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Properties
| Property Name | Value |
|---|
| TranscriptId | 611609 |
| Track | FilteredModels2 |
| ProteinId | 611523 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_57 | supercontig | scaffold_57:16429..19312 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10442 ID=mRNA_10442|Name=jgi.p|Nanoce1779_2|611523|organism=Nannochloropsis oceanica|type=mRNA|length=2856bp
ACAGATAGCCAATAGGGAACCATGCGGGTTCGAACTTGTCAAAAGGGCGG
CCTGGTCCAGCTCCTGGCAGTCCTCTTCTTAATAGCCCCTCTCGCGGACG
CTGGCCCCCTGACTGATTTTTTGGATAGAGCTCGTGCTCGATCCGCCACG
CCGTCGCCGACCTTAGCCGCGACACCAGCTCCGACTGAAGTCAAAAAGAC
GCCTGCACCAACTTCTGCTCCTACGAAGAGTCTCACGAAAGCGCCGACGA
GGAAGCCTCTCTTCAACCCCAAGGCAACCCCTGTGCCCGAGCTCCCAGCT
AACGATGATGACGAGGAGGATGGTAACGACCCAAGAGACGACGATGACGA
GGAGGAGGCGACCGACGACGGCTGGGACGACGACGATGAGGGTCTTTGGG
ATGACTTTACGTGGCCCCCTACTGCCGTTGCCCCTGCGACTGACGCGATG
AAGGACAGTGTGGCGGCTCCCACGGACCTCCCAGCGGACGATGATGAAGA
GGAGGATGACTGGGATGAGGACGAGTACGGTTGGAGTGACGACGATGACG
AGGAGGAGGCGACCGATGACGGCTGGGATGACGACGACGAGGGTCTTTGG
GATGACTTCACGTGGCCCCCCACTGCCGTTGCTCCTGCGACTGACGCGAT
GAAGGACAGTGTGGTGGCTCTGGATACTGCGACGCCTATCCCCACGGAAC
CTCCTTTCGAACTCTCTGTGATGCCTGCTGACGATGACTTTCGAGTGGAG
GGTGAATACGAGGGGGAGGATGACGACTTGGAGAATGATGAAGACCTTGA
AGACATGATGGAAGACGACCCTGAGGTAGCGGAGGAGAAAGAGTTTGATA
TTGCCAGCAGTGAGGTGGAGGAAGACGATGACCTGGAGGAAGGCATAGAG
CCCCTTGACGAAAGTGAGGAGGCCACAGTCGGCCCGGTCGAAGCTGGGGA
AGCTGTCACACCTGCGGAGAAGGGGGATGCCGCTGCTATCGACGACGACG
AGGAGGCAAACGATGATGACGTCGCGGCCGAACCTATGGAGGAAAATGCG
GTGGCGGCGGACGACGACGAGGAGGCAAACGATGATGACGTCGCAGCCGA
AACTATGGAGGAAAATGCGGTGGCGGCGGACGACGACGAGGAGGAGGAGA
AGGAGGAGCACAATGACGATGACGAGGAGCACGACGACGACGACGAGGAG
CACGACAACGATGACGAGGAACAAGTTGACGACGTGGACGATGAGGAGGA
GTTGGAGGTAATGGGCAAGGAGGATGACGCCGTCATTTCCGAATTTCCGG
TTGAAGCTGCGGTTGAAGTGCCCGAAGAGGAGACGACGGATGGCGACCGG
ACTGATGGCACCGTTGCTGACCCCGCCGAGGTTGTTGATGCGAAGGCCAC
GCGAGCCCCTACCGCTGCGCGCTCGCCCGCGCCCACCAACGGTGTGCCCA
TAGTCGACCCGGACGGGGTAGGGACGGGACTCCCTCCTGATGCCGTTGCA
GAGGGGGGGCTTCCCGGGGCACCCGGAGGTGGCTTAGGCCAGGGGGGTGG
AAACCTGCCCGGAGTGCCTAACCTGGGAGGGGTGGGTAACGGTCCTATCG
GGGATATGATTACCGGTGGGGCGAAGGACGGGACAGATGCCACGCCCATG
ACGGGAGAGGAGGGGAGCGTCACAAACCCCACGAGCGGAGTCGACCCGAC
AGACACGACAAGCGGCGGGGGCAAGACCACCACCACGAACATCACCCCTC
CAACTGCCCCGCCGACGGAGAAAGAAGACAAGATCCTGCCGATTGACGAT
GCGCTGCCGGCGGACGGGACGCTCAACGAGCAGGCGGTGATGCACTCGGG
TGCGGCAATGATCCATACGTCCGTGTTGGCGGTGCTGGCGACCGCAGCCA
TGGCGGCCGTGCCTCTGCTAGCATTTTAATCATAAAATTATGTAGTCAAG
GGATTAGGGGATGGGAAGGAGAAGGGTCGTAATATCTCTATACCATATGT
GCGTTTTTTAATTGTGTGGTTATCCGTGGCTCTGTCACGAACGGGGGAAT
GTGCATACCTTCACTCTTGCGTGTCAGTGCGTGCGAATTTCCGGTGAAGG
AGGAAGAGATACGCTTTGTGTATGTACGTTTCTATTTTTGTCAGCTGATG
TAAAATATCTGCATGTGGATGGGAGTGGTTGAAAAGTCAATGGAGAAGAG
AAGCAGGAGGAGGAGGAGGAGGAGGGGATGGTGGTGGTGTAAGGTCGTGC
ATCCTCCCCCCCTCTTTCCTCCCCGTTCCCTCTCTTTCAGTCGCATTTTT
TGTTTGTGTTTGTTGATTCCAAGTACTGTATCGCCCGTCATACCCCTTCC
TCCCTTTTGCTGGAGGGGAGAGGGTTGACGAGGGAGAGAAACAGAGAAAG
GAAAATAGCACAGGGGAAAGGAGTGGAGAGAAGAGGGGGTAGAGGAAGAG
AACGAAGATAAAAGGAAGAAAACAAGAGCACGAGGCAACTGCCCCGTGTG
TCAAGGTAAAGAAATCATGTGTATGTGGGGGAGCTTCCCCGGCAAGGGCC
GGCGTTGTAATGAAGGCAGCACAGTGCATGGGTAGGAAATGGCCGTCACA
AAAACAAGGTGGCGACCGAGCGATTCATCCTCCGGCGACGGCACTGAATG
GTTTCTCCACGACACATGTACTGGCAGCGGCTTCCTTGGCTTTTTTTAGC
ATGTTTCAGGCACACCACCGCGACCAGGAGGGGGGGGAGAGAGGAGGAGG
AGGAAAAGAAGAGACCAAACCTAATCCTCAGGTAGGAAGAAGAAAATGCG
TGATTACGTAGGAGAGAAGAAGAAGAAGAGAAAGGATGAACTATAAGCAG
CCTTAA back to topprotein sequence of jgi.p|Nanoce1779_2|611523 >mRNA_10442-protein ID=mRNA_10442-protein|Name=jgi.p|Nanoce1779_2|611523|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp
MRVRTCQKGGLVQLLAVLFLIAPLADAGPLTDFLDRARARSATPSPTLAA
TPAPTEVKKTPAPTSAPTKSLTKAPTRKPLFNPKATPVPELPANDDDEED
GNDPRDDDDEEEATDDGWDDDDEGLWDDFTWPPTAVAPATDAMKDSVAAP
TDLPADDDEEEDDWDEDEYGWSDDDDEEEATDDGWDDDDEGLWDDFTWPP
TAVAPATDAMKDSVVALDTATPIPTEPPFELSVMPADDDFRVEGEYEGED
DDLENDEDLEDMMEDDPEVAEEKEFDIASSEVEEDDDLEEGIEPLDESEE
ATVGPVEAGEAVTPAEKGDAAAIDDDEEANDDDVAAEPMEENAVAADDDE
EANDDDVAAETMEENAVAADDDEEEEKEEHNDDDEEHDDDDEEHDNDDEE
QVDDVDDEEELEVMGKEDDAVISEFPVEAAVEVPEEETTDGDRTDGTVAD
PAEVVDAKATRAPTAARSPAPTNGVPIVDPDGVGTGLPPDAVAEGGLPGA
PGGGLGQGGGNLPGVPNLGGVGNGPIGDMITGGAKDGTDATPMTGEEGSV
TNPTSGVDPTDTTSGGGKTTTTNITPPTAPPTEKEDKILPIDDALPADGT
LNEQAVMHSGAAMIHTSVLAVLATAAMAAVPLLAF* back to topmRNA from alignment at scaffold_57:16429..19312+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10442 ID=mRNA_10442|Name=jgi.p|Nanoce1779_2|611523|organism=Nannochloropsis oceanica|type=mRNA|length=2884bp|location=Sequence derived from alignment at scaffold_57:16429..19312+ (Nannochloropsis oceanica)
ACAGATAGCCAATAGGGAACCATGCGGGTTCGAACTTGTCAAAAGGGCGG
CCTGGTCCAGCTCCTGGCAGTCCTCTTCTTAATAGCCCCTCTCGCGGACG
CTGGCCCCCTGACTGATTTTTTGGATAGAGCTCGTGCTCGATCCGCCACG
CCGTCGCCGACCTTAGCCGCGACACCAGCTCCGACTGAAGTCAAAAAGAC
GCCTGCACCAACTTCTGCTCCTACGAAGAGTCTCACGAAAGCGCCGACGA
GGAAGCCTCTCTTCAACCCCAAGGCAACCCCTGTGCCCGAGCTCCCAGCT
AACGATGATGACGAGGAGGATGTCTGGGATGGAGAATATGCCGATGGAGG
GTAACGACCCAAGAGACGACGATGACGAGGAGGAGGCGACCGACGACGGC
TGGGACGACGACGATGAGGGTCTTTGGGATGACTTTACGTGGCCCCCTAC
TGCCGTTGCCCCTGCGACTGACGCGATGAAGGACAGTGTGGCGGCTCCCA
CGGACCTCCCAGCGGACGATGATGAAGAGGAGGATGACTGGGATGAGGAC
GAGTACGGTTGGAGTGACGACGATGACGAGGAGGAGGCGACCGATGACGG
CTGGGATGACGACGACGAGGGTCTTTGGGATGACTTCACGTGGCCCCCCA
CTGCCGTTGCTCCTGCGACTGACGCGATGAAGGACAGTGTGGTGGCTCTG
GATACTGCGACGCCTATCCCCACGGAACCTCCTTTCGAACTCTCTGTGAT
GCCTGCTGACGATGACTTTCGAGTGGAGGGTGAATACGAGGGGGAGGATG
ACGACTTGGAGAATGATGAAGACCTTGAAGACATGATGGAAGACGACCCT
GAGGTAGCGGAGGAGAAAGAGTTTGATATTGCCAGCAGTGAGGTGGAGGA
AGACGATGACCTGGAGGAAGGCATAGAGCCCCTTGACGAAAGTGAGGAGG
CCACAGTCGGCCCGGTCGAAGCTGGGGAAGCTGTCACACCTGCGGAGAAG
GGGGATGCCGCTGCTATCGACGACGACGAGGAGGCAAACGATGATGACGT
CGCGGCCGAACCTATGGAGGAAAATGCGGTGGCGGCGGACGACGACGAGG
AGGCAAACGATGATGACGTCGCAGCCGAAACTATGGAGGAAAATGCGGTG
GCGGCGGACGACGACGAGGAGGAGGAGAAGGAGGAGCACAATGACGATGA
CGAGGAGCACGACGACGACGACGAGGAGCACGACAACGATGACGAGGAAC
AAGTTGACGACGTGGACGATGAGGAGGAGTTGGAGGTAATGGGCAAGGAG
GATGACGCCGTCATTTCCGAATTTCCGGTTGAAGCTGCGGTTGAAGTGCC
CGAAGAGGAGACGACGGATGGCGACCGGACTGATGGCACCGTTGCTGACC
CCGCCGAGGTTGTTGATGCGAAGGCCACGCGAGCCCCTACCGCTGCGCGC
TCGCCCGCGCCCACCAACGGTGTGCCCATAGTCGACCCGGACGGGGTAGG
GACGGGACTCCCTCCTGATGCCGTTGCAGAGGGGGGGCTTCCCGGGGCAC
CCGGAGGTGGCTTAGGCCAGGGGGGTGGAAACCTGCCCGGAGTGCCTAAC
CTGGGAGGGGTGGGTAACGGTCCTATCGGGGATATGATTACCGGTGGGGC
GAAGGACGGGACAGATGCCACGCCCATGACGGGAGAGGAGGGGAGCGTCA
CAAACCCCACGAGCGGAGTCGACCCGACAGACACGACAAGCGGCGGGGGC
AAGACCACCACCACGAACATCACCCCTCCAACTGCCCCGCCGACGGAGAA
AGAAGACAAGATCCTGCCGATTGACGATGCGCTGCCGGCGGACGGGACGC
TCAACGAGCAGGCGGTGATGCACTCGGGTGCGGCAATGATCCATACGTCC
GTGTTGGCGGTGCTGGCGACCGCAGCCATGGCGGCCGTGCCTCTGCTAGC
ATTTTAATCATAAAATTATGTAGTCAAGGGATTAGGGGATGGGAAGGAGA
AGGGTCGTAATATCTCTATACCATATGTGCGTTTTTTAATTGTGTGGTTA
TCCGTGGCTCTGTCACGAACGGGGGAATGTGCATACCTTCACTCTTGCGT
GTCAGTGCGTGCGAATTTCCGGTGAAGGAGGAAGAGATACGCTTTGTGTA
TGTACGTTTCTATTTTTGTCAGCTGATGTAAAATATCTGCATGTGGATGG
GAGTGGTTGAAAAGTCAATGGAGAAGAGAAGCAGGAGGAGGAGGAGGAGG
AGGGGATGGTGGTGGTGTAAGGTCGTGCATCCTCCCCCCCTCTTTCCTCC
CCGTTCCCTCTCTTTCAGTCGCATTTTTTGTTTGTGTTTGTTGATTCCAA
GTACTGTATCGCCCGTCATACCCCTTCCTCCCTTTTGCTGGAGGGGAGAG
GGTTGACGAGGGAGAGAAACAGAGAAAGGAAAATAGCACAGGGGAAAGGA
GTGGAGAGAAGAGGGGGTAGAGGAAGAGAACGAAGATAAAAGGAAGAAAA
CAAGAGCACGAGGCAACTGCCCCGTGTGTCAAGGTAAAGAAATCATGTGT
ATGTGGGGGAGCTTCCCCGGCAAGGGCCGGCGTTGTAATGAAGGCAGCAC
AGTGCATGGGTAGGAAATGGCCGTCACAAAAACAAGGTGGCGACCGAGCG
ATTCATCCTCCGGCGACGGCACTGAATGGTTTCTCCACGACACATGTACT
GGCAGCGGCTTCCTTGGCTTTTTTTAGCATGTTTCAGGCACACCACCGCG
ACCAGGAGGGGGGGGAGAGAGGAGGAGGAGGAAAAGAAGAGACCAAACCT
AATCCTCAGGTAGGAAGAAGAAAATGCGTGATTACGTAGGAGAGAAGAAG
AAGAAGAGAAAGGATGAACTATAAGCAGCCTTAA back to topCoding sequence (CDS) from alignment at scaffold_57:16429..19312+ >mRNA_10442 ID=mRNA_10442|Name=jgi.p|Nanoce1779_2|611523|organism=Nannochloropsis oceanica|type=CDS|length=3816bp|location=Sequence derived from alignment at scaffold_57:16429..19312+ (Nannochloropsis oceanica)
ATGCGGGTTCGAACTTGTCAAAAGGGCGGCCTGGTCCAGCTCCTGGCAGT
CCTCTTCTTAATAGCCCCTCTCGCGGACGCTGGCCCCCTGACTGATTTTT
TGGATAGAGCTCGTGCTCGATCCGCCACGCCGTCGCCGACCTTAGCCGCG
ACACCAGCTCCGACTGAAGTCAAAAAGACGCCTGCACCAACTTCTGCTCC
TACGAAGAGTCTCACGAAAGCGCCGACGAGGAAGCCTCTCTTCAACCCCA
AGGCAACCCCTGTGCCCGAGCTCCCAGCTAACGATGATGACGAGGAGGAT
GGTAACGACCCAAGAGACGACGATGACGAGGAGGAGGCGACCGACGACGG
CTGGGACGACGACGATGAGGGTCTTTGGGATGACTTTACGTGGCCCCCTA
CTGCCGTTGCCCCTGCGACTGACGCGATGAAGGACAGTGTGGCGGCTCCC
ACGGACCTCCCAGCGGACGATGATGAAGAGGAGGATGACTGGGATGAGGA
CGAGTACGGTTGGAGTGACGACGATGACGAGGAGGAGGCGACCGATGACG
GCTGGGATGACGACGACGAGGGTCTTTGGGATGACTTCACGTGGCCCCCC
ACTGCCGTTGCTCCTGCGACTGACGCGATGAAGGACAGTGTGGTGGCTCT
GGATACTGCGACGCCTATCCCCACGGAACCTCCTTTCGAACTCTCTGTGA
TGCCTGCTGACGATGACTTTCGAGTGGAGGGTGAATACGAGGGGGAGGAT
GACGACTTGGAGAATGATGAAGACCTTGAAGACATGATGGAAGACGACCC
TGAGGTAGCGGAGGAGAAAGAGTTTGATATTGCCAGCAGTGAGGTGGAGG
AAGACGATGACCTGGAGGAAGGCATAGAGCCCCTTGACGAAAGTGAGGAG
GCCACAGTCGGCCCGGTCGAAGCTGGGGAAGCTGTCACACCTGCGGAGAA
GGGGGATGCCGCTGCTATCGACGACGACGAGGAGGCAAACGATGATGACG
TCGCGGCCGAACCTATGGAGGAAAATGCGGTGGCGGCGGACGACGACGAG
GAGGCAAACGATGATGACGTCGCAGCCGAAACTATGGAGGAAAATGCGGT
GGCGGCGGACGACGACGAGGAGGAGGAGAAGGAGGAGCACAATGACGATG
ACGAGGAGCACGACGACGACGACGAGGAGCACGACAACGATGACGAGGAA
CAAGTTGACGACGTGGACGATGAGGAGGAGTTGGAGGTAATGGGCAAGGA
GGATGACGCCGTCATTTCCGAATTTCCGGTTGAAGCTGCGGTTGAAGTGC
CCGAAGAGGAGACGACGGATGGCGACCGGACTGATGGCACCGTTGCTGAC
CCCGCCGAGGTTGTTGATGCGAAGGCCACGCGAGCCCCTACCGCTGCGCG
CTCGCCCGCGCCCACCAACGGTGTGCCCATAGTCGACCCGGACGGGGTAG
GGACGGGACTCCCTCCTGATGCCGTTGCAGAGGGGGGGCTTCCCGGGGCA
CCCGGAGGTGGCTTAGGCCAGGGGGGTGGAAACCTGCCCGGAGTGCCTAA
CCTGGGAGGGGTGGGTAACGGTCCTATCGGGGATATGATTACCGGTGGGG
CGAAGGACGGGACAGATGCCACGCCCATGACGGGAGAGGAGGGGAGCGTC
ACAAACCCCACGAGCGGAGTCGACCCGACAGACACGACAAGCGGCGGGGG
CAAGACCACCACCACGAACATCACCCCTCCAACTGCCCCGCCGACGGAGA
AAGAAGACAAGATCCTGCCGATTGACGATGCGCTGCCGGCGGACGGGACG
CTCAACGAGCAGGCGGTGATGCACTCGGGTGCGGCAATGATCCATACGTC
CGTGTTGGCGGTGCTGGCGACCGCAGCCATGGCGGCCGTGCCTCTGCTAG
CATTTTAAATGCGGGTTCGAACTTGTCAAAAGGGCGGCCTGGTCCAGCTC
CTGGCAGTCCTCTTCTTAATAGCCCCTCTCGCGGACGCTGGCCCCCTGAC
TGATTTTTTGGATAGAGCTCGTGCTCGATCCGCCACGCCGTCGCCGACCT
TAGCCGCGACACCAGCTCCGACTGAAGTCAAAAAGACGCCTGCACCAACT
TCTGCTCCTACGAAGAGTCTCACGAAAGCGCCGACGAGGAAGCCTCTCTT
CAACCCCAAGGCAACCCCTGTGCCCGAGCTCCCAGCTAACGATGATGACG
AGGAGGATGGTAACGACCCAAGAGACGACGATGACGAGGAGGAGGCGACC
GACGACGGCTGGGACGACGACGATGAGGGTCTTTGGGATGACTTTACGTG
GCCCCCTACTGCCGTTGCCCCTGCGACTGACGCGATGAAGGACAGTGTGG
CGGCTCCCACGGACCTCCCAGCGGACGATGATGAAGAGGAGGATGACTGG
GATGAGGACGAGTACGGTTGGAGTGACGACGATGACGAGGAGGAGGCGAC
CGATGACGGCTGGGATGACGACGACGAGGGTCTTTGGGATGACTTCACGT
GGCCCCCCACTGCCGTTGCTCCTGCGACTGACGCGATGAAGGACAGTGTG
GTGGCTCTGGATACTGCGACGCCTATCCCCACGGAACCTCCTTTCGAACT
CTCTGTGATGCCTGCTGACGATGACTTTCGAGTGGAGGGTGAATACGAGG
GGGAGGATGACGACTTGGAGAATGATGAAGACCTTGAAGACATGATGGAA
GACGACCCTGAGGTAGCGGAGGAGAAAGAGTTTGATATTGCCAGCAGTGA
GGTGGAGGAAGACGATGACCTGGAGGAAGGCATAGAGCCCCTTGACGAAA
GTGAGGAGGCCACAGTCGGCCCGGTCGAAGCTGGGGAAGCTGTCACACCT
GCGGAGAAGGGGGATGCCGCTGCTATCGACGACGACGAGGAGGCAAACGA
TGATGACGTCGCGGCCGAACCTATGGAGGAAAATGCGGTGGCGGCGGACG
ACGACGAGGAGGCAAACGATGATGACGTCGCAGCCGAAACTATGGAGGAA
AATGCGGTGGCGGCGGACGACGACGAGGAGGAGGAGAAGGAGGAGCACAA
TGACGATGACGAGGAGCACGACGACGACGACGAGGAGCACGACAACGATG
ACGAGGAACAAGTTGACGACGTGGACGATGAGGAGGAGTTGGAGGTAATG
GGCAAGGAGGATGACGCCGTCATTTCCGAATTTCCGGTTGAAGCTGCGGT
TGAAGTGCCCGAAGAGGAGACGACGGATGGCGACCGGACTGATGGCACCG
TTGCTGACCCCGCCGAGGTTGTTGATGCGAAGGCCACGCGAGCCCCTACC
GCTGCGCGCTCGCCCGCGCCCACCAACGGTGTGCCCATAGTCGACCCGGA
CGGGGTAGGGACGGGACTCCCTCCTGATGCCGTTGCAGAGGGGGGGCTTC
CCGGGGCACCCGGAGGTGGCTTAGGCCAGGGGGGTGGAAACCTGCCCGGA
GTGCCTAACCTGGGAGGGGTGGGTAACGGTCCTATCGGGGATATGATTAC
CGGTGGGGCGAAGGACGGGACAGATGCCACGCCCATGACGGGAGAGGAGG
GGAGCGTCACAAACCCCACGAGCGGAGTCGACCCGACAGACACGACAAGC
GGCGGGGGCAAGACCACCACCACGAACATCACCCCTCCAACTGCCCCGCC
GACGGAGAAAGAAGACAAGATCCTGCCGATTGACGATGCGCTGCCGGCGG
ACGGGACGCTCAACGAGCAGGCGGTGATGCACTCGGGTGCGGCAATGATC
CATACGTCCGTGTTGGCGGTGCTGGCGACCGCAGCCATGGCGGCCGTGCC
TCTGCTAGCATTTTAA back to top
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