jgi.p|Nanoce1779_2|540554, mRNA_3913 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|540554
Unique Name	mRNA_3913
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2563
Alignment location	scaffold_8:384412..387138 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	540640
Track	FilteredModels2
ProteinId	540554

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:384412..387138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|540554	gene_3913	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|540554	mRNA_3913-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3913	CDS_3913	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:384412..387138+
coding sequence from alignment at scaffold_8:384412..387138+

mRNA sequence

>mRNA_3913 ID=mRNA_3913|Name=jgi.p|Nanoce1779_2|540554|organism=Nannochloropsis oceanica|type=mRNA|length=2563bp
CAGCAGGAGGAGCAGCAGGAGGAGAAGCAGGAGGAAGAGCAGTGGCAAGG
GCATCTGGAGCAGCAGGAGGAGCAGAAAAGTAAGGCTGCTGTGGTGAAGC
CCCCGACTGTCAAATCGAAGACAACTGTGGCCTTGCCATCCTCCTCCTCC
TCCTTGCTGGTCATTTCAGGCGCATTACAAGGAGGAAAAAATAGAGGGGG
AGGATTAGGAGGAGGATCATCACGACCGCGACCTGACCTCACCCAGAAAC
AGCAAGAGCAACAAGTTCAGGTGCACCGACGGCAGCTACAGCGACAGCTT
CTCGAGCAGGCCCGCCGAGGAAAATCCACGCTTTTTCCAACCACCTCATT
CACCACTTCCCTTACCGCCCCTGGAGTTGCCGGTGCACGGGCTGATGCTG
GTGTTGCTGCTGGTGCTAGTGTTGCCGCAGCACGTACCCGTCCTCCTCAC
CGTCGGGACTCCTCTGGAGGGGGCATTAGGCCTCAAAGGACTGATGACGA
TTTTATTATTTTCAGACAGTTGAAAGATGTGGCCAGCAATGCCCCTGCAG
TCACTCGGGAATTTCACTCTCATATCGTAAGGTGGAATGTGGGTGATTTG
CTGTCGTCAGAGACGAGGGAGCAGCTGCAACAGCGGCAGCTCCCAGAGCA
GAAGCAAGGGGCGGAGAGGAGCGAGGGAGGGGGGAAAAAGGCATCGTTTG
ATCCGGTGCCGTTGCGGTTTCGCGATCCGCGTCATTACCTGGATATATGG
CAACCATTGCTGTTGGAAGAGACGAAATGTGCCTTGGGTGAGGATTTGAA
GGTTGGACTGCAGACTGCTGCTGCTGTAGCTACTGCGAGGGGAGGGGGTG
GACTGCAACAGCAGCAGCAGAAAGAGCAAGAGCAAGGGCAAGGAAAGAAG
AAAGGGAGTGGTGGTGGGAATGGGCTCGTGGGAGGGATGATGCGATTGGA
ACTGCAGCATGCGATAGTGGACGCCGAGGGGGATGGATTGTGTACATTGG
CGTTTACTATACAAGACGATTGGAGGCTGGAGCAGCGGCTGAGATGTGCT
GGGAGGGGACAAGAGGTCATCTTGTTGCAGCCGTTGGGGAGGACGGGGGA
TGGTGGCGGTTGGGATCGTAGAATTTGTAGTGGCATTGGGAATTTGGGGT
TGTTGGAGGAGGGGGAGGTGGTGGAGGTCAACCACACACAATATCAGCAC
CAGTGCCAGGACCAGCAGCAGCAGACTCCTATAACCCAAGCAGCAAGTAG
CCTGCATGCAGTTGCGATATTTTTATCTGCAACCGATGCGGGAGAGATCG
GCTTGGTGAAATTCCGTGTGGCCGTTTCTCAAACCACGCCGGGGCCAGGA
GGGTTAGCCCTGAAAGACTTCAAAGTAGGCTCGAATTGGCAAGGTGTGGT
AATAGGGAGCTTGATAACAGCTGCCCGGGAATTTGCGGCCTTGAAAGAGG
TGTTAGGGTTTTGGTTGGCCCCTCGGCTGTTGCAGGGAGGGAAGGAGGCG
AGGGATGGGAAGGGAGGAGGGAGGAAGAGCTTTGCGCATTTGGTGGCGTT
GAATGGCGAGGGAATGATTGAACGATGGCGGGAGATTGAGAAGTGGGATA
AAGCGGCATCGGGGCCAGGAGGAGGAGGAGGAGAGCAGAAAATGGAGGAG
GCGGAAAAGTTATTGAGAGGAATTAGGGCGCTGAGGAAGGTGAGGGTGTC
GCAGCGTTTGCTAGCGGAGACGAGCGTGGGCAGAGAGGTAAAGGCTTTAA
AAAAGAAGTACGAAGAACTGGGAATAAATGCGATCAGAGATGCATGTGGA
CAGTTGATTCAGAACTGGCGGGAACAGATACAGTTGGAGAAAGACTGCTA
TGAGGGAGAGGTCTCCCAAACAGTTATTGCTGCTGGTGACGGTAGCTCGC
AATCGCAAGGTCGGTCGCAGGATACGATTGACGAGGAGAAGCGACGGCAG
CATAATCAGCAGCAGGAACAACAACAACAGCCGCAGCAGAAAGAAAATCC
CAATTGGAGAACGTTGTCCATGTCGCCGTCGTCGGCAGCCTTGTTGGTGG
GTCGGGAGGGAGGAGGGACCAAAAAATGCCCGAAACACGTGCCGATGAAG
TTATGGAAGGTTTTACAACAGGAGTATAATTCGCCGCAACTCCAGGCCAT
TTCTGCTTCCTGCTTCATCAACGCCACGGCCCTCAGCCGCGGTTATGAAA
TCACGCTCCTTCAAGGCCCACCTGGTACGGGCAAAACCCGATGTATCCTC
GGTCTGCTCGCTGCCATCATGCACTCCCGCCCTCGCTCTACCTCTGTCGC
CACTGCCAGCAGCACTAACATCCGCCCAGCCCTACGCGTGGGATCTCATC
ACCACCAAGGAGAAAGGCGCATCTTGGTGTGTGCGCCCAGCAACGGCGCA
GTAGACGAGATCACTTTAAGGTTACAACGGGAAGGGCTGCTGAACGCGGA
CGGAAATAAGTACAAACCTGAGCTGGTGCGGTTGGGTGCAGTGGACCCCG
GGGCTGAAGAGGACGTGAAAGCAGCATCGCTGGAGTCAAAATTGGAGATA
GCACTGGAGAAAA

protein sequence of jgi.p|Nanoce1779_2|540554

>mRNA_3913-protein ID=mRNA_3913-protein|Name=jgi.p|Nanoce1779_2|540554|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MMRLELQHAIVDAEGDGLCTLAFTIQDDWRLEQRLRCAGRGQEVILLQPL
GRTGDGGGWDRRICSGIGNLGLLEEGEVVEVNHTQYQHQCQDQQQQTPIT
QAASSLHAVAIFLSATDAGEIGLVKFRVAVSQTTPGPGGLALKDFKVGSN
WQGVVIGSLITAAREFAALKEVLGFWLAPRLLQGGKEARDGKGGGRKSFA
HLVALNGEGMIERWREIEKWDKAASGPGGGGGEQKMEEAEKLLRGIRALR
KVRVSQRLLAETSVGREVKALKKKYEELGINAIRDACGQLIQNWREQIQL
EKDCYEGEVSQTVIAAGDGSSQSQGRSQDTIDEEKRRQHNQQQEQQQQPQ
QKENPNWRTLSMSPSSAALLVGREGGGTKKCPKHVPMKLWKVLQQEYNSP
QLQAISASCFINATALSRGYEITLLQGPPGTGKTRCILGLLAAIMHSRPR
STSVATASSTNIRPALRVGSHHHQGERRILVCAPSNGAVDEITLRLQREG
LLNADGNKYKPELVRLGAVDPGAEEDVKAASLESKLEIALEK

mRNA from alignment at scaffold_8:384412..387138+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3913 ID=mRNA_3913|Name=jgi.p|Nanoce1779_2|540554|organism=Nannochloropsis oceanica|type=mRNA|length=2727bp|location=Sequence derived from alignment at scaffold_8:384412..387138+ (Nannochloropsis oceanica)
CAGCAGGAGGAGCAGCAGGAGGAGAAGCAGGAGGAAGAGCAGTGGCAAGG
GCATCTGGAGCAGCAGGAGGAGCAGAAAAGTAAGGCTGCTGTGGTGAAGC
CCCCGACTGTCAAATCGAAGACAACTGTGGCCTTGCCATCCTCCTCCTCC
TCCTTGCTGGTCATTTCAGGCGCATTACAAGGAGGAAAAAATAGAGGGGG
AGGATTAGGAGGAGGATCATCACGACCGCGACCTGACCTCACCCAGAAAC
AGCAAGAGCAACAAGTTCAGGTGCACCGACGGCAGCTACAGCGACAGCTT
CTCGAGCAGGCCCGCCGAGGAAAATCCACGCTTTTTCCAACCACCTCATT
CACCACTTCCCTTACCGCCCCTGGAGTTGCCGGTGCACGGGCTGATGCTG
GTGTTGCTGCTGGTGCTAGTGTTGCCGCAGCACGTACCCGTCCTCCTCAC
CGTCGGGACTCCTCTGGAGGGGGCATTAGGCCTCAAAGGACTGATGACGA
TTTTATTATTTTCAGACAGTTGAAAGATGTGGCCAGCAATGCCCCTGCAG
TCACTCGGGAATTTCACTCTCATATCGTAAGGTGGAATGTGGGTGATTTG
CTGTCGTCAGAGACGAGGGAGCAGCTGCAACAGCGGCAGCTCCCAGAGCA
GAAGCAAGGGGCGGAGAGGAGCGAGGGAGGGGGGAAAAAGGCATCGTTTG
ATCCGGTGCCGTTGCGGTTTCGCGATCCGCGTCATTACCTGGATATATGG
CAACCATTGCTGTTGGAAGAGACGAAATGTGCCTTGGGTGAGGATTTGAA
GGTTGGACTGCAGACTGCTGCTGCTGTAGCTACTGCGAGGGGAGGGGGTG
GACTGCAACAGCAGCAGCAGAAAGAGCAAGAGCAAGGGCAAGGAAAGAAG
AAAGGGAGTGGTGGTGGGAATGGGCTCGTGGGAGGGATGATGCGATTGGA
ACTGCAGCATGCGATAGTGGACGCCGAGGGGGATGGATTGTGTACATTGG
CGTTTACTATACAAGACGATTGGAGGCTGGAGCAGCGGCTGAGATGTGCT
GGGAGGGGACAAGAGGTCATCTTGTTGCAGCCGTTGGGGAGGACGGGGGA
TGGTGGCGGTTGGGATCGTAGAATTTGTAGTGGCATTGGGAATTTGGGGT
TGTTGGAGGAGGGGGAGGTGGTGGAGGTCAACCACACACAATATCAGCAC
CAGTGCCAGGACCAGCAGCAGCAGACTCCTATAACCCAAGCAGCAAGTAG
CCTGCATGCAGTTGCGATATTTTTATCTGCAACCGATGCGGGAGAGATCG
GCTTGGTGAAATTCCGTGTGGCCGTTTCTCAAACCACGCCGGGGCCAGGA
GGGTTAGCCCTGAAAGACTTCAAAGTAGGCTCGAATTGGCAAGGTGTGGT
AATAGGGAGCTTGATAACAGCTGCCCGGGAATTTGCGGCCTTGAAAGAGG
TGTTAGGGTTTTGGTTGGCCCCTCGGCTGTTGCAGGGAGGGAAGGAGGCG
AGGGATGGGAAGGGAGGAGGGAGGAAGAGCTTTGCGCATTTGGTGGCGTT
GAATGGCGAGGGAATGATTGAACGATGGCGGGAGATTGAGAAGTGGGATA
AAGCGGCATCGGGGCCAGGAGGAGGAGGAGGAGAGCAGAAAATGGAGGAG
GCGGAAAAGTTATTGAGAGGAATTAGGGCGCTGAGGAAGGTGAGGGTGTC
GCAGCGTTTGCTAGCGGAGACGAGCGTGGGCAGAGAGGTAAAGGCTTTAA
AAAAGAAGTACGAAGAACTGGGAATAAATGCGATCAGAGATGCATGTGGA
CAGTTGATTCAGAACTGGCGGGAACAGATACAGTTGGAGAAAGACTGCTA
TGAGGGAGAGGTCTCCCAAACAGTTATTGCTGCTGGTGACGGTAGCTCGC
AATCGCAAGGTCGGTCGCAGGATACGATTGACGAGGAGAAGCGACGGCAG
CATAATCAGCAGCAGGAACAACAACAACAGCCGCAGCAGAAAGAAAATCC
CAATTGGAGAACGTTGTCCATGTCGCCGTCGTCGGCAGCCTTGTTGGTGG
GTCGGGAGGGAGGAGGGACCAAAAAATGCCCGAAACACGTGCCGATGAAG
TTATGGAAGGTTTTACAACAGGAGTATAATTCGCCGCAACTCCAGGTACG
TTTTGAGCGCATTTGAATGTCGTGTCTACTATCGTGGATGTCTGTCTACG
CGTGAAACGCTGATTGATTCATTTCCCTTTCTTCATCAAAGTGTGCAGGT
CTGTCTTCCATCCGTAATACCCAATCTCTTCCTCCATTCCTGCCTCCCTA
CTCTCTTAGGCCATTTCTGCTTCCTGCTTCATCAACGCCACGGCCCTCAG
CCGCGGTTATGAAATCACGCTCCTTCAAGGCCCACCTGGTACGGGCAAAA
CCCGATGTATCCTCGGTCTGCTCGCTGCCATCATGCACTCCCGCCCTCGC
TCTACCTCTGTCGCCACTGCCAGCAGCACTAACATCCGCCCAGCCCTACG
CGTGGGATCTCATCACCACCAAGGAGAAAGGCGCATCTTGGTGTGTGCGC
CCAGCAACGGCGCAGTAGACGAGATCACTTTAAGGTTACAACGGGAAGGG
CTGCTGAACGCGGACGGAAATAAGTACAAACCTGAGCTGGTGCGGTTGGG
TGCAGTGGACCCCGGGGCTGAAGAGGACGTGAAAGCAGCATCGCTGGAGT
CAAAATTGGAGATAGCACTGGAGAAAA

Coding sequence (CDS) from alignment at scaffold_8:384412..387138+

>mRNA_3913 ID=mRNA_3913|Name=jgi.p|Nanoce1779_2|540554|organism=Nannochloropsis oceanica|type=CDS|length=3252bp|location=Sequence derived from alignment at scaffold_8:384412..387138+ (Nannochloropsis oceanica)
ATGATGCGATTGGAACTGCAGCATGCGATAGTGGACGCCGAGGGGGATGG
ATTGTGTACATTGGCGTTTACTATACAAGACGATTGGAGGCTGGAGCAGC
GGCTGAGATGTGCTGGGAGGGGACAAGAGGTCATCTTGTTGCAGCCGTTG
GGGAGGACGGGGGATGGTGGCGGTTGGGATCGTAGAATTTGTAGTGGCAT
TGGGAATTTGGGGTTGTTGGAGGAGGGGGAGGTGGTGGAGGTCAACCACA
CACAATATCAGCACCAGTGCCAGGACCAGCAGCAGCAGACTCCTATAACC
CAAGCAGCAAGTAGCCTGCATGCAGTTGCGATATTTTTATCTGCAACCGA
TGCGGGAGAGATCGGCTTGGTGAAATTCCGTGTGGCCGTTTCTCAAACCA
CGCCGGGGCCAGGAGGGTTAGCCCTGAAAGACTTCAAAGTAGGCTCGAAT
TGGCAAGGTGTGGTAATAGGGAGCTTGATAACAGCTGCCCGGGAATTTGC
GGCCTTGAAAGAGGTGTTAGGGTTTTGGTTGGCCCCTCGGCTGTTGCAGG
GAGGGAAGGAGGCGAGGGATGGGAAGGGAGGAGGGAGGAAGAGCTTTGCG
CATTTGGTGGCGTTGAATGGCGAGGGAATGATTGAACGATGGCGGGAGAT
TGAGAAGTGGGATAAAGCGGCATCGGGGCCAGGAGGAGGAGGAGGAGAGC
AGAAAATGGAGGAGGCGGAAAAGTTATTGAGAGGAATTAGGGCGCTGAGG
AAGGTGAGGGTGTCGCAGCGTTTGCTAGCGGAGACGAGCGTGGGCAGAGA
GGTAAAGGCTTTAAAAAAGAAGTACGAAGAACTGGGAATAAATGCGATCA
GAGATGCATGTGGACAGTTGATTCAGAACTGGCGGGAACAGATACAGTTG
GAGAAAGACTGCTATGAGGGAGAGGTCTCCCAAACAGTTATTGCTGCTGG
TGACGGTAGCTCGCAATCGCAAGGTCGGTCGCAGGATACGATTGACGAGG
AGAAGCGACGGCAGCATAATCAGCAGCAGGAACAACAACAACAGCCGCAG
CAGAAAGAAAATCCCAATTGGAGAACGTTGTCCATGTCGCCGTCGTCGGC
AGCCTTGTTGGTGGGTCGGGAGGGAGGAGGGACCAAAAAATGCCCGAAAC
ACGTGCCGATGAAGTTATGGAAGGTTTTACAACAGGAGTATAATTCGCCG
CAACTCCAGGCCATTTCTGCTTCCTGCTTCATCAACGCCACGGCCCTCAG
CCGCGGTTATGAAATCACGCTCCTTCAAGGCCCACCTGGTACGGGCAAAA
CCCGATGTATCCTCGGTCTGCTCGCTGCCATCATGCACTCCCGCCCTCGC
TCTACCTCTGTCGCCACTGCCAGCAGCACTAACATCCGCCCAGCCCTACG
CGTGGGATCTCATCACCACCAAGGAGAAAGGCGCATCTTGGTGTGTGCGC
CCAGCAACGGCGCAGTAGACGAGATCACTTTAAGGTTACAACGGGAAGGG
CTGCTGAACGCGGACGGAAATAAGTACAAACCTGAGCTGGTGCGGTTGGG
TGCAGTGGACCCCGGGGCTGAAGAGGACGTGAAAGCAGCATCGCTGGAGT
CAAAATTGGAGATAGCACTGGAGAAAATGATGCGATTGGAACTGCAGCAT
GCGATAGTGGACGCCGAGGGGGATGGATTGTGTACATTGGCGTTTACTAT
ACAAGACGATTGGAGGCTGGAGCAGCGGCTGAGATGTGCTGGGAGGGGAC
AAGAGGTCATCTTGTTGCAGCCGTTGGGGAGGACGGGGGATGGTGGCGGT
TGGGATCGTAGAATTTGTAGTGGCATTGGGAATTTGGGGTTGTTGGAGGA
GGGGGAGGTGGTGGAGGTCAACCACACACAATATCAGCACCAGTGCCAGG
ACCAGCAGCAGCAGACTCCTATAACCCAAGCAGCAAGTAGCCTGCATGCA
GTTGCGATATTTTTATCTGCAACCGATGCGGGAGAGATCGGCTTGGTGAA
ATTCCGTGTGGCCGTTTCTCAAACCACGCCGGGGCCAGGAGGGTTAGCCC
TGAAAGACTTCAAAGTAGGCTCGAATTGGCAAGGTGTGGTAATAGGGAGC
TTGATAACAGCTGCCCGGGAATTTGCGGCCTTGAAAGAGGTGTTAGGGTT
TTGGTTGGCCCCTCGGCTGTTGCAGGGAGGGAAGGAGGCGAGGGATGGGA
AGGGAGGAGGGAGGAAGAGCTTTGCGCATTTGGTGGCGTTGAATGGCGAG
GGAATGATTGAACGATGGCGGGAGATTGAGAAGTGGGATAAAGCGGCATC
GGGGCCAGGAGGAGGAGGAGGAGAGCAGAAAATGGAGGAGGCGGAAAAGT
TATTGAGAGGAATTAGGGCGCTGAGGAAGGTGAGGGTGTCGCAGCGTTTG
CTAGCGGAGACGAGCGTGGGCAGAGAGGTAAAGGCTTTAAAAAAGAAGTA
CGAAGAACTGGGAATAAATGCGATCAGAGATGCATGTGGACAGTTGATTC
AGAACTGGCGGGAACAGATACAGTTGGAGAAAGACTGCTATGAGGGAGAG
GTCTCCCAAACAGTTATTGCTGCTGGTGACGGTAGCTCGCAATCGCAAGG
TCGGTCGCAGGATACGATTGACGAGGAGAAGCGACGGCAGCATAATCAGC
AGCAGGAACAACAACAACAGCCGCAGCAGAAAGAAAATCCCAATTGGAGA
ACGTTGTCCATGTCGCCGTCGTCGGCAGCCTTGTTGGTGGGTCGGGAGGG
AGGAGGGACCAAAAAATGCCCGAAACACGTGCCGATGAAGTTATGGAAGG
TTTTACAACAGGAGTATAATTCGCCGCAACTCCAGGCCATTTCTGCTTCC
TGCTTCATCAACGCCACGGCCCTCAGCCGCGGTTATGAAATCACGCTCCT
TCAAGGCCCACCTGGTACGGGCAAAACCCGATGTATCCTCGGTCTGCTCG
CTGCCATCATGCACTCCCGCCCTCGCTCTACCTCTGTCGCCACTGCCAGC
AGCACTAACATCCGCCCAGCCCTACGCGTGGGATCTCATCACCACCAAGG
AGAAAGGCGCATCTTGGTGTGTGCGCCCAGCAACGGCGCAGTAGACGAGA
TCACTTTAAGGTTACAACGGGAAGGGCTGCTGAACGCGGACGGAAATAAG
TACAAACCTGAGCTGGTGCGGTTGGGTGCAGTGGACCCCGGGGCTGAAGA
GGACGTGAAAGCAGCATCGCTGGAGTCAAAATTGGAGATAGCACTGGAGA
AA

Synonyms

Publications