jgi.p|Nanoce1779_2|573319, mRNA_1754 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573319
Unique NamemRNA_1754
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length472
Alignment locationscaffold_1:1407936..1408407 +

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Properties
Property NameValue
TranscriptId573405
TrackFilteredModels2
ProteinId573319
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1407936..1408407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573319gene_1754Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573319mRNA_1754-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1754CDS_1754Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1754 ID=mRNA_1754|Name=jgi.p|Nanoce1779_2|573319|organism=Nannochloropsis oceanica|type=mRNA|length=472bp
GCGTGAGTGGTAATTTAGATATCCAATGCTGCTCTGGGGTGGGGAGGTTT
TCCAACCGCAGTTCTTGATCGAGGACTCCAGTCAATTCGACTCAGCTTGG
TCTAGGGTAGGAAGATAAGTGAAAAAGCCGCTCAAGCCCCGAGATGGTTC
AAATGCACTAAGACCTGAGCGCCCTGCCCATGGGAAGTGTGATGCTCTGC
ACGGTACTTTGCCGGCCTGCTTCGGGACGCGCCATAAAAAGCCTTCACGT
GTCAAAACCTGCTCGCGACATAAATGAGAGGGTGGCGAGGCATCTTACAA
GAATGCTTGTGATAGTTTCGACAAGGATTGTGTATAAGTTGCTGGAAGCA
TCGATTTATACGCAATTTTGCACCGGGCAATCCATGTGGGCCGTCAAACC
GCCACAGTGTTCGTCGTCACCGTCCGACGCCCACAACTCCCAAACGCCGC
CATCCTTTCAATAAAATAAATA
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protein sequence of jgi.p|Nanoce1779_2|573319

>mRNA_1754-protein ID=mRNA_1754-protein|Name=jgi.p|Nanoce1779_2|573319|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MGSVMLCTVLCRPASGRAIKSLHVSKPARDINERVARHLTRMLVIVSTRI
VYKLLEASIYTQFCTGQSMWAVKPPQCSSSPSDAHNSQTPPSFQ*
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mRNA from alignment at scaffold_1:1407936..1408407+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1754 ID=mRNA_1754|Name=jgi.p|Nanoce1779_2|573319|organism=Nannochloropsis oceanica|type=mRNA|length=472bp|location=Sequence derived from alignment at scaffold_1:1407936..1408407+ (Nannochloropsis oceanica)
GCGTGAGTGGTAATTTAGATATCCAATGCTGCTCTGGGGTGGGGAGGTTT
TCCAACCGCAGTTCTTGATCGAGGACTCCAGTCAATTCGACTCAGCTTGG
TCTAGGGTAGGAAGATAAGTGAAAAAGCCGCTCAAGCCCCGAGATGGTTC
AAATGCACTAAGACCTGAGCGCCCTGCCCATGGGAAGTGTGATGCTCTGC
ACGGTACTTTGCCGGCCTGCTTCGGGACGCGCCATAAAAAGCCTTCACGT
GTCAAAACCTGCTCGCGACATAAATGAGAGGGTGGCGAGGCATCTTACAA
GAATGCTTGTGATAGTTTCGACAAGGATTGTGTATAAGTTGCTGGAAGCA
TCGATTTATACGCAATTTTGCACCGGGCAATCCATGTGGGCCGTCAAACC
GCCACAGTGTTCGTCGTCACCGTCCGACGCCCACAACTCCCAAACGCCGC
CATCCTTTCAATAAAATAAATA
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Coding sequence (CDS) from alignment at scaffold_1:1407936..1408407+

>mRNA_1754 ID=mRNA_1754|Name=jgi.p|Nanoce1779_2|573319|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_1:1407936..1408407+ (Nannochloropsis oceanica)
ATGGGAAGTGTGATGCTCTGCACGGTACTTTGCCGGCCTGCTTCGGGACG
CGCCATAAAAAGCCTTCACGTGTCAAAACCTGCTCGCGACATAAATGAGA
GGGTGGCGAGGCATCTTACAAGAATGCTTGTGATAGTTTCGACAAGGATT
GTGTATAAGTTGCTGGAAGCATCGATTTATACGCAATTTTGCACCGGGCA
ATCCATGTGGGCCGTCAAACCGCCACAGTGTTCGTCGTCACCGTCCGACG
CCCACAACTCCCAAACGCCGCCATCCTTTCAATAA
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Synonyms
Publications