jgi.p|Nanoce1779_2|613373, mRNA_10734 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613373
Unique NamemRNA_10734
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1263
Alignment locationscaffold_73:29681..31132 -

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Properties
Property NameValue
TranscriptId613459
TrackFilteredModels2
ProteinId613373
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_73supercontigscaffold_73:29681..31132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613373gene_10734Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613373mRNA_10734-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10734CDS_10734Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10734 ID=mRNA_10734|Name=jgi.p|Nanoce1779_2|613373|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp
CCTCCTGCTGGCCCTCTCTCTTTATCTCATTGGATTCTTCAACACCCCTC
CCTCCCTCCTTTTCTCTTTCCCCACACTACTTACTGCGGAGTGGGGAAAC
CACGACCACCCCATTATCTCGAGGCAGGCCTAAGACTGAATTATTGACCT
GCTGCTCACCACATCTGAAAATCTCCCTCTCTCCCTTCCTCGTTTACTTG
TTCAGCGGGGAAAGCCTCAACCCTCCGCGGCAAGCAAGACTTTTCACTAC
TTGATGCACTCGCACCAAGTCATCGACCTGCTCGTCATCCTCCCCTTCTT
CCTCACATACTTCATCTCGTCGGTAGACGTGGTCCACTGGCGACTCCTCC
GGATTACGCGGGTATTGCGAGTGCTGAAACTAAGCCGGTATTCGTCCGGG
GGCGAACTAGTGTGGAACACACTCAAGAACTCAGGTCCATCGCTGATACT
GCTGACTCTCTTTACGCTTGTTCTTTGCTTTGTGATGGGTGCGTTGGTGT
TTTATTTCGAAGGCGGCGTCTACCGGGTCACGCCCGAACACCCTGAGGGC
GCGTTTTATCGCCCGGCCTTAGAGGGAGGCGAAGAAGTCACCCCTTTCAC
GTCTGTCCCTGTGTCAGCTTATTGGGTTATTGTCACTGCTACTACCGTCG
GATACGGTGATCTCTATCCTACTTCGGGCCCAGGACAATTCGTGGCTGCA
GCTTCGGCCTACTGCGGCATCGTATTCCTCTCGTTGCCCATCGCCATCGT
GGTCAAACAGTTTAACATCGCTTACGACAAGGATGAAGACGAGAAGGCCG
TCGAAGAGCAACTAAGAAAAGAGGAGATCGAGAAGCAAAAGGCGAACGAG
CGCCCTACCGCTGTGAGTGCTGCAGAAGCGAAGTGGAAGAGGAAACACGT
GCGGAAATTAATGGAAATGCGGGAGTTTATTCACGAACAAATGAAGCAGG
CAACCCCGCTTTTCGAGACGATGTGGGAGGAATTTGTTGCCAAGCACTTA
CTGGAACGCTTGCAGGAATATGAAAGACAACCGATGCGGGACGGAACGCA
ATCTGTGTAGAGTGGGAAGGAAAGAGAGAATGAGATAGCGTCCGATAGAC
TTGTTCATACCAAAGAAAGAGAGGGGATCGCAGATAGCAGGGAAATGGAC
AGGTAGGATGGAGAAATTGATCCTCATTTTAAAAGATGATGAATGTGCAG
GAGCGTGACAAGGAAACTGAATGGAAAAAGAAGAAAGATGCAAAGGACAA
TGAAATCGATGGG
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protein sequence of jgi.p|Nanoce1779_2|613373

>mRNA_10734-protein ID=mRNA_10734-protein|Name=jgi.p|Nanoce1779_2|613373|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MHSHQVIDLLVILPFFLTYFISSVDVVHWRLLRITRVLRVLKLSRYSSGG
ELVWNTLKNSGPSLILLTLFTLVLCFVMGALVFYFEGGVYRVTPEHPEGA
FYRPALEGGEEVTPFTSVPVSAYWVIVTATTVGYGDLYPTSGPGQFVAAA
SAYCGIVFLSLPIAIVVKQFNIAYDKDEDEKAVEEQLRKEEIEKQKANER
PTAVSAAEAKWKRKHVRKLMEMREFIHEQMKQATPLFETMWEEFVAKHLL
ERLQEYERQPMRDGTQSV*
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mRNA from alignment at scaffold_73:29681..31132-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10734 ID=mRNA_10734|Name=jgi.p|Nanoce1779_2|613373|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp|location=Sequence derived from alignment at scaffold_73:29681..31132- (Nannochloropsis oceanica)
CCTCCTGCTGGCCCTCTCTCTTTATCTCATTGGATTCTTCAACACCCCTC
CCTCCCTCCTTTTCTCTTTCCCCACACTACTTACTGCGGAGTGGGGAAAC
CACGACCACCCCATTATCTCGAGGCAGGCCTAAGACTGAATTATTGACCT
GCTGCTCACCACATCTGAAAATCTCCCTCTCTCCCTTCCTCGTTTACTTG
TTCAGCGGGGAAAGCCTCAACCCTCCGCGGCAAGCAAGACTTTTCACTAC
TTGATGCACTCGCACCAAGTCATCGACCTGCTCGTCATCCTCCCCTTCTT
CCTCACATACTTCATCTCGTCGGTAGACGTGGTCCACTGGCGACTCCTCC
GGATTACGCGGTAAGGAGCGAGGGAGGGAGGGAGGGAAGGGAGGAAGGGG
AGACGGAGCAAGGAATAAATGTCTACTTTCTGTGATGAAATTGGGGTGAA
TTAGGGGAGCGAATACGAGAAGAGACAAATGAATTAAAGAAAGGAAGGAT
TATTCAGACACCACTAATGGATATATTGGATATCACACGAAACAATCAGG
GTATTGCGAGTGCTGAAACTAAGCCGGTATTCGTCCGGGGGCGAACTAGT
GTGGAACACACTCAAGAACTCAGGTCCATCGCTGATACTGCTGACTCTCT
TTACGCTTGTTCTTTGCTTTGTGATGGGTGCGTTGGTGTTTTATTTCGAA
GGCGGCGTCTACCGGGTCACGCCCGAACACCCTGAGGGCGCGTTTTATCG
CCCGGCCTTAGAGGGAGGCGAAGAAGTCACCCCTTTCACGTCTGTCCCTG
TGTCAGCTTATTGGGTTATTGTCACTGCTACTACCGTCGGATACGGTGAT
CTCTATCCTACTTCGGGCCCAGGACAATTCGTGGCTGCAGCTTCGGCCTA
CTGCGGCATCGTATTCCTCTCGTTGCCCATCGCCATCGTGGTCAAACAGT
TTAACATCGCTTACGACAAGGATGAAGACGAGAAGGCCGTCGAAGAGCAA
CTAAGAAAAGAGGAGATCGAGAAGCAAAAGGCGAACGAGCGCCCTACCGC
TGTGAGTGCTGCAGAAGCGAAGTGGAAGAGGAAACACGTGCGGAAATTAA
TGGAAATGCGGGAGTTTATTCACGAACAAATGAAGCAGGCAACCCCGCTT
TTCGAGACGATGTGGGAGGAATTTGTTGCCAAGCACTTACTGGAACGCTT
GCAGGAATATGAAAGACAACCGATGCGGGACGGAACGCAATCTGTGTAGA
GTGGGAAGGAAAGAGAGAATGAGATAGCGTCCGATAGACTTGTTCATACC
AAAGAAAGAGAGGGGATCGCAGATAGCAGGGAAATGGACAGGTAGGATGG
AGAAATTGATCCTCATTTTAAAAGATGATGAATGTGCAGGAGCGTGACAA
GGAAACTGAATGGAAAAAGAAGAAAGATGCAAAGGACAATGAAATCGATG
GG
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Coding sequence (CDS) from alignment at scaffold_73:29681..31132-

>mRNA_10734 ID=mRNA_10734|Name=jgi.p|Nanoce1779_2|613373|organism=Nannochloropsis oceanica|type=CDS|length=1614bp|location=Sequence derived from alignment at scaffold_73:29681..31132- (Nannochloropsis oceanica)
GGTATTGCGAGTGCTGAAACTAAGCCGGTATTCGTCCGGGGGCGAACTAG
TGTGGAACACACTCAAGAACTCAGGTCCATCGCTGATACTGCTGACTCTC
TTTACGCTTGTTCTTTGCTTTGTGATGGGTGCGTTGGTGTTTTATTTCGA
AGGCGGCGTCTACCGGGTCACGCCCGAACACCCTGAGGGCGCGTTTTATC
GCCCGGCCTTAGAGGGAGGCGAAGAAGTCACCCCTTTCACGTCTGTCCCT
GTGTCAGCTTATTGGGTTATTGTCACTGCTACTACCGTCGGATACGGTGA
TCTCTATCCTACTTCGGGCCCAGGACAATTCGTGGCTGCAGCTTCGGCCT
ACTGCGGCATCGTATTCCTCTCGTTGCCCATCGCCATCGTGGTCAAACAG
TTTAACATCGCTTACGACAAGGATGAAGACGAGAAGGCCGTCGAAGAGCA
ACTAAGAAAAGAGGAGATCGAGAAGCAAAAGGCGAACGAGCGCCCTACCG
CTGTGAGTGCTGCAGAAGCGAAGTGGAAGAGGAAACACGTGCGGAAATTA
ATGGAAATGCGGGAGTTTATTCACGAACAAATGAAGCAGGCAACCCCGCT
TTTCGAGACGATGTGGGAGGAATTTGTTGCCAAGCACTTACTGGAACGCT
TGCAGGAATATGAAAGACAACCGATGCGGGACGGAACGCAATCTGTGTAG
ATGCACTCGCACCAAGTCATCGACCTGCTCGTCATCCTCCCCTTCTTCCT
CACATACTTCATCTCGTCGGTAGACGTGGTCCACTGGCGACTCCTCCGGA
TTACGCGGGTATTGCGAGTGCTGAAACTAAGCCGGTATTCGTCCGGGGGC
GAACTAGTGTGGAACACACTCAAGAACTCAGGTCCATCGCTGATACTGCT
GACTCTCTTTACGCTTGTTCTTTGCTTTGTGATGGGTGCGTTGGTGTTTT
ATTTCGAAGGCGGCGTCTACCGGGTCACGCCCGAACACCCTGAGGGCGCG
TTTTATCGCCCGGCCTTAGAGGGAGGCGAAGAAGTCACCCCTTTCACGTC
TGTCCCTGTGTCAGCTTATTGGGTTATTGTCACTGCTACTACCGTCGGAT
ACGGTGATCTCTATCCTACTTCGGGCCCAGGACAATTCGTGGCTGCAGCT
TCGGCCTACTGCGGCATCGTATTCCTCTCGTTGCCCATCGCCATCGTGGT
CAAACAGTTTAACATCGCTTACGACAAGGATGAAGACGAGAAGGCCGTCG
AAGAGCAACTAAGAAAAGAGGAGATCGAGAAGCAAAAGGCGAACGAGCGC
CCTACCGCTGTGAGTGCTGCAGAAGCGAAGTGGAAGAGGAAACACGTGCG
GAAATTAATGGAAATGCGGGAGTTTATTCACGAACAAATGAAGCAGGCAA
CCCCGCTTTTCGAGACGATGTGGGAGGAATTTGTTGCCAAGCACTTACTG
GAACGCTTGCAGGAATATGAAAGACAACCGATGCGGGACGGAACGCAATC
TGTGTAGATGCACTCGCACCAAGTCATCGACCTGCTCGTCATCCTCCCCT
TCTTCCTCACATACTTCATCTCGTCGGTAGACGTGGTCCACTGGCGACTC
CTCCGGATTACGCG
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Synonyms
Publications