jgi.p|Nanoce1779_2|573495, mRNA_1791 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573495
Unique NamemRNA_1791
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1011
Alignment locationscaffold_1:1528041..1529051 -

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Properties
Property NameValue
TranscriptId573581
TrackFilteredModels2
ProteinId573495
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1528041..1529051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573495gene_1791Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573495mRNA_1791-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1791CDS_1791Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1791 ID=mRNA_1791|Name=jgi.p|Nanoce1779_2|573495|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
ACAGGGGTTATCATGCGCAACGACCTCCTTCCCTGCTTGACGCTTCTGCT
TCTCTCGATTATTATCACCACCGTCTTGGCCTACTCTCCACCGCAAGGTC
CATTCCGCGCTCATCTTTTATCTCTTTCGCCGGTCTCATATACTCGCGCT
TCGTTTTTGACCGATTCATATCTGGGTGCGACCGCTGCTGCCTTGGTAGG
GCTTGCTCCCGCCTCGAACGCAGCTTCCCCTCCCTCCTCCGATACGAGGA
TAGGTCTAGAAGGCGGGCCCACGAGGCGTGAGAAGAGCCGGCCTGCCTTG
CTGGAGGCTTTAGTATACCTACCCAAAGGCGTGAACTATTGGGGCGAGCT
CTTGGCTGGCCCCGACGAGGAGGAGCAGGAGGATGATGGCTCTATGTCTA
GCAGCGCTGGCACTGGCACGGAAGCCCTCTTTCTGACGGCCTCCTTCCAA
GGCAAACTCGTGCTGGGTGCCCGAGTGCCGATGGAAGGGATGATATTCCC
TTTCCTGGCACAGTTCTATGAAGGCAACATCCTGGGCGGCGATGGCGGGT
GGCAGGAGGCCAAGGCCCAGGACTTGGTGGTGCGTGCCCGTGTATGTGCC
ACGGGCGAGTATCCTCCCTGCGGCACGCCCCTTCTCAATGCGGCCTCCAT
CTCTAAGTTCCTGCCCGAGATTCGCGATCCCAATAATCCTATGAGCGAGG
AGATTATTGCTCGGAACGTTCGCATTGGCGCGAGTTTGATGCTGCAGCCT
GTGAATGAGGCCACGACGCTGGAGAGGATGCGGATGGTCAAAGACAGCAC
GGGGGATGAGGGCGGCGGTAGAAGATGAGGGGGAGTGGAAAGAGAAATGG
AGGAAATGAAAGACAGGATAAAATGAAAGAAAATGTAAATTAAGCCGTGA
TGCGTGGGGAATCAAAGCCATGACAATTTGCGAGGCGTAGCTGTGGTTGA
AGAGAAGCAAGCAGCACATTCAGGGCAAGTAGCAGCCGCAGCAGCACGCA
CAAATTACGAT
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protein sequence of jgi.p|Nanoce1779_2|573495

>mRNA_1791-protein ID=mRNA_1791-protein|Name=jgi.p|Nanoce1779_2|573495|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MRNDLLPCLTLLLLSIIITTVLAYSPPQGPFRAHLLSLSPVSYTRASFLT
DSYLGATAAALVGLAPASNAASPPSSDTRIGLEGGPTRREKSRPALLEAL
VYLPKGVNYWGELLAGPDEEEQEDDGSMSSSAGTGTEALFLTASFQGKLV
LGARVPMEGMIFPFLAQFYEGNILGGDGGWQEAKAQDLVVRARVCATGEY
PPCGTPLLNAASISKFLPEIRDPNNPMSEEIIARNVRIGASLMLQPVNEA
TTLERMRMVKDSTGDEGGGRR*
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mRNA from alignment at scaffold_1:1528041..1529051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1791 ID=mRNA_1791|Name=jgi.p|Nanoce1779_2|573495|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp|location=Sequence derived from alignment at scaffold_1:1528041..1529051- (Nannochloropsis oceanica)
ACAGGGGTTATCATGCGCAACGACCTCCTTCCCTGCTTGACGCTTCTGCT
TCTCTCGATTATTATCACCACCGTCTTGGCCTACTCTCCACCGCAAGGTC
CATTCCGCGCTCATCTTTTATCTCTTTCGCCGGTCTCATATACTCGCGCT
TCGTTTTTGACCGATTCATATCTGGGTGCGACCGCTGCTGCCTTGGTAGG
GCTTGCTCCCGCCTCGAACGCAGCTTCCCCTCCCTCCTCCGATACGAGGA
TAGGTCTAGAAGGCGGGCCCACGAGGCGTGAGAAGAGCCGGCCTGCCTTG
CTGGAGGCTTTAGTATACCTACCCAAAGGCGTGAACTATTGGGGCGAGCT
CTTGGCTGGCCCCGACGAGGAGGAGCAGGAGGATGATGGCTCTATGTCTA
GCAGCGCTGGCACTGGCACGGAAGCCCTCTTTCTGACGGCCTCCTTCCAA
GGCAAACTCGTGCTGGGTGCCCGAGTGCCGATGGAAGGGATGATATTCCC
TTTCCTGGCACAGTTCTATGAAGGCAACATCCTGGGCGGCGATGGCGGGT
GGCAGGAGGCCAAGGCCCAGGACTTGGTGGTGCGTGCCCGTGTATGTGCC
ACGGGCGAGTATCCTCCCTGCGGCACGCCCCTTCTCAATGCGGCCTCCAT
CTCTAAGTTCCTGCCCGAGATTCGCGATCCCAATAATCCTATGAGCGAGG
AGATTATTGCTCGGAACGTTCGCATTGGCGCGAGTTTGATGCTGCAGCCT
GTGAATGAGGCCACGACGCTGGAGAGGATGCGGATGGTCAAAGACAGCAC
GGGGGATGAGGGCGGCGGTAGAAGATGAGGGGGAGTGGAAAGAGAAATGG
AGGAAATGAAAGACAGGATAAAATGAAAGAAAATGTAAATTAAGCCGTGA
TGCGTGGGGAATCAAAGCCATGACAATTTGCGAGGCGTAGCTGTGGTTGA
AGAGAAGCAAGCAGCACATTCAGGGCAAGTAGCAGCCGCAGCAGCACGCA
CAAATTACGAT
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Coding sequence (CDS) from alignment at scaffold_1:1528041..1529051-

>mRNA_1791 ID=mRNA_1791|Name=jgi.p|Nanoce1779_2|573495|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_1:1528041..1529051- (Nannochloropsis oceanica)
ATGCGCAACGACCTCCTTCCCTGCTTGACGCTTCTGCTTCTCTCGATTAT
TATCACCACCGTCTTGGCCTACTCTCCACCGCAAGGTCCATTCCGCGCTC
ATCTTTTATCTCTTTCGCCGGTCTCATATACTCGCGCTTCGTTTTTGACC
GATTCATATCTGGGTGCGACCGCTGCTGCCTTGGTAGGGCTTGCTCCCGC
CTCGAACGCAGCTTCCCCTCCCTCCTCCGATACGAGGATAGGTCTAGAAG
GCGGGCCCACGAGGCGTGAGAAGAGCCGGCCTGCCTTGCTGGAGGCTTTA
GTATACCTACCCAAAGGCGTGAACTATTGGGGCGAGCTCTTGGCTGGCCC
CGACGAGGAGGAGCAGGAGGATGATGGCTCTATGTCTAGCAGCGCTGGCA
CTGGCACGGAAGCCCTCTTTCTGACGGCCTCCTTCCAAGGCAAACTCGTG
CTGGGTGCCCGAGTGCCGATGGAAGGGATGATATTCCCTTTCCTGGCACA
GTTCTATGAAGGCAACATCCTGGGCGGCGATGGCGGGTGGCAGGAGGCCA
AGGCCCAGGACTTGGTGGTGCGTGCCCGTGTATGTGCCACGGGCGAGTAT
CCTCCCTGCGGCACGCCCCTTCTCAATGCGGCCTCCATCTCTAAGTTCCT
GCCCGAGATTCGCGATCCCAATAATCCTATGAGCGAGGAGATTATTGCTC
GGAACGTTCGCATTGGCGCGAGTTTGATGCTGCAGCCTGTGAATGAGGCC
ACGACGCTGGAGAGGATGCGGATGGTCAAAGACAGCACGGGGGATGAGGG
CGGCGGTAGAAGATGA
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Synonyms
Publications