVRENIVLPRNFIYPLFIHEETYDTEIS
SMPGQKRFSLAGMMAEVAESWQYGVKTFVLFPKVDDSLKTNDGREAYNKA
GIVPRAIGMIKESFPEATVMTDVALDPYSDQGHDGIVLNGKIINDETIEQ
LCKQAICQARAGADIVAPSDMMDGRVGALRRALDSEGFTDVSIMAYTAKY
ASAYYGPFRDALDSHPGFGDKKTYQQDPANGREALLEAALDAAEGADFLM
VKPGMPYLDVILRLKQASNLPIAAYHVSGEYAMLKAAAEKGWLNEKDVVL
ETMTCFKRAGCDIILTYYAKQAAKWLVEDGLI*

mRNA from alignment at scaffold_5:613768..615784-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2543 ID=mRNA_2543|Name=jgi.p|Nanoce1779_2|538802|organism=Nannochloropsis oceanica|type=mRNA|length=2017bp|location=Sequence derived from alignment at scaffold_5:613768..615784- (Nannochloropsis oceanica)
CCCGAGCTCCTCCCGCAGCTTTCTATTCCGGTCATAGTCGCAGTATCTAT
AGACCCATTGTCTTGTGTTGCGTGTGTATGGGTGGAGGGTTTAGGCAAGT
GAGTTGGGGATGGAGAAGGTTGGGGGAGACGCTCGGCCCATACATGGTCC
GGGAGGTTCTTCTTTTTGACTTTTTCCCTCCTAAACCATCCCCCCCGGCC
TGACGAGCCTTTAAAAACTATTGATTTATCACATGTTTCGATACATGCGA
GTAGGCCAAACCATGATCAACATCGAACTCAAAAAGATACATCGATCTCA
CAAAAATTAACATAATTATTGCGAGTCAACGGCAATTGAAATAAAGATAC
GGACGGGATCTTCCCCCCTCCTGTCCTCCCATGTCCTGTCGAACACGAAA
CAAGGGCAACAACCCACGCGCGGTCTGAATGAGCTTGATTGTAACAAACA
CGATGGCGTCCTAGCAGTTGCCGCTCTTATGCTATGTCTCCATTTTGCCA
ATCGTGCGAGTCCTCCAACCTCATACTTGAAGCAGCGACCCCCTTGCTTT
TGGAGCATCCATCACACCTCCTCAACCAATCACCGTTCACTGCAATACCT
ACACAAACAGGCATTCTAAAGTCGTTGCGCTTGACATGTCTCTATTGAAA
GCTTTTTTCTTCTGGGCCTTGCTGGGCTGTGCGGACGCTTTTGTTGGACC
GTCAGTCGCCCCTTTCCGGCCCGCTGCGTCATGGTCCTCCTGTGCTCAGC
ACGACAGCGGCCGTGGCTTGTATTTGAGCGCTGCAGTTCAGCGCCCCACG
GTCCCAAAAGCCGTATGTGCTACTTCTTCGGGCGGTGCACCGGCGACCGG
GCCGACCTCTTTGGGACCTTTGCCTCCACTGGAAGGCTTTGACCCACGGG
GAGGAAACATCCCTGCTGTCGGCACCAACAGCAAAGGCGGCGTGTGGGTG
CCGCAAATGGCGCGGCCCCGGCGAAACCGCAAGTCTGAGGCTGTGCGTGG
CATGGTACGGGAGAATATTGTGCTGCCCCGCAACTTTATCTACCCGCTTT
TCATCCACGAAGAGACCTATGACACAGAGATTTCCTCCATGCCTGGCCAA
AAGCGTTTCAGCCTAGCGGGCATGATGGCCGAGGTGGCTGAGTCCTGGCA
ATACGGTGTCAAGACGTTCGTGCTTTTTCCCAAAGTCGACGACAGCCTCA
AGACAAATGACGGTCGGGAGGCTTATAACAAGGCGGGCATTGTCCCGCGG
GCGATTGGCATGATTAAGGAGAGCTTCCCCGAGGCAACCGTTATGACAGA
CGTAGCGCTGGACCCATACTCGGACCAGGGCCACGACGGGATCGTACTGA
ATGGAAAGATCATCAATGATGAAACTATTGAGCAGCTGTGCAAGCAGGCC
ATTTGCCAGGCCCGCGCTGGCGCTGACATAGTGGCGCCCAGCGACATGAT
GGACGGACGCGTGGGGGCGCTGCGGCGGGCCCTGGACTCTGAGGGCTTTA
CAGATGTCTCCATCATGGCCTACACAGCTAAATATGCATCCGCCTACTAT
GGTCCATTCCGGGACGCCTTGGACTCACACCCAGGCTTTGGGGACAAGAA
GACATACCAACAAGACCCCGCCAACGGTCGCGAGGCCCTTTTGGAGGCCG
CACTTGATGCTGCCGAAGGTGCCGATTTCCTCATGGTTAAGCCCGGCATG
CCATACCTGGATGTCATCCTTCGCCTAAAACAGGCATCTAATCTACCCAT
CGCTGCTTATCACGTGTCGGGCGAATACGCCATGCTCAAGGCCGCTGCTG
AGAAGGGCTGGCTCAACGAAAAGGACGTTGTGCTCGAGACGATGACTTGT
TTTAAACGCGCTGGCTGTGACATCATCCTTACATATTACGCCAAGCAGGC
GGCGAAATGGTTGGTCGAGGATGGGCTGATTTAAAGTGCAAGAAATCCTC
GGTGTGTTTGAATCTGCAAGCCGATTAAAGAAAAAAACAAGAGTTCGGCA
ACGGGCACACATTTCAA

Coding sequence (CDS) from alignment at scaffold_5:613768..615784-

>mRNA_2543 ID=mRNA_2543|Name=jgi.p|Nanoce1779_2|538802|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at scaffold_5:613768..615784- (Nannochloropsis oceanica)
ATGTCTCTATTGAAAGCTTTTTTCTTCTGGGCCTTGCTGGGCTGTGCGGA
CGCTTTTGTTGGACCGTCAGTCGCCCCTTTCCGGCCCGCTGCGTCATGGT
CCTCCTGTGCTCAGCACGACAGCGGCCGTGGCTTGTATTTGAGCGCTGCA
GTTCAGCGCCCCACGGTCCCAAAAGCCGTATGTGCTACTTCTTCGGGCGG
TGCACCGGCGACCGGGCCGACCTCTTTGGGACCTTTGCCTCCACTGGAAG
GCTTTGACCCACGGGGAGGAAACATCCCTGCTGTCGGCACCAACAGCAAA
GGCGGCGTGTGGGTGCCGCAAATGGCGCGGCCCCGGCGAAACCGCAAGTC
TGAGGCTGTGCGTGGCATGGTACGGGAGAATATTGTGCTGCCCCGCAACT
TTATCTACCCGCTTTTCATCCACGAAGAGACCTATGACACAGAGATTTCC
TCCATGCCTGGCCAAAAGCGTTTCAGCCTAGCGGGCATGATGGCCGAGGT
GGCTGAGTCCTGGCAATACGGTGTCAAGACGTTCGTGCTTTTTCCCAAAG
TCGACGACAGCCTCAAGACAAATGACGGTCGGGAGGCTTATAACAAGGCG
GGCATTGTCCCGCGGGCGATTGGCATGATTAAGGAGAGCTTCCCCGAGGC
AACCGTTATGACAGACGTAGCGCTGGACCCATACTCGGACCAGGGCCACG
ACGGGATCGTACTGAATGGAAAGATCATCAATGATGAAACTATTGAGCAG
CTGTGCAAGCAGGCCATTTGCCAGGCCCGCGCTGGCGCTGACATAGTGGC
GCCCAGCGACATGATGGACGGACGCGTGGGGGCGCTGCGGCGGGCCCTGG
ACTCTGAGGGCTTTACAGATGTCTCCATCATGGCCTACACAGCTAAATAT
GCATCCGCCTACTATGGTCCATTCCGGGACGCCTTGGACTCACACCCAGG
CTTTGGGGACAAGAAGACATACCAACAAGACCCCGCCAACGGTCGCGAGG
CCCTTTTGGAGGCCGCACTTGATGCTGCCGAAGGTGCCGATTTCCTCATG
GTTAAGCCCGGCATGCCATACCTGGATGTCATCCTTCGCCTAAAACAGGC
ATCTAATCTACCCATCGCTGCTTATCACGTGTCGGGCGAATACGCCATGC
TCAAGGCCGCTGCTGAGAAGGGCTGGCTCAACGAAAAGGACGTTGTGCTC
GAGACGATGACTTGTTTTAAACGCGCTGGCTGTGACATCATCCTTACATA
TTACGCCAAGCAGGCGGCGAAATGGTTGGTCGAGGATGGGCTGATTTAA

Synonyms

Publications