jgi.p|Nanoce1779_2|525286, mRNA_2388 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525286
Unique NamemRNA_2388
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1182
Alignment locationscaffold_5:216633..217814 -

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Properties
Property NameValue
TranscriptId525372
TrackFilteredModels2
ProteinId525286
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:216633..217814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525286gene_2388Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2388CDS_2388Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525286mRNA_2388-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2388 ID=mRNA_2388|Name=jgi.p|Nanoce1779_2|525286|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp
ATGGTTAGCCCTCTCAAGGCTGCCGCTGGCTCTCTCAGCCCTAGTAAAGC
TACCAAATCCTCGGCCGGCACCGCCGCTAACACCTCCAATACCCTCAAAA
AAGACGACACGGACGAGGATGAAGAAATCGACGAGCTTAAACGCCGGCTC
TCTGAAGGCCTGTCCTTAAAATACGATGCAGGTGGCGAGCATTGCCCCCA
GTACTCCCAAAAACAGGTCGATCTCCTTCTTGAAACACGATTGGAAGAAG
TTAAGAACACGCTCCTTGCCTCCCATCTAGCAGCACAAGCCTCAGAGAAG
ACCAAGTGGGAGGCTAGGGTCAAGGCATCCGAGGAGGAGGCGACTCGATG
GAGAGTCCAATGCGAAATATTCGAGAAGGAATTGTCGGCGGAGGTGAGTA
GTGTTGAAGGGGCTTTCGCGGCGCGGTTAAAAGAAACGGAATCTGATTTA
ATGTCAAAAGAGATTCAATTGAAAGCAGTGACAGCCCAGCTGGCCGATAT
GCAGGCACGGACGACAGCCGCAGAGAAAGCGGCGGAGGAGTGTAGAAGGA
GGGTGGAGGAAGCGGGGCAGAAGGAGGAAAGGCTGTTGAGAGACGTCGCC
GAGAAGCTGGAGCGGGAGAAGGCTCGAAGAGTAAAGGATGTGATAGAGAT
GAAGGAGAGGGTGGCAAAGAGGGCTCAAGAACAATTTGCGGTGGCGCAGC
AGCAATTTAACTCGTTGGAAAAAGCCTTGAAGGAGAAGGAGGGGGAGGCC
TCGCACCTCGCGGGGGAAGTGGAGAGGGCACAGGCTGAGGCTACGGAGGC
GCTGCGGCAGAAGGAGAAAGCTGTATCGCAACTGGCGGCGATAGAAGCGG
ATATGGCGTCGGTGAGAGCGGCGGCGGGTAGGAAGGAGGAGGAAATGGAA
CGACAGGCATGCGTGGCGGAGGGGAAGGTGGTGGAGTTGAAAGGGGCTCT
GGAGAAGGCGCACGTAGAAAAAGCGTTGGCGATTAAGGATAGAGAGCAGG
CATATGAGAGCCTGTCGAGGACGGCGGTCTCATTACAGGAGCATAAGAGG
AAGGCGGAAGAATTTGAGGAGAAATATGTGAGTCTAGTGCCCAAGGCGAG
GGAGCATGAGACCATGTGTGAGGAGCTGCTGGTGATGGTGGAGGACCTGA
ATCAGAAGTTGGCGGGAGGAGGGGGCAAATAG
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protein sequence of jgi.p|Nanoce1779_2|525286

>mRNA_2388-protein ID=mRNA_2388-protein|Name=jgi.p|Nanoce1779_2|525286|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MVSPLKAAAGSLSPSKATKSSAGTAANTSNTLKKDDTDEDEEIDELKRRL
SEGLSLKYDAGGEHCPQYSQKQVDLLLETRLEEVKNTLLASHLAAQASEK
TKWEARVKASEEEATRWRVQCEIFEKELSAEVSSVEGAFAARLKETESDL
MSKEIQLKAVTAQLADMQARTTAAEKAAEECRRRVEEAGQKEERLLRDVA
EKLEREKARRVKDVIEMKERVAKRAQEQFAVAQQQFNSLEKALKEKEGEA
SHLAGEVERAQAEATEALRQKEKAVSQLAAIEADMASVRAAAGRKEEEME
RQACVAEGKVVELKGALEKAHVEKALAIKDREQAYESLSRTAVSLQEHKR
KAEEFEEKYVSLVPKAREHETMCEELLVMVEDLNQKLAGGGGK*
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mRNA from alignment at scaffold_5:216633..217814-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2388 ID=mRNA_2388|Name=jgi.p|Nanoce1779_2|525286|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp|location=Sequence derived from alignment at scaffold_5:216633..217814- (Nannochloropsis oceanica)
ATGGTTAGCCCTCTCAAGGCTGCCGCTGGCTCTCTCAGCCCTAGTAAAGC
TACCAAATCCTCGGCCGGCACCGCCGCTAACACCTCCAATACCCTCAAAA
AAGACGACACGGACGAGGATGAAGAAATCGACGAGCTTAAACGCCGGCTC
TCTGAAGGCCTGTCCTTAAAATACGATGCAGGTGGCGAGCATTGCCCCCA
GTACTCCCAAAAACAGGTCGATCTCCTTCTTGAAACACGATTGGAAGAAG
TTAAGAACACGCTCCTTGCCTCCCATCTAGCAGCACAAGCCTCAGAGAAG
ACCAAGTGGGAGGCTAGGGTCAAGGCATCCGAGGAGGAGGCGACTCGATG
GAGAGTCCAATGCGAAATATTCGAGAAGGAATTGTCGGCGGAGGTGAGTA
GTGTTGAAGGGGCTTTCGCGGCGCGGTTAAAAGAAACGGAATCTGATTTA
ATGTCAAAAGAGATTCAATTGAAAGCAGTGACAGCCCAGCTGGCCGATAT
GCAGGCACGGACGACAGCCGCAGAGAAAGCGGCGGAGGAGTGTAGAAGGA
GGGTGGAGGAAGCGGGGCAGAAGGAGGAAAGGCTGTTGAGAGACGTCGCC
GAGAAGCTGGAGCGGGAGAAGGCTCGAAGAGTAAAGGATGTGATAGAGAT
GAAGGAGAGGGTGGCAAAGAGGGCTCAAGAACAATTTGCGGTGGCGCAGC
AGCAATTTAACTCGTTGGAAAAAGCCTTGAAGGAGAAGGAGGGGGAGGCC
TCGCACCTCGCGGGGGAAGTGGAGAGGGCACAGGCTGAGGCTACGGAGGC
GCTGCGGCAGAAGGAGAAAGCTGTATCGCAACTGGCGGCGATAGAAGCGG
ATATGGCGTCGGTGAGAGCGGCGGCGGGTAGGAAGGAGGAGGAAATGGAA
CGACAGGCATGCGTGGCGGAGGGGAAGGTGGTGGAGTTGAAAGGGGCTCT
GGAGAAGGCGCACGTAGAAAAAGCGTTGGCGATTAAGGATAGAGAGCAGG
CATATGAGAGCCTGTCGAGGACGGCGGTCTCATTACAGGAGCATAAGAGG
AAGGCGGAAGAATTTGAGGAGAAATATGTGAGTCTAGTGCCCAAGGCGAG
GGAGCATGAGACCATGTGTGAGGAGCTGCTGGTGATGGTGGAGGACCTGA
ATCAGAAGTTGGCGGGAGGAGGGGGCAAATAG
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Coding sequence (CDS) from alignment at scaffold_5:216633..217814-

>mRNA_2388 ID=mRNA_2388|Name=jgi.p|Nanoce1779_2|525286|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_5:216633..217814- (Nannochloropsis oceanica)
ATGGTTAGCCCTCTCAAGGCTGCCGCTGGCTCTCTCAGCCCTAGTAAAGC
TACCAAATCCTCGGCCGGCACCGCCGCTAACACCTCCAATACCCTCAAAA
AAGACGACACGGACGAGGATGAAGAAATCGACGAGCTTAAACGCCGGCTC
TCTGAAGGCCTGTCCTTAAAATACGATGCAGGTGGCGAGCATTGCCCCCA
GTACTCCCAAAAACAGGTCGATCTCCTTCTTGAAACACGATTGGAAGAAG
TTAAGAACACGCTCCTTGCCTCCCATCTAGCAGCACAAGCCTCAGAGAAG
ACCAAGTGGGAGGCTAGGGTCAAGGCATCCGAGGAGGAGGCGACTCGATG
GAGAGTCCAATGCGAAATATTCGAGAAGGAATTGTCGGCGGAGGTGAGTA
GTGTTGAAGGGGCTTTCGCGGCGCGGTTAAAAGAAACGGAATCTGATTTA
ATGTCAAAAGAGATTCAATTGAAAGCAGTGACAGCCCAGCTGGCCGATAT
GCAGGCACGGACGACAGCCGCAGAGAAAGCGGCGGAGGAGTGTAGAAGGA
GGGTGGAGGAAGCGGGGCAGAAGGAGGAAAGGCTGTTGAGAGACGTCGCC
GAGAAGCTGGAGCGGGAGAAGGCTCGAAGAGTAAAGGATGTGATAGAGAT
GAAGGAGAGGGTGGCAAAGAGGGCTCAAGAACAATTTGCGGTGGCGCAGC
AGCAATTTAACTCGTTGGAAAAAGCCTTGAAGGAGAAGGAGGGGGAGGCC
TCGCACCTCGCGGGGGAAGTGGAGAGGGCACAGGCTGAGGCTACGGAGGC
GCTGCGGCAGAAGGAGAAAGCTGTATCGCAACTGGCGGCGATAGAAGCGG
ATATGGCGTCGGTGAGAGCGGCGGCGGGTAGGAAGGAGGAGGAAATGGAA
CGACAGGCATGCGTGGCGGAGGGGAAGGTGGTGGAGTTGAAAGGGGCTCT
GGAGAAGGCGCACGTAGAAAAAGCGTTGGCGATTAAGGATAGAGAGCAGG
CATATGAGAGCCTGTCGAGGACGGCGGTCTCATTACAGGAGCATAAGAGG
AAGGCGGAAGAATTTGAGGAGAAATATGTGAGTCTAGTGCCCAAGGCGAG
GGAGCATGAGACCATGTGTGAGGAGCTGCTGGTGATGGTGGAGGACCTGA
ATCAGAAGTTGGCGGGAGGAGGGGGCAAATAG
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Synonyms
Publications