jgi.p|Nanoce1779_2|581045, mRNA_2648 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581045
Unique NamemRNA_2648
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length581
Alignment locationscaffold_5:843376..843956 +

Link to JBrowse

Properties
Property NameValue
TranscriptId581131
TrackFilteredModels2
ProteinId581045
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:843376..843956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581045gene_2648Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581045mRNA_2648-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2648CDS_2648Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2648 ID=mRNA_2648|Name=jgi.p|Nanoce1779_2|581045|organism=Nannochloropsis oceanica|type=mRNA|length=581bp
AAACCACCCGTCCTGTTCCAAGATGTCCATCGTCTCCTCCATCGCACTCT
CGGACGCCAACCATTCATCCAAATAAGCCAAACCCCTCTGGTGCTCCTCC
GCTGTGAAACATGGACCCAGTTCCTCAAGCGACACATGGCACTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCCTCGCCTTCCCTCTCCAG
CCTTCTCCTCATCCTTCCTGTACAAGACATGCGCAACTGCAGCTTCCCAG
GTGGTGATATAGTAAGCTTTCTCGCCCACATTCTCGTCACCACTTGCAAA
GTGTCTCAACAAATACAAAGACGAAAACACGTCGGGACAGTCCGCGTGGA
CTAAGGCGTAGACCAGCAAGGGGAAAAGAACATCAGCCGGCAATGATTGT
TGTGGGGTCAAGGTTAGGCGTTTCTTTCCCTCCTTCCCTCCTCCTGTTCC
ATTTCCTACTATTGCTTTTGCTGCTGTCCCTGACGCTGCTGCTGTCGCAG
CTACCTCTCCTTCATCCCCTCCATCTCCTCCTTCTCCATCTTTTTCTCCA
CCCACTCCTGCTGCTGCTGCTGCTGCTGCTG
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protein sequence of jgi.p|Nanoce1779_2|581045

>mRNA_2648-protein ID=mRNA_2648-protein|Name=jgi.p|Nanoce1779_2|581045|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MALLLLLLLLLLLLPPSPSLSSLLLILPVQDMRNCSFPGGDIVSFLAHIL
VTTCKVSQQIQRRKHVGTVRVD*
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mRNA from alignment at scaffold_5:843376..843956+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2648 ID=mRNA_2648|Name=jgi.p|Nanoce1779_2|581045|organism=Nannochloropsis oceanica|type=mRNA|length=581bp|location=Sequence derived from alignment at scaffold_5:843376..843956+ (Nannochloropsis oceanica)
AAACCACCCGTCCTGTTCCAAGATGTCCATCGTCTCCTCCATCGCACTCT
CGGACGCCAACCATTCATCCAAATAAGCCAAACCCCTCTGGTGCTCCTCC
GCTGTGAAACATGGACCCAGTTCCTCAAGCGACACATGGCACTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCCTCGCCTTCCCTCTCCAG
CCTTCTCCTCATCCTTCCTGTACAAGACATGCGCAACTGCAGCTTCCCAG
GTGGTGATATAGTAAGCTTTCTCGCCCACATTCTCGTCACCACTTGCAAA
GTGTCTCAACAAATACAAAGACGAAAACACGTCGGGACAGTCCGCGTGGA
CTAAGGCGTAGACCAGCAAGGGGAAAAGAACATCAGCCGGCAATGATTGT
TGTGGGGTCAAGGTTAGGCGTTTCTTTCCCTCCTTCCCTCCTCCTGTTCC
ATTTCCTACTATTGCTTTTGCTGCTGTCCCTGACGCTGCTGCTGTCGCAG
CTACCTCTCCTTCATCCCCTCCATCTCCTCCTTCTCCATCTTTTTCTCCA
CCCACTCCTGCTGCTGCTGCTGCTGCTGCTG
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Coding sequence (CDS) from alignment at scaffold_5:843376..843956+

>mRNA_2648 ID=mRNA_2648|Name=jgi.p|Nanoce1779_2|581045|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at scaffold_5:843376..843956+ (Nannochloropsis oceanica)
ATGGCACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCCTC
GCCTTCCCTCTCCAGCCTTCTCCTCATCCTTCCTGTACAAGACATGCGCA
ACTGCAGCTTCCCAGGTGGTGATATAGTAAGCTTTCTCGCCCACATTCTC
GTCACCACTTGCAAAGTGTCTCAACAAATACAAAGACGAAAACACGTCGG
GACAGTCCGCGTGGACTAA
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Synonyms
Publications