jgi.p|Nanoce1779_2|582525, mRNA_3541 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582525
Unique NamemRNA_3541
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1383
Alignment locationscaffold_6:608862..610244 -

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Properties
Property NameValue
TranscriptId582611
TrackFilteredModels2
ProteinId582525
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:608862..610244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582525gene_3541Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582525mRNA_3541-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3541CDS_3541Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3541 ID=mRNA_3541|Name=jgi.p|Nanoce1779_2|582525|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp
CCCAAATTAATGTTGGATGAGGTATACATATGGCCTCTGCCTGTCGCCGC
GACGGATGCGACATCCGACGGTACTCGACGTGCCATTAACCTTCTCTCGT
TTCTTCTTCCTGCGCACATGCACACAGGGCTTAAATAGTGCAGGGACTCG
TACGAGAAATTCTCTCCCTTCTAGCTAGTCGTCATAGGCAAAAACTAGAG
CAAATCATGAAGCCTTCCGCTGCCCTCGACCCCATCATGGACCTCGTCTC
GACTTTCCCTGTGCTGACGGCCGTCTGTGCCACTATGCTTTTACTGATAG
CCATTGTGCAATCCTCCACGACTGTCTCTCACTTTTATCCGTCCTCCTTT
GAACTCTCCACCCTGTATGGCAAACTCATTGTCTCGCCCCTTTATAAAAA
CTGGCGGTGGAAAAGTCAACTCAAGAAGGACATGAAGCTGAACCCGCACC
TTGAATTCAAGCTTCCTTTCGAGGCAGATACGGCCAATGTGCAAGCCTAC
GTTGACATGCTTGGTTTGCAAGAAAAGGCGGCGCCAACAGAACTGCCTTT
CGCTTACGTTGCTTCGTGCTTTTTGTACCCGACTGTATGTCTTTTGAGTC
AACGCCGGTACCTGTTCCCCGTCCTCGGGGCCATCCACGTCCACAATTTT
TTTAGATGGGAGCCTCTGAAAAAGGATGAAAAATTCGAAGGCTTTCTCAA
GGTACAAGAAACGGTGAATTTTACCAAGAAAGGCGTAGAGGTGACTTTTC
CCCATCTCCTGCTCAACTCCGAGGGAAGGGAGGTCTGGCGATCGACAACG
ACGGTGTTGGTGCCTTGTCGCAACAAGCTTTATGACCGTACGAATGATAC
CGCAGCAGCAGGGGTAGCAGCAGCAGCACCGCCGACGAAACGTGTGGGCT
TGGTGGAGGAGTATCAAGCACAGGGCCTCAAGCCTGTGTTGGTGCGCGAG
AAGACGTTTAAAACGAAGAGCGATACGGGGAGGCGATTTGCGGAAGTGGT
GCAGGATTACAATCCCATTCATTTGTTCACTGTGACAGCTCGGTTGTTTG
GATTTAAGAGGGCGATTTGCCATGGGATGTACGTGGGGTCGTTGGCAATG
GAGGAGGCGATGGATGTGTGGAGAGGAGAGGTAGGAAAGGGGGAAGGAGT
GATGGAGGCTGATGTAAAATTCATCCGGCCCTGTTTTGTCGGGGATGCTT
TCCGGGTGAAAATTTTTAAAGTGGAAGATAAGAAAGAAGAAACGGGGAAG
AAGCTGGTGGTGGTCGTGACACAGGAGGGAAAAGAGGAGATATGTCACTT
GCAGGCCACTGTGAGGGCGGCAAAGAAAAGTTGAGTGGAGAGATGAGCAT
GAAAGATGAATTGAAAAAAGTGAGGGTATTTAA
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protein sequence of jgi.p|Nanoce1779_2|582525

>mRNA_3541-protein ID=mRNA_3541-protein|Name=jgi.p|Nanoce1779_2|582525|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MKPSAALDPIMDLVSTFPVLTAVCATMLLLIAIVQSSTTVSHFYPSSFEL
STLYGKLIVSPLYKNWRWKSQLKKDMKLNPHLEFKLPFEADTANVQAYVD
MLGLQEKAAPTELPFAYVASCFLYPTVCLLSQRRYLFPVLGAIHVHNFFR
WEPLKKDEKFEGFLKVQETVNFTKKGVEVTFPHLLLNSEGREVWRSTTTV
LVPCRNKLYDRTNDTAAAGVAAAAPPTKRVGLVEEYQAQGLKPVLVREKT
FKTKSDTGRRFAEVVQDYNPIHLFTVTARLFGFKRAICHGMYVGSLAMEE
AMDVWRGEVGKGEGVMEADVKFIRPCFVGDAFRVKIFKVEDKKEETGKKL
VVVVTQEGKEEICHLQATVRAAKKS*
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mRNA from alignment at scaffold_6:608862..610244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3541 ID=mRNA_3541|Name=jgi.p|Nanoce1779_2|582525|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp|location=Sequence derived from alignment at scaffold_6:608862..610244- (Nannochloropsis oceanica)
CCCAAATTAATGTTGGATGAGGTATACATATGGCCTCTGCCTGTCGCCGC
GACGGATGCGACATCCGACGGTACTCGACGTGCCATTAACCTTCTCTCGT
TTCTTCTTCCTGCGCACATGCACACAGGGCTTAAATAGTGCAGGGACTCG
TACGAGAAATTCTCTCCCTTCTAGCTAGTCGTCATAGGCAAAAACTAGAG
CAAATCATGAAGCCTTCCGCTGCCCTCGACCCCATCATGGACCTCGTCTC
GACTTTCCCTGTGCTGACGGCCGTCTGTGCCACTATGCTTTTACTGATAG
CCATTGTGCAATCCTCCACGACTGTCTCTCACTTTTATCCGTCCTCCTTT
GAACTCTCCACCCTGTATGGCAAACTCATTGTCTCGCCCCTTTATAAAAA
CTGGCGGTGGAAAAGTCAACTCAAGAAGGACATGAAGCTGAACCCGCACC
TTGAATTCAAGCTTCCTTTCGAGGCAGATACGGCCAATGTGCAAGCCTAC
GTTGACATGCTTGGTTTGCAAGAAAAGGCGGCGCCAACAGAACTGCCTTT
CGCTTACGTTGCTTCGTGCTTTTTGTACCCGACTGTATGTCTTTTGAGTC
AACGCCGGTACCTGTTCCCCGTCCTCGGGGCCATCCACGTCCACAATTTT
TTTAGATGGGAGCCTCTGAAAAAGGATGAAAAATTCGAAGGCTTTCTCAA
GGTACAAGAAACGGTGAATTTTACCAAGAAAGGCGTAGAGGTGACTTTTC
CCCATCTCCTGCTCAACTCCGAGGGAAGGGAGGTCTGGCGATCGACAACG
ACGGTGTTGGTGCCTTGTCGCAACAAGCTTTATGACCGTACGAATGATAC
CGCAGCAGCAGGGGTAGCAGCAGCAGCACCGCCGACGAAACGTGTGGGCT
TGGTGGAGGAGTATCAAGCACAGGGCCTCAAGCCTGTGTTGGTGCGCGAG
AAGACGTTTAAAACGAAGAGCGATACGGGGAGGCGATTTGCGGAAGTGGT
GCAGGATTACAATCCCATTCATTTGTTCACTGTGACAGCTCGGTTGTTTG
GATTTAAGAGGGCGATTTGCCATGGGATGTACGTGGGGTCGTTGGCAATG
GAGGAGGCGATGGATGTGTGGAGAGGAGAGGTAGGAAAGGGGGAAGGAGT
GATGGAGGCTGATGTAAAATTCATCCGGCCCTGTTTTGTCGGGGATGCTT
TCCGGGTGAAAATTTTTAAAGTGGAAGATAAGAAAGAAGAAACGGGGAAG
AAGCTGGTGGTGGTCGTGACACAGGAGGGAAAAGAGGAGATATGTCACTT
GCAGGCCACTGTGAGGGCGGCAAAGAAAAGTTGAGTGGAGAGATGAGCAT
GAAAGATGAATTGAAAAAAGTGAGGGTATTTAA
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Coding sequence (CDS) from alignment at scaffold_6:608862..610244-

>mRNA_3541 ID=mRNA_3541|Name=jgi.p|Nanoce1779_2|582525|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_6:608862..610244- (Nannochloropsis oceanica)
ATGAAGCCTTCCGCTGCCCTCGACCCCATCATGGACCTCGTCTCGACTTT
CCCTGTGCTGACGGCCGTCTGTGCCACTATGCTTTTACTGATAGCCATTG
TGCAATCCTCCACGACTGTCTCTCACTTTTATCCGTCCTCCTTTGAACTC
TCCACCCTGTATGGCAAACTCATTGTCTCGCCCCTTTATAAAAACTGGCG
GTGGAAAAGTCAACTCAAGAAGGACATGAAGCTGAACCCGCACCTTGAAT
TCAAGCTTCCTTTCGAGGCAGATACGGCCAATGTGCAAGCCTACGTTGAC
ATGCTTGGTTTGCAAGAAAAGGCGGCGCCAACAGAACTGCCTTTCGCTTA
CGTTGCTTCGTGCTTTTTGTACCCGACTGTATGTCTTTTGAGTCAACGCC
GGTACCTGTTCCCCGTCCTCGGGGCCATCCACGTCCACAATTTTTTTAGA
TGGGAGCCTCTGAAAAAGGATGAAAAATTCGAAGGCTTTCTCAAGGTACA
AGAAACGGTGAATTTTACCAAGAAAGGCGTAGAGGTGACTTTTCCCCATC
TCCTGCTCAACTCCGAGGGAAGGGAGGTCTGGCGATCGACAACGACGGTG
TTGGTGCCTTGTCGCAACAAGCTTTATGACCGTACGAATGATACCGCAGC
AGCAGGGGTAGCAGCAGCAGCACCGCCGACGAAACGTGTGGGCTTGGTGG
AGGAGTATCAAGCACAGGGCCTCAAGCCTGTGTTGGTGCGCGAGAAGACG
TTTAAAACGAAGAGCGATACGGGGAGGCGATTTGCGGAAGTGGTGCAGGA
TTACAATCCCATTCATTTGTTCACTGTGACAGCTCGGTTGTTTGGATTTA
AGAGGGCGATTTGCCATGGGATGTACGTGGGGTCGTTGGCAATGGAGGAG
GCGATGGATGTGTGGAGAGGAGAGGTAGGAAAGGGGGAAGGAGTGATGGA
GGCTGATGTAAAATTCATCCGGCCCTGTTTTGTCGGGGATGCTTTCCGGG
TGAAAATTTTTAAAGTGGAAGATAAGAAAGAAGAAACGGGGAAGAAGCTG
GTGGTGGTCGTGACACAGGAGGGAAAAGAGGAGATATGTCACTTGCAGGC
CACTGTGAGGGCGGCAAAGAAAAGTTGA
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Synonyms
Publications