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Properties
| Property Name | Value |
|---|
| TranscriptId | 582469 |
| Track | FilteredModels2 |
| ProteinId | 582383 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:516918..518755 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3499 ID=mRNA_3499|Name=jgi.p|Nanoce1779_2|582383|organism=Nannochloropsis oceanica|type=mRNA|length=988bp
AAAAAGCAGACATAGCATGGAAGGTCTCGACCAAGTGCTGAAGCAGGGCG
ACTCGACGGCAGTCCTAAAGTACATACGGCATCATAGGATTCGTGCATCG
ACAGAAGTCGTGCAGCATGGGCGAGATTTTGTCATGGAGGGCAAGGGGAG
CAGCCTGGGGGACGAAGCTTGGCCCGTGTACGAGCAGGTTTTCCTGGCGG
CCTTGGACCTTGGTGAGACGCTGCTGGCAGAGACTTCGCTGAGACTTCTA
CAAAAGAAATTCCCGGATAGCGCACGGGTTGGACGATTGGAGGGGATGAT
ATGCGAGGCAGAGGGAGATTTTGAACAGGCTGCAAAGGTGTATCTGGATC
TGCGGGAGCGATACCCTACGGACCCGGTGGTATGGAAGCGGTGGGTGGCT
TTGGCCAAGGCCGAGGGGGACTTGCCCGAGGCGATAAAGCGCTGCAACGA
GTATCTCAAGGTCTTCCAGGGCGACACTAGCGCGTGGCAAGAGCTGGCTG
CTTTATATGTTCGGACAGGCCACTTACACGAAGCCGCTTTTTGTTACGAG
GAGCTTGTTCTCTGCAGCCCAGCCAATTTTGCCTTTCACGTTGCATTGGC
CGAGGCGTATGTGGGAATAGGCGGAGGCGAATCTTTGAGGCTAGCACGGA
AGCATTACGCGCAGGCGATGGAGTTGCATGGGGGGGATGATAATTTGCGA
GCCCTGTACGGAATGTGTGCGACATGCCACGCCCTGGCCCGCAGCAGCAG
CAGCGCAAGCGACGAAACAGACAGCCGTGTCAATGCTGCCCTTTTCAATC
TGGCGGGGGACAAGCTCAAGGAACACTACACACGGGCTAACCCTGCCCTC
TTCCCCTTCGTTGAAGCCACGCTTTCCCGGCAAGCCGCGGATGTGTGTTA
GTGACCGCATAGATGTAGAAATGCCTGCGAGAACAATTCAGACAAGGAGA
AAGGGAAATGAAGAAAGAAACAAAAATGAAATTCGTTA back to topprotein sequence of jgi.p|Nanoce1779_2|582383 >mRNA_3499-protein ID=mRNA_3499-protein|Name=jgi.p|Nanoce1779_2|582383|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MEGLDQVLKQGDSTAVLKYIRHHRIRASTEVVQHGRDFVMEGKGSSLGDE
AWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEG
DFEQAAKVYLDLRERYPTDPVVWKRWVALAKAEGDLPEAIKRCNEYLKVF
QGDTSAWQELAALYVRTGHLHEAAFCYEELVLCSPANFAFHVALAEAYVG
IGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDE
TDSRVNAALFNLAGDKLKEHYTRANPALFPFVEATLSRQAADVC* back to topmRNA from alignment at scaffold_6:516918..518755- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3499 ID=mRNA_3499|Name=jgi.p|Nanoce1779_2|582383|organism=Nannochloropsis oceanica|type=mRNA|length=1838bp|location=Sequence derived from alignment at scaffold_6:516918..518755- (Nannochloropsis oceanica)
AAAAAGCAGACATAGCATGGAAGGTCTCGACCAAGTGCTGAAGCAGGGCG
ACTCGACGGCAGTCCTAAAGTACATACGGCATCATAGGGTACGTTAATAA
TTCATCCCCTCCCGCTCGAAGTTCCACCATTACATGCGCTGCAACGTCCT
CCCTTACGCCGCCACCCATCAACACCACCTTTAGATTCGTGCATCGACAG
AAGTCGTGCAGCATGGGCGAGATTTTGTCATGGAGGGCAAGGGGAGCAGC
CTGGGGGACGAAGGTAGGATGAGGGTCTCAAGTGGGCAGGCTTGGAGGAA
GGGGGGAAGTGTGACAATTTAAGTGTGACAATTTCTGCTTAATTGTCCTA
AACATCCCGACCTCACAAATGCACAGCTTGGCCCGTGTACGAGCAGGTTT
TCCTGGCGGCCTTGGACCTTGGTGAGACGCTGCTGGCAGAGGTCAGTGGT
GCACGTGAGAAAAGCTCTCCCTTCTCCAGTCTTTTCACCCCACTTTTCCC
CGCTCGCACAACAGACTTCGCTGAGACTTCTACAAAAGAAATTCCCGGAT
AGCGCACGGGTTGGACGATTGGAGGGGATGATATGCGAGGCAGAGGGAGA
TTTTGAACAGGCTGCAAAGGTGTATCTGGATCTGCGGGAGCGATACCCTA
CGGACCCGGTGAGTTTTCTTTACTTGGAGTGTCAGTTGCCGTGGGCAGAA
GTAGGCGTTTCCTCCTGATTTCATTGTTACAGTTAAAGTTTTCTTTGTAC
CGCTCTCGAGGAATTTCCTCATTCGTCCCTCCCCCATCAAAACAGGTGGT
ATGGAAGCGGTGGGTGGCTTTGGCCAAGGCCGAGGGGGACTTGCCCGAGG
CGATAAAGCGCTGCAACGAGTATCTCAAGGTCTTCCAGGGCGACACTAGC
GCGGTGAGTTCGAAAAGAAGGATGATGATGAAAACGCAAGGAGGGGGCGA
TGGGAATATTTTGTGCGCTTGCTGGCTGGAAGGCGTCTCACGCGTCGGCA
ATTTTTAATTTGGGAGTAAAAGAGTGTGAGGGTAATCAAACGGCTGCGCA
TGTATGCTTTCCTCACGAGAATCTGCGCTATATATATCAACTCAAGTTTC
ATCATACGTACATTCGTTTCCAATCCCATTATTATTAGTGGCAAGAGCTG
GCTGCTTTATATGTTCGGACAGGCCACTTACACGAAGCCGCTTTTTGTTA
CGAGGAGCTTGTTCTCTGCAGCCCAGCCAATTTTGCCTTTCACGTTGCAT
TGGCCGAGGCGTATGTGGGAATAGGCGGAGGCGAATCTTTGAGGCTAGCA
CGGAAGCATTACGCGCAGGCGATGGAGTTGCATGGGGGGGATGATAATTT
GCGAGCCCTGTACGGAATGTGTGCGGTGAGTCTGAGAAAGAGAGGGGAAT
GGGGAGAGGTTGGTAGAGGAACTTGCTTGGATGCCTCCTTCCTACTTATC
GAAGCTCGTTGACGCCAAGCTAGGATTGTCCTCCTTCTTTCAATTCTGCC
TCCGTGTTGTCCTCAAAAGCGCTTCCCCCCTCTTTTCCCTTTTTCCTTCC
CTTCCCTACTGTCACCCCCAGACATGCCACGCCCTGGCCCGCAGCAGCAG
CAGCGCAAGCGACGAAACAGACAGCCGTGTCAATGCTGCCCTTTTCAATC
TGGCGGGGGACAAGCTCAAGGAACACTACACACGGGCTAACCCTGCCCTC
TTCCCCTTCGTTGAAGCCACGCTTTCCCGGCAAGCCGCGGATGTGTGTTA
GTGACCGCATAGATGTAGAAATGCCTGCGAGAACAATTCAGACAAGGAGA
AAGGGAAATGAAGAAAGAAACAAAAATGAAATTCGTTA back to topCoding sequence (CDS) from alignment at scaffold_6:516918..518755- >mRNA_3499 ID=mRNA_3499|Name=jgi.p|Nanoce1779_2|582383|organism=Nannochloropsis oceanica|type=CDS|length=6195bp|location=Sequence derived from alignment at scaffold_6:516918..518755- (Nannochloropsis oceanica)
ACATGCCACGCCCTGGCCCGCAGCAGCAGCAGCGCAAGCGACGAAACAGA
CAGCCGTGTCAATGCTGCCCTTTTCAATCTGGCGGGGGACAAGCTCAAGG
AACACTACACACGGGCTAACCCTGCCCTCTTCCCCTTCGTTGAAGCCACG
CTTTCCCGGCAAGCCGCGGATGTGTGTTAGTGGCAAGAGCTGGCTGCTTT
ATATGTTCGGACAGGCCACTTACACGAAGCCGCTTTTTGTTACGAGGAGC
TTGTTCTCTGCAGCCCAGCCAATTTTGCCTTTCACGTTGCATTGGCCGAG
GCGTATGTGGGAATAGGCGGAGGCGAATCTTTGAGGCTAGCACGGAAGCA
TTACGCGCAGGCGATGGAGTTGCATGGGGGGGATGATAATTTGCGAGCCC
TGTACGGAATGTGTGCGGTGGTATGGAAGCGGTGGGTGGCTTTGGCCAAG
GCCGAGGGGGACTTGCCCGAGGCGATAAAGCGCTGCAACGAGTATCTCAA
GGTCTTCCAGGGCGACACTAGCGCGACTTCGCTGAGACTTCTACAAAAGA
AATTCCCGGATAGCGCACGGGTTGGACGATTGGAGGGGATGATATGCGAG
GCAGAGGGAGATTTTGAACAGGCTGCAAAGGTGTATCTGGATCTGCGGGA
GCGATACCCTACGGACCCGCTTGGCCCGTGTACGAGCAGGTTTTCCTGGC
GGCCTTGGACCTTGGTGAGACGCTGCTGGCAGAGATTCGTGCATCGACAG
AAGTCGTGCAGCATGGGCGAGATTTTGTCATGGAGGGCAAGGGGAGCAGC
CTGGGGGACGAAGATGGAAGGTCTCGACCAAGTGCTGAAGCAGGGCGACT
CGACGGCAGTCCTAAAGTACATACGGCATCATAGGACATGCCACGCCCTG
GCCCGCAGCAGCAGCAGCGCAAGCGACGAAACAGACAGCCGTGTCAATGC
TGCCCTTTTCAATCTGGCGGGGGACAAGCTCAAGGAACACTACACACGGG
CTAACCCTGCCCTCTTCCCCTTCGTTGAAGCCACGCTTTCCCGGCAAGCC
GCGGATGTGTGTTAGTGGCAAGAGCTGGCTGCTTTATATGTTCGGACAGG
CCACTTACACGAAGCCGCTTTTTGTTACGAGGAGCTTGTTCTCTGCAGCC
CAGCCAATTTTGCCTTTCACGTTGCATTGGCCGAGGCGTATGTGGGAATA
GGCGGAGGCGAATCTTTGAGGCTAGCACGGAAGCATTACGCGCAGGCGAT
GGAGTTGCATGGGGGGGATGATAATTTGCGAGCCCTGTACGGAATGTGTG
CGGTGGTATGGAAGCGGTGGGTGGCTTTGGCCAAGGCCGAGGGGGACTTG
CCCGAGGCGATAAAGCGCTGCAACGAGTATCTCAAGGTCTTCCAGGGCGA
CACTAGCGCGACTTCGCTGAGACTTCTACAAAAGAAATTCCCGGATAGCG
CACGGGTTGGACGATTGGAGGGGATGATATGCGAGGCAGAGGGAGATTTT
GAACAGGCTGCAAAGGTGTATCTGGATCTGCGGGAGCGATACCCTACGGA
CCCGCTTGGCCCGTGTACGAGCAGGTTTTCCTGGCGGCCTTGGACCTTGG
TGAGACGCTGCTGGCAGAGATTCGTGCATCGACAGAAGTCGTGCAGCATG
GGCGAGATTTTGTCATGGAGGGCAAGGGGAGCAGCCTGGGGGACGAAGAT
GGAAGGTCTCGACCAAGTGCTGAAGCAGGGCGACTCGACGGCAGTCCTAA
AGTACATACGGCATCATAGGACATGCCACGCCCTGGCCCGCAGCAGCAGC
AGCGCAAGCGACGAAACAGACAGCCGTGTCAATGCTGCCCTTTTCAATCT
GGCGGGGGACAAGCTCAAGGAACACTACACACGGGCTAACCCTGCCCTCT
TCCCCTTCGTTGAAGCCACGCTTTCCCGGCAAGCCGCGGATGTGTGTTAG
TGGCAAGAGCTGGCTGCTTTATATGTTCGGACAGGCCACTTACACGAAGC
CGCTTTTTGTTACGAGGAGCTTGTTCTCTGCAGCCCAGCCAATTTTGCCT
TTCACGTTGCATTGGCCGAGGCGTATGTGGGAATAGGCGGAGGCGAATCT
TTGAGGCTAGCACGGAAGCATTACGCGCAGGCGATGGAGTTGCATGGGGG
GGATGATAATTTGCGAGCCCTGTACGGAATGTGTGCGGTGGTATGGAAGC
GGTGGGTGGCTTTGGCCAAGGCCGAGGGGGACTTGCCCGAGGCGATAAAG
CGCTGCAACGAGTATCTCAAGGTCTTCCAGGGCGACACTAGCGCGACTTC
GCTGAGACTTCTACAAAAGAAATTCCCGGATAGCGCACGGGTTGGACGAT
TGGAGGGGATGATATGCGAGGCAGAGGGAGATTTTGAACAGGCTGCAAAG
GTGTATCTGGATCTGCGGGAGCGATACCCTACGGACCCGCTTGGCCCGTG
TACGAGCAGGTTTTCCTGGCGGCCTTGGACCTTGGTGAGACGCTGCTGGC
AGAGATTCGTGCATCGACAGAAGTCGTGCAGCATGGGCGAGATTTTGTCA
TGGAGGGCAAGGGGAGCAGCCTGGGGGACGAAGATGGAAGGTCTCGACCA
AGTGCTGAAGCAGGGCGACTCGACGGCAGTCCTAAAGTACATACGGCATC
ATAGGACATGCCACGCCCTGGCCCGCAGCAGCAGCAGCGCAAGCGACGAA
ACAGACAGCCGTGTCAATGCTGCCCTTTTCAATCTGGCGGGGGACAAGCT
CAAGGAACACTACACACGGGCTAACCCTGCCCTCTTCCCCTTCGTTGAAG
CCACGCTTTCCCGGCAAGCCGCGGATGTGTGTTAGTGGCAAGAGCTGGCT
GCTTTATATGTTCGGACAGGCCACTTACACGAAGCCGCTTTTTGTTACGA
GGAGCTTGTTCTCTGCAGCCCAGCCAATTTTGCCTTTCACGTTGCATTGG
CCGAGGCGTATGTGGGAATAGGCGGAGGCGAATCTTTGAGGCTAGCACGG
AAGCATTACGCGCAGGCGATGGAGTTGCATGGGGGGGATGATAATTTGCG
AGCCCTGTACGGAATGTGTGCGGTGGTATGGAAGCGGTGGGTGGCTTTGG
CCAAGGCCGAGGGGGACTTGCCCGAGGCGATAAAGCGCTGCAACGAGTAT
CTCAAGGTCTTCCAGGGCGACACTAGCGCGACTTCGCTGAGACTTCTACA
AAAGAAATTCCCGGATAGCGCACGGGTTGGACGATTGGAGGGGATGATAT
GCGAGGCAGAGGGAGATTTTGAACAGGCTGCAAAGGTGTATCTGGATCTG
CGGGAGCGATACCCTACGGACCCGCTTGGCCCGTGTACGAGCAGGTTTTC
CTGGCGGCCTTGGACCTTGGTGAGACGCTGCTGGCAGAGATTCGTGCATC
GACAGAAGTCGTGCAGCATGGGCGAGATTTTGTCATGGAGGGCAAGGGGA
GCAGCCTGGGGGACGAAGATGGAAGGTCTCGACCAAGTGCTGAAGCAGGG
CGACTCGACGGCAGTCCTAAAGTACATACGGCATCATAGGACATGCCACG
CCCTGGCCCGCAGCAGCAGCAGCGCAAGCGACGAAACAGACAGCCGTGTC
AATGCTGCCCTTTTCAATCTGGCGGGGGACAAGCTCAAGGAACACTACAC
ACGGGCTAACCCTGCCCTCTTCCCCTTCGTTGAAGCCACGCTTTCCCGGC
AAGCCGCGGATGTGTGTTAGTGGCAAGAGCTGGCTGCTTTATATGTTCGG
ACAGGCCACTTACACGAAGCCGCTTTTTGTTACGAGGAGCTTGTTCTCTG
CAGCCCAGCCAATTTTGCCTTTCACGTTGCATTGGCCGAGGCGTATGTGG
GAATAGGCGGAGGCGAATCTTTGAGGCTAGCACGGAAGCATTACGCGCAG
GCGATGGAGTTGCATGGGGGGGATGATAATTTGCGAGCCCTGTACGGAAT
GTGTGCGGTGGTATGGAAGCGGTGGGTGGCTTTGGCCAAGGCCGAGGGGG
ACTTGCCCGAGGCGATAAAGCGCTGCAACGAGTATCTCAAGGTCTTCCAG
GGCGACACTAGCGCGACTTCGCTGAGACTTCTACAAAAGAAATTCCCGGA
TAGCGCACGGGTTGGACGATTGGAGGGGATGATATGCGAGGCAGAGGGAG
ATTTTGAACAGGCTGCAAAGGTGTATCTGGATCTGCGGGAGCGATACCCT
ACGGACCCGCTTGGCCCGTGTACGAGCAGGTTTTCCTGGCGGCCTTGGAC
CTTGGTGAGACGCTGCTGGCAGAGATTCGTGCATCGACAGAAGTCGTGCA
GCATGGGCGAGATTTTGTCATGGAGGGCAAGGGGAGCAGCCTGGGGGACG
AAGATGGAAGGTCTCGACCAAGTGCTGAAGCAGGGCGACTCGACGGCAGT
CCTAAAGTACATACGGCATCATAGGACATGCCACGCCCTGGCCCGCAGCA
GCAGCAGCGCAAGCGACGAAACAGACAGCCGTGTCAATGCTGCCCTTTTC
AATCTGGCGGGGGACAAGCTCAAGGAACACTACACACGGGCTAACCCTGC
CCTCTTCCCCTTCGTTGAAGCCACGCTTTCCCGGCAAGCCGCGGATGTGT
GTTAGTGGCAAGAGCTGGCTGCTTTATATGTTCGGACAGGCCACTTACAC
GAAGCCGCTTTTTGTTACGAGGAGCTTGTTCTCTGCAGCCCAGCCAATTT
TGCCTTTCACGTTGCATTGGCCGAGGCGTATGTGGGAATAGGCGGAGGCG
AATCTTTGAGGCTAGCACGGAAGCATTACGCGCAGGCGATGGAGTTGCAT
GGGGGGGATGATAATTTGCGAGCCCTGTACGGAATGTGTGCGGTGGTATG
GAAGCGGTGGGTGGCTTTGGCCAAGGCCGAGGGGGACTTGCCCGAGGCGA
TAAAGCGCTGCAACGAGTATCTCAAGGTCTTCCAGGGCGACACTAGCGCG
ACTTCGCTGAGACTTCTACAAAAGAAATTCCCGGATAGCGCACGGGTTGG
ACGATTGGAGGGGATGATATGCGAGGCAGAGGGAGATTTTGAACAGGCTG
CAAAGGTGTATCTGGATCTGCGGGAGCGATACCCTACGGACCCGCTTGGC
CCGTGTACGAGCAGGTTTTCCTGGCGGCCTTGGACCTTGGTGAGACGCTG
CTGGCAGAGATTCGTGCATCGACAGAAGTCGTGCAGCATGGGCGAGATTT
TGTCATGGAGGGCAAGGGGAGCAGCCTGGGGGACGAAGATGGAAGGTCTC
GACCAAGTGCTGAAGCAGGGCGACTCGACGGCAGTCCTAAAGTACATACG
GCATCATAGGACATGCCACGCCCTGGCCCGCAGCAGCAGCAGCGCAAGCG
ACGAAACAGACAGCCGTGTCAATGCTGCCCTTTTCAATCTGGCGGGGGAC
AAGCTCAAGGAACACTACACACGGGCTAACCCTGCCCTCTTCCCCTTCGT
TGAAGCCACGCTTTCCCGGCAAGCCGCGGATGTGTGTTAGTGGCAAGAGC
TGGCTGCTTTATATGTTCGGACAGGCCACTTACACGAAGCCGCTTTTTGT
TACGAGGAGCTTGTTCTCTGCAGCCCAGCCAATTTTGCCTTTCACGTTGC
ATTGGCCGAGGCGTATGTGGGAATAGGCGGAGGCGAATCTTTGAGGCTAG
CACGGAAGCATTACGCGCAGGCGATGGAGTTGCATGGGGGGGATGATAAT
TTGCGAGCCCTGTACGGAATGTGTGCGGTGGTATGGAAGCGGTGGGTGGC
TTTGGCCAAGGCCGAGGGGGACTTGCCCGAGGCGATAAAGCGCTGCAACG
AGTATCTCAAGGTCTTCCAGGGCGACACTAGCGCGACTTCGCTGAGACTT
CTACAAAAGAAATTCCCGGATAGCGCACGGGTTGGACGATTGGAGGGGAT
GATATGCGAGGCAGAGGGAGATTTTGAACAGGCTGCAAAGGTGTATCTGG
ATCTGCGGGAGCGATACCCTACGGACCCGCTTGGCCCGTGTACGAGCAGG
TTTTCCTGGCGGCCTTGGACCTTGGTGAGACGCTGCTGGCAGAGATTCGT
GCATCGACAGAAGTCGTGCAGCATGGGCGAGATTTTGTCATGGAGGGCAA
GGGGAGCAGCCTGGGGGACGAAGATGGAAGGTCTCGACCAAGTGCTGAAG
CAGGGCGACTCGACGGCAGTCCTAAAGTACATACGGCATCATAGG back to top
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