jgi.p|Nanoce1779_2|565770, mRNA_4342 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565770
Unique NamemRNA_4342
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length381
Alignment locationscaffold_10:339863..340243 -

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Properties
Property NameValue
TranscriptId565856
TrackFilteredModels2
ProteinId565770
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:339863..340243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565770gene_4342Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4342CDS_4342Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565770mRNA_4342-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4342 ID=mRNA_4342|Name=jgi.p|Nanoce1779_2|565770|organism=Nannochloropsis oceanica|type=mRNA|length=381bp
ATGTGGGTTGCCGCTTGTCCGGACGATAGGGCATTTTTGACGGTGTTTTC
TGAAGTGGCGCTGCAGCAGCAGAAGTATTGGAGGGATAAGGAGAAGGAAA
AGGACATACAAGTGATTTTAGCAGCATTGGTCGGGGAGTTTGATTGTCCG
TTTCCAGGGCCGGTGATAGTGGAGAATGCGGGGATTGGAGGCGGAGAAGG
AGGGGAAGGAGGGGGAGGAAAAGGTGGAAGGAGGGGAGGGAGAGGTGGTG
CACGTGCTGCCGCTGCTTCGCCCGAAGCTGTGGCTATAGAGGTTCATGAA
ACGACGGCAGCGGCTGCGGCAGGGAAAGTTGGCAGTACGGCGGGTGGAGG
GGGGGTGGGGAGGGGGAGGAGGAGAAAATAG
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protein sequence of jgi.p|Nanoce1779_2|565770

>mRNA_4342-protein ID=mRNA_4342-protein|Name=jgi.p|Nanoce1779_2|565770|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MWVAACPDDRAFLTVFSEVALQQQKYWRDKEKEKDIQVILAALVGEFDCP
FPGPVIVENAGIGGGEGGEGGGGKGGRRGGRGGARAAAASPEAVAIEVHE
TTAAAAAGKVGSTAGGGGVGRGRRRK*
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mRNA from alignment at scaffold_10:339863..340243-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4342 ID=mRNA_4342|Name=jgi.p|Nanoce1779_2|565770|organism=Nannochloropsis oceanica|type=mRNA|length=381bp|location=Sequence derived from alignment at scaffold_10:339863..340243- (Nannochloropsis oceanica)
ATGTGGGTTGCCGCTTGTCCGGACGATAGGGCATTTTTGACGGTGTTTTC
TGAAGTGGCGCTGCAGCAGCAGAAGTATTGGAGGGATAAGGAGAAGGAAA
AGGACATACAAGTGATTTTAGCAGCATTGGTCGGGGAGTTTGATTGTCCG
TTTCCAGGGCCGGTGATAGTGGAGAATGCGGGGATTGGAGGCGGAGAAGG
AGGGGAAGGAGGGGGAGGAAAAGGTGGAAGGAGGGGAGGGAGAGGTGGTG
CACGTGCTGCCGCTGCTTCGCCCGAAGCTGTGGCTATAGAGGTTCATGAA
ACGACGGCAGCGGCTGCGGCAGGGAAAGTTGGCAGTACGGCGGGTGGAGG
GGGGGTGGGGAGGGGGAGGAGGAGAAAATAG
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Coding sequence (CDS) from alignment at scaffold_10:339863..340243-

>mRNA_4342 ID=mRNA_4342|Name=jgi.p|Nanoce1779_2|565770|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_10:339863..340243- (Nannochloropsis oceanica)
ATGTGGGTTGCCGCTTGTCCGGACGATAGGGCATTTTTGACGGTGTTTTC
TGAAGTGGCGCTGCAGCAGCAGAAGTATTGGAGGGATAAGGAGAAGGAAA
AGGACATACAAGTGATTTTAGCAGCATTGGTCGGGGAGTTTGATTGTCCG
TTTCCAGGGCCGGTGATAGTGGAGAATGCGGGGATTGGAGGCGGAGAAGG
AGGGGAAGGAGGGGGAGGAAAAGGTGGAAGGAGGGGAGGGAGAGGTGGTG
CACGTGCTGCCGCTGCTTCGCCCGAAGCTGTGGCTATAGAGGTTCATGAA
ACGACGGCAGCGGCTGCGGCAGGGAAAGTTGGCAGTACGGCGGGTGGAGG
GGGGGTGGGGAGGGGGAGGAGGAGAAAATAG
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Synonyms
Publications