jgi.p|Nanoce1779_2|610804, mRNA_10501 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610804
Unique Name	mRNA_10501
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1718
Alignment location	scaffold_52:105525..107388 -

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Properties


Property Name	Value
TranscriptId	610890
Track	FilteredModels2
ProteinId	610804

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:105525..107388 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610804	gene_10501	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610804	mRNA_10501-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10501	CDS_10501	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_52:105525..107388-
coding sequence from alignment at scaffold_52:105525..107388-

mRNA sequence

>mRNA_10501 ID=mRNA_10501|Name=jgi.p|Nanoce1779_2|610804|organism=Nannochloropsis oceanica|type=mRNA|length=1718bp
CAGGATCACATGACGGCATTTCCCAAAAGCGAATGGAAACTGCGTTTTTA
TCAATCAATCCTACTGTCGAGCGTATGTATAATGATGCTGGAAAGTCGCG
AAAGGTTAAAAATGGCTGACTTCACAATTTCTGGTATTAAAAATAATGAC
CTTCGAAACCCTGCTCGGGGAGATGAAAATTCCGAGGTGGAACAGCACGC
TTATGGTTTTCGAACGCTGATTGATGAGTATCGTACTCTCTGGACCGCGG
GGTGGAACGCGCGATACGCCAAATACTACCTACCGGTGCCACCAAAAGTA
ACGTGGGCACTGGAGGCTGAGGACATTGTTGAGAGAGAGTATCGTCGTTT
GCATTTCCCTGCCCACTGCAGCGATGTCAATGGGTGGCTGGTTGTCAATG
CATACAATTGGGGCGTTATGTCGGCGATGCGGGACTATCAATCTGATATT
CTGCGAGCCTTGGCCATGAACTACACAGTAGTGCATCAAGGAGTATACAA
TTTGTGTCCTTCAAATCCGCAGCAATTTTTAGACTGTTTTTGGGAGGACT
TGAATGCCTGTCAATCTGAGTTTCCTTCCCTTTTAAGCGTTCCCAGAATA
AACCAACCCCAGGAAATTACCACATCGGCAGTGTTCCATGAACAATTCCC
GCATTGGCTGTGGAATCTATTGGTTGACAAGGGGGCCATACACCTACAGC
ATGGACTGACGGGTGCAACACTGACGGAAGAGGACATTGTGGATGAGGAT
CAATATCTTCAACTCAAGCTATCTGTGTTAAGAGCAATTCTTAGCAAAAG
AATCTTCAAGCCGAGGAAGCATATCCAGCGAAAGACTTTGGCGATGCTTA
AGTCGTGGAGATCGAATGGAAGCTACGCAAATACATCCGAAAAAGGCGTA
GTGATTCACATCCGTCGCACTGATAAGATGAGTGACTTAGGGGCTCATTG
GCACTATATCGACTTTGAGTCCACTGCACACTTAGGGCGCCTAGTTCAGA
CGATGGAAAATATGATCAACAGTACTTTCCAGCATTTTTTTGTCATGTCC
GATGACCCCATCATGCAAAAGCGTGGTACCAAGGAGCTTGCTTCCTTTTT
CCAGGCCAATCCTTCAAATCTTGTTAGTACCGAGCTCTGCGATCTGTTGG
GAGCCAATCGGTTGGAGTACGACGGCCACGAATCGCTTGCGGCAGCTCAC
CGTCACCAGCTATATGATATTGTTGTCGCAGAAATGTACGCCGCTATCGA
AGTTTCTCAGTACATCATTGGGTCTGGTTCCTGTGCCGTTAGCCAGTTCA
TGGCTCTTAACATCGGGGCAAGACACCGCGTCGGTAGGTCGGATAAATAT
TTACTTGCCACTCTTCTCATGTACGTAACTCCACTTTTTCTTCGTCCTAC
AGAACCAGGCCTTGTAGCTCTTTGGGAGGAAGACTTAATCATAAAGGAAT
GTCGCTTGCTTCTTCATCAGCGAATGAGTTTGCACAAACCGTGTAACGCT
TCATCGTACTTGGAGCGGTCAAGCAGCAAACCCTTATTTCAAACGTTCTT
AGACGGGCAATGGAATGACAAGACATGCCTCCAATTCTTGCCCCCCTTGC
CAAACTGTTTTGGTGATGCAGGATGAGAGGGAAACATCGACTTAAACAAT
GATATGGCTCAAAACATTGCTTCTACCCACTCCCGCTAAGAGCATTAGAT
AAGATGATTAGATCCAAC

protein sequence of jgi.p|Nanoce1779_2|610804

>mRNA_10501-protein ID=mRNA_10501-protein|Name=jgi.p|Nanoce1779_2|610804|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MTAFPKSEWKLRFYQSILLSSVCIMMLESRERLKMADFTISGIKNNDLRN
PARGDENSEVEQHAYGFRTLIDEYRTLWTAGWNARYAKYYLPVPPKVTWA
LEAEDIVEREYRRLHFPAHCSDVNGWLVVNAYNWGVMSAMRDYQSDILRA
LAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPRINQP
QEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLTEEDIVDEDQYL
QLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKGVVIH
IRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVMSDDP
IMQKRGTKELASFFQANPSNLVSTELCDLLGANRLEYDGHESLAAAHRHQ
LYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVGRSDKYLLA
TLLMYVTPLFLRPTEPGLVALWEEDLIIKECRLLLHQRMSLHKPCNASSY
LERSSSKPLFQTFLDGQWNDKTCLQFLPPLPNCFGDAG*

mRNA from alignment at scaffold_52:105525..107388-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10501 ID=mRNA_10501|Name=jgi.p|Nanoce1779_2|610804|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp|location=Sequence derived from alignment at scaffold_52:105525..107388- (Nannochloropsis oceanica)
CAGGATCACATGACGGCATTTCCCAAAAGCGAATGGAAACTGCGTTTTTA
TCAATCAATCCTACTGTCGAGCGTATGTATAATGATGCTGGAAAGTCGCG
AAAGGTTAAAAATGGCTGACTTCACAATTTCTGGTATTAAAAATAATGAC
CTTCGAAACCCTGCTCGGGGAGATGAAAATTCCGAGGTGGAACAGCACGC
TTATGGTTTTCGAACGCTGATTGATGAGTATCGTACTCTCTGGACCGCGG
GGTGGAACGCGCGATACGCCAAATACTACCTACCGGTGCCACCAAAAGTA
ACGTGGGCACTGGAGGCTGAGGACATTGTTGAGAGAGAGTATCGTCGTTT
GCATTTCCCTGCCCACTGCAGCGATGTCAATGGTAAGAGGGGTTGGAACA
AAGGTATATATAATAATGGAAAGAAAATCCCATATCCATCTGCATTCGCC
CCGTATAGGGTGGCTGGTTGTCAATGCATACAATTGGGGCGTTATGTCGG
CGATGCGGGACTATCAATCTGATATTCTGCGAGCCTTGGCCATGAACTAC
ACAGTAGTGCATCAAGGAGTATACAATTTGTGTCCTTCAAATCCGCAGCA
ATTTTTAGACTGTTTTTGGGAGGACTTGAATGCCTGTCAATCTGAGTTTC
CTTCCCTTTTAAGCGTTCCCAGAATAAACCAACCCCAGGAAATTACCACA
TCGGCAGTGTTCCATGAACAATTCCCGCATTGGCTGTGGAATCTATTGGT
TGACAAGGGGGCCATACACCTACAGCATGGACTGACGGGTGCAACACTGA
CGGAAGAGGACATTGTGGATGAGGATCAATATCTTCAACTCAAGCTATCT
GTGTTAAGAGCAATTCTTAGCAAAAGAATCTTCAAGCCGAGGAAGCATAT
CCAGCGAAAGACTTTGGCGATGCTTAAGTCGTGGAGATCGAATGGAAGCT
ACGCAAATACATCCGAAAAAGGCGTAGTGATTCACATCCGTCGCACTGAT
AAGATGAGTGACTTAGGGGCTCATTGGCACTATATCGACTTTGAGTCCAC
TGCACACTTAGGGCGCCTAGTTCAGACGATGGAAAATATGATCAACAGTA
CTTTCCAGCATTTTTTTGTCATGTCCGATGACCCCATCATGCAAAAGCGT
GGTACCAAGGAGCTTGCTTCCTTTTTCCAGGCCAATCCTTCAAATCTTGT
TAGTACCGAGCTCTGCGATCTGTTGGGAGCCAATCGGTTGGAGTACGACG
GCCACGAATCGCTTGCGGCAGCTCACCGTCACCAGCTATATGTACGTACA
CTAGCGTTGGACCGATGCTTTGCGTGACCACTATCTCTAATTTTGATTTC
TTGCAATACAGGATATTGTTGTCGCAGAAATGTACGCCGCTATCGAAGTT
TCTCAGTACATCATTGGGTCTGGTTCCTGTGCCGTTAGCCAGTTCATGGC
TCTTAACATCGGGGCAAGACACCGCGTCGGTAGGTCGGATAAATATTTAC
TTGCCACTCTTCTCATGTACGTAACTCCACTTTTTCTTCGTCCTACAGAA
CCAGGCCTTGTAGCTCTTTGGGAGGAAGACTTAATCATAAAGGAATGTCG
CTTGCTTCTTCATCAGCGAATGAGTTTGCACAAACCGTGTAACGCTTCAT
CGTACTTGGAGCGGTCAAGCAGCAAACCCTTATTTCAAACGTTCTTAGAC
GGGCAATGGAATGACAAGACATGCCTCCAATTCTTGCCCCCCTTGCCAAA
CTGTTTTGGTGATGCAGGATGAGAGGGAAACATCGACTTAAACAATGATA
TGGCTCAAAACATTGCTTCTACCCACTCCCGCTAAGAGCATTAGATAAGA
TGATTAGATCCAAC

Coding sequence (CDS) from alignment at scaffold_52:105525..107388-

>mRNA_10501 ID=mRNA_10501|Name=jgi.p|Nanoce1779_2|610804|organism=Nannochloropsis oceanica|type=CDS|length=4851bp|location=Sequence derived from alignment at scaffold_52:105525..107388- (Nannochloropsis oceanica)
GATATTGTTGTCGCAGAAATGTACGCCGCTATCGAAGTTTCTCAGTACAT
CATTGGGTCTGGTTCCTGTGCCGTTAGCCAGTTCATGGCTCTTAACATCG
GGGCAAGACACCGCGTCGGTAGGTCGGATAAATATTTACTTGCCACTCTT
CTCATGTACGTAACTCCACTTTTTCTTCGTCCTACAGAACCAGGCCTTGT
AGCTCTTTGGGAGGAAGACTTAATCATAAAGGAATGTCGCTTGCTTCTTC
ATCAGCGAATGAGTTTGCACAAACCGTGTAACGCTTCATCGTACTTGGAG
CGGTCAAGCAGCAAACCCTTATTTCAAACGTTCTTAGACGGGCAATGGAA
TGACAAGACATGCCTCCAATTCTTGCCCCCCTTGCCAAACTGTTTTGGTG
ATGCAGGATGAGGTGGCTGGTTGTCAATGCATACAATTGGGGCGTTATGT
CGGCGATGCGGGACTATCAATCTGATATTCTGCGAGCCTTGGCCATGAAC
TACACAGTAGTGCATCAAGGAGTATACAATTTGTGTCCTTCAAATCCGCA
GCAATTTTTAGACTGTTTTTGGGAGGACTTGAATGCCTGTCAATCTGAGT
TTCCTTCCCTTTTAAGCGTTCCCAGAATAAACCAACCCCAGGAAATTACC
ACATCGGCAGTGTTCCATGAACAATTCCCGCATTGGCTGTGGAATCTATT
GGTTGACAAGGGGGCCATACACCTACAGCATGGACTGACGGGTGCAACAC
TGACGGAAGAGGACATTGTGGATGAGGATCAATATCTTCAACTCAAGCTA
TCTGTGTTAAGAGCAATTCTTAGCAAAAGAATCTTCAAGCCGAGGAAGCA
TATCCAGCGAAAGACTTTGGCGATGCTTAAGTCGTGGAGATCGAATGGAA
GCTACGCAAATACATCCGAAAAAGGCGTAGTGATTCACATCCGTCGCACT
GATAAGATGAGTGACTTAGGGGCTCATTGGCACTATATCGACTTTGAGTC
CACTGCACACTTAGGGCGCCTAGTTCAGACGATGGAAAATATGATCAACA
GTACTTTCCAGCATTTTTTTGTCATGTCCGATGACCCCATCATGCAAAAG
CGTGGTACCAAGGAGCTTGCTTCCTTTTTCCAGGCCAATCCTTCAAATCT
TGTTAGTACCGAGCTCTGCGATCTGTTGGGAGCCAATCGGTTGGAGTACG
ACGGCCACGAATCGCTTGCGGCAGCTCACCGTCACCAGCTATATATGACG
GCATTTCCCAAAAGCGAATGGAAACTGCGTTTTTATCAATCAATCCTACT
GTCGAGCGTATGTATAATGATGCTGGAAAGTCGCGAAAGGTTAAAAATGG
CTGACTTCACAATTTCTGGTATTAAAAATAATGACCTTCGAAACCCTGCT
CGGGGAGATGAAAATTCCGAGGTGGAACAGCACGCTTATGGTTTTCGAAC
GCTGATTGATGAGTATCGTACTCTCTGGACCGCGGGGTGGAACGCGCGAT
ACGCCAAATACTACCTACCGGTGCCACCAAAAGTAACGTGGGCACTGGAG
GCTGAGGACATTGTTGAGAGAGAGTATCGTCGTTTGCATTTCCCTGCCCA
CTGCAGCGATGTCAATGGATATTGTTGTCGCAGAAATGTACGCCGCTATC
GAAGTTTCTCAGTACATCATTGGGTCTGGTTCCTGTGCCGTTAGCCAGTT
CATGGCTCTTAACATCGGGGCAAGACACCGCGTCGGTAGGTCGGATAAAT
ATTTACTTGCCACTCTTCTCATGTACGTAACTCCACTTTTTCTTCGTCCT
ACAGAACCAGGCCTTGTAGCTCTTTGGGAGGAAGACTTAATCATAAAGGA
ATGTCGCTTGCTTCTTCATCAGCGAATGAGTTTGCACAAACCGTGTAACG
CTTCATCGTACTTGGAGCGGTCAAGCAGCAAACCCTTATTTCAAACGTTC
TTAGACGGGCAATGGAATGACAAGACATGCCTCCAATTCTTGCCCCCCTT
GCCAAACTGTTTTGGTGATGCAGGATGAGGTGGCTGGTTGTCAATGCATA
CAATTGGGGCGTTATGTCGGCGATGCGGGACTATCAATCTGATATTCTGC
GAGCCTTGGCCATGAACTACACAGTAGTGCATCAAGGAGTATACAATTTG
TGTCCTTCAAATCCGCAGCAATTTTTAGACTGTTTTTGGGAGGACTTGAA
TGCCTGTCAATCTGAGTTTCCTTCCCTTTTAAGCGTTCCCAGAATAAACC
AACCCCAGGAAATTACCACATCGGCAGTGTTCCATGAACAATTCCCGCAT
TGGCTGTGGAATCTATTGGTTGACAAGGGGGCCATACACCTACAGCATGG
ACTGACGGGTGCAACACTGACGGAAGAGGACATTGTGGATGAGGATCAAT
ATCTTCAACTCAAGCTATCTGTGTTAAGAGCAATTCTTAGCAAAAGAATC
TTCAAGCCGAGGAAGCATATCCAGCGAAAGACTTTGGCGATGCTTAAGTC
GTGGAGATCGAATGGAAGCTACGCAAATACATCCGAAAAAGGCGTAGTGA
TTCACATCCGTCGCACTGATAAGATGAGTGACTTAGGGGCTCATTGGCAC
TATATCGACTTTGAGTCCACTGCACACTTAGGGCGCCTAGTTCAGACGAT
GGAAAATATGATCAACAGTACTTTCCAGCATTTTTTTGTCATGTCCGATG
ACCCCATCATGCAAAAGCGTGGTACCAAGGAGCTTGCTTCCTTTTTCCAG
GCCAATCCTTCAAATCTTGTTAGTACCGAGCTCTGCGATCTGTTGGGAGC
CAATCGGTTGGAGTACGACGGCCACGAATCGCTTGCGGCAGCTCACCGTC
ACCAGCTATATATGACGGCATTTCCCAAAAGCGAATGGAAACTGCGTTTT
TATCAATCAATCCTACTGTCGAGCGTATGTATAATGATGCTGGAAAGTCG
CGAAAGGTTAAAAATGGCTGACTTCACAATTTCTGGTATTAAAAATAATG
ACCTTCGAAACCCTGCTCGGGGAGATGAAAATTCCGAGGTGGAACAGCAC
GCTTATGGTTTTCGAACGCTGATTGATGAGTATCGTACTCTCTGGACCGC
GGGGTGGAACGCGCGATACGCCAAATACTACCTACCGGTGCCACCAAAAG
TAACGTGGGCACTGGAGGCTGAGGACATTGTTGAGAGAGAGTATCGTCGT
TTGCATTTCCCTGCCCACTGCAGCGATGTCAATGGATATTGTTGTCGCAG
AAATGTACGCCGCTATCGAAGTTTCTCAGTACATCATTGGGTCTGGTTCC
TGTGCCGTTAGCCAGTTCATGGCTCTTAACATCGGGGCAAGACACCGCGT
CGGTAGGTCGGATAAATATTTACTTGCCACTCTTCTCATGTACGTAACTC
CACTTTTTCTTCGTCCTACAGAACCAGGCCTTGTAGCTCTTTGGGAGGAA
GACTTAATCATAAAGGAATGTCGCTTGCTTCTTCATCAGCGAATGAGTTT
GCACAAACCGTGTAACGCTTCATCGTACTTGGAGCGGTCAAGCAGCAAAC
CCTTATTTCAAACGTTCTTAGACGGGCAATGGAATGACAAGACATGCCTC
CAATTCTTGCCCCCCTTGCCAAACTGTTTTGGTGATGCAGGATGAGGTGG
CTGGTTGTCAATGCATACAATTGGGGCGTTATGTCGGCGATGCGGGACTA
TCAATCTGATATTCTGCGAGCCTTGGCCATGAACTACACAGTAGTGCATC
AAGGAGTATACAATTTGTGTCCTTCAAATCCGCAGCAATTTTTAGACTGT
TTTTGGGAGGACTTGAATGCCTGTCAATCTGAGTTTCCTTCCCTTTTAAG
CGTTCCCAGAATAAACCAACCCCAGGAAATTACCACATCGGCAGTGTTCC
ATGAACAATTCCCGCATTGGCTGTGGAATCTATTGGTTGACAAGGGGGCC
ATACACCTACAGCATGGACTGACGGGTGCAACACTGACGGAAGAGGACAT
TGTGGATGAGGATCAATATCTTCAACTCAAGCTATCTGTGTTAAGAGCAA
TTCTTAGCAAAAGAATCTTCAAGCCGAGGAAGCATATCCAGCGAAAGACT
TTGGCGATGCTTAAGTCGTGGAGATCGAATGGAAGCTACGCAAATACATC
CGAAAAAGGCGTAGTGATTCACATCCGTCGCACTGATAAGATGAGTGACT
TAGGGGCTCATTGGCACTATATCGACTTTGAGTCCACTGCACACTTAGGG
CGCCTAGTTCAGACGATGGAAAATATGATCAACAGTACTTTCCAGCATTT
TTTTGTCATGTCCGATGACCCCATCATGCAAAAGCGTGGTACCAAGGAGC
TTGCTTCCTTTTTCCAGGCCAATCCTTCAAATCTTGTTAGTACCGAGCTC
TGCGATCTGTTGGGAGCCAATCGGTTGGAGTACGACGGCCACGAATCGCT
TGCGGCAGCTCACCGTCACCAGCTATATATGACGGCATTTCCCAAAAGCG
AATGGAAACTGCGTTTTTATCAATCAATCCTACTGTCGAGCGTATGTATA
ATGATGCTGGAAAGTCGCGAAAGGTTAAAAATGGCTGACTTCACAATTTC
TGGTATTAAAAATAATGACCTTCGAAACCCTGCTCGGGGAGATGAAAATT
CCGAGGTGGAACAGCACGCTTATGGTTTTCGAACGCTGATTGATGAGTAT
CGTACTCTCTGGACCGCGGGGTGGAACGCGCGATACGCCAAATACTACCT
ACCGGTGCCACCAAAAGTAACGTGGGCACTGGAGGCTGAGGACATTGTTG
AGAGAGAGTATCGTCGTTTGCATTTCCCTGCCCACTGCAGCGATGTCAAT
G

Synonyms

Publications