jgi.p|Nanoce1779_2|38727, mRNA_5835 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|38727
Unique NamemRNA_5835
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1171
Alignment locationscaffold_11:694677..695847 -

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Properties
Property NameValue
TranscriptId38813
TrackFilteredModels2
ProteinId38727
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:694677..695847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|38727gene_5835Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|38727mRNA_5835-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5835CDS_5835Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5835 ID=mRNA_5835|Name=jgi.p|Nanoce1779_2|38727|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp
CACTCCCTCCCTTTATAGGTGACCGAGCGAGATCACCGTGCGCTTCTTCG
ACTGGCCTACCCGCAGCATCATCGAACACAGCCGCAGCAAATCACAACCG
ATTTCGATGTTCTCAAACGCAATTTTAAGTTTGCCTGGCGCGAGGGCGAG
GACGACGATCGGAGCACGTGGGGCGCTCGGATGGCCAAACGCTACTTCGA
CAAGTTACACAAGGAATACGTGCTCGCGGATTTGAGCCGATGGAAGGAGG
GCAAAGTTGGCCTGCGATGGCGGGTGGAGCGAGAGGTCGTGGACGGTACA
GGTCAATACACGTGTGGGTCCCTCGGGGTAGGATGCCGCGCTCGAGAGGG
GCTGGCAAGCTACGAATTAAACTTTCGCTACCAAGAAGGGGGAGAGGTGA
GGAATGAATTAGTAAAGATAAGAGTGTGTGAGCGGTGTAAGGATTTGTTG
GATCAGGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAGGGGAGAAG
CAGCAGTGATGCTCGCAGTGAAAGGAGGATGGACAATAGGAGGAAAGAGG
AGGAGGAGGACGCACAGTGGAGGAGGAGGAAAGGAGTTAGTGGTGGCAGT
AGGCAGAAGAGAGATAAAGAGGGTAGGAGTCGGGGTGAAGATGCTAGTGC
TGGCAACCGTAAGATACAGAAGCAGGGCGAAGGAAAGCCCACAGGTGCAT
CTCCTCCTCCTCCTCCTCCTCCTCCTCATCCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTACAACCACCAAAACAGCGATCGACAGCGTAACGTCAAA
AGCAGCGGCAGTAGACGCAGAAACAGTTGCGGCGGCAGCAGCAGCAGCAG
CAGCAGAAGGGAGGAGAAAGGAGAAAGCGGCGGCGGCTATGCAAGAGATG
GACGACTTGATCCGTGATATCCTCGATGGCAAAACAGGCACATAGACGGC
GAAACTAAGCGGAAAATGAAGGCAATTGTAAACTTGTACAAGTCAAGGAA
ACGGTAAAGAAGGAATTGACAGTTATAGATGGCAAAAGTGAACGTGTAGG
CTCGAGACCCTCGCGATAATCGGGCTGGGGCTGTAGCTGTTATGAAGGAG
TGCGTATATGTCTCAATATCCTTCTTCCCATTGGCAATCGGGCCAAGCAA
GCGTGAGACTGAAAGTGCGAG
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protein sequence of jgi.p|Nanoce1779_2|38727

>mRNA_5835-protein ID=mRNA_5835-protein|Name=jgi.p|Nanoce1779_2|38727|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVVDGTGQYTCGSLGV
GCRAREGLASYELNFRYQEGGEVRNELVKIRVCERCKDLLDQARGGGGGG
GGGKGRSSSDARSERRMDNRRKEEEEDAQWRRRKGVSGGSRQKRDKEGRS
RGEDASAGNRKIQKQGEGKPTGASPPPPPPPPHPAAAAAAAAAATTTKTA
IDSVTSKAAAVDAETVAAAAAAAAAEGRRKEKAAAAMQEMDDLIRDILDG
KTGT*
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mRNA from alignment at scaffold_11:694677..695847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5835 ID=mRNA_5835|Name=jgi.p|Nanoce1779_2|38727|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp|location=Sequence derived from alignment at scaffold_11:694677..695847- (Nannochloropsis oceanica)
CACTCCCTCCCTTTATAGGTGACCGAGCGAGATCACCGTGCGCTTCTTCG
ACTGGCCTACCCGCAGCATCATCGAACACAGCCGCAGCAAATCACAACCG
ATTTCGATGTTCTCAAACGCAATTTTAAGTTTGCCTGGCGCGAGGGCGAG
GACGACGATCGGAGCACGTGGGGCGCTCGGATGGCCAAACGCTACTTCGA
CAAGTTACACAAGGAATACGTGCTCGCGGATTTGAGCCGATGGAAGGAGG
GCAAAGTTGGCCTGCGATGGCGGGTGGAGCGAGAGGTCGTGGACGGTACA
GGTCAATACACGTGTGGGTCCCTCGGGGTAGGATGCCGCGCTCGAGAGGG
GCTGGCAAGCTACGAATTAAACTTTCGCTACCAAGAAGGGGGAGAGGTGA
GGAATGAATTAGTAAAGATAAGAGTGTGTGAGCGGTGTAAGGATTTGTTG
GATCAGGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAGGGGAGAAG
CAGCAGTGATGCTCGCAGTGAAAGGAGGATGGACAATAGGAGGAAAGAGG
AGGAGGAGGACGCACAGTGGAGGAGGAGGAAAGGAGTTAGTGGTGGCAGT
AGGCAGAAGAGAGATAAAGAGGGTAGGAGTCGGGGTGAAGATGCTAGTGC
TGGCAACCGTAAGATACAGAAGCAGGGCGAAGGAAAGCCCACAGGTGCAT
CTCCTCCTCCTCCTCCTCCTCCTCCTCATCCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTACAACCACCAAAACAGCGATCGACAGCGTAACGTCAAA
AGCAGCGGCAGTAGACGCAGAAACAGTTGCGGCGGCAGCAGCAGCAGCAG
CAGCAGAAGGGAGGAGAAAGGAGAAAGCGGCGGCGGCTATGCAAGAGATG
GACGACTTGATCCGTGATATCCTCGATGGCAAAACAGGCACATAGACGGC
GAAACTAAGCGGAAAATGAAGGCAATTGTAAACTTGTACAAGTCAAGGAA
ACGGTAAAGAAGGAATTGACAGTTATAGATGGCAAAAGTGAACGTGTAGG
CTCGAGACCCTCGCGATAATCGGGCTGGGGCTGTAGCTGTTATGAAGGAG
TGCGTATATGTCTCAATATCCTTCTTCCCATTGGCAATCGGGCCAAGCAA
GCGTGAGACTGAAAGTGCGAG
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Coding sequence (CDS) from alignment at scaffold_11:694677..695847-

>mRNA_5835 ID=mRNA_5835|Name=jgi.p|Nanoce1779_2|38727|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_11:694677..695847- (Nannochloropsis oceanica)
ATGGCCAAACGCTACTTCGACAAGTTACACAAGGAATACGTGCTCGCGGA
TTTGAGCCGATGGAAGGAGGGCAAAGTTGGCCTGCGATGGCGGGTGGAGC
GAGAGGTCGTGGACGGTACAGGTCAATACACGTGTGGGTCCCTCGGGGTA
GGATGCCGCGCTCGAGAGGGGCTGGCAAGCTACGAATTAAACTTTCGCTA
CCAAGAAGGGGGAGAGGTGAGGAATGAATTAGTAAAGATAAGAGTGTGTG
AGCGGTGTAAGGATTTGTTGGATCAGGCAAGAGGAGGAGGAGGAGGAGGA
GGAGGAGGGAAGGGGAGAAGCAGCAGTGATGCTCGCAGTGAAAGGAGGAT
GGACAATAGGAGGAAAGAGGAGGAGGAGGACGCACAGTGGAGGAGGAGGA
AAGGAGTTAGTGGTGGCAGTAGGCAGAAGAGAGATAAAGAGGGTAGGAGT
CGGGGTGAAGATGCTAGTGCTGGCAACCGTAAGATACAGAAGCAGGGCGA
AGGAAAGCCCACAGGTGCATCTCCTCCTCCTCCTCCTCCTCCTCCTCATC
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACAACCACCAAAACAGCG
ATCGACAGCGTAACGTCAAAAGCAGCGGCAGTAGACGCAGAAACAGTTGC
GGCGGCAGCAGCAGCAGCAGCAGCAGAAGGGAGGAGAAAGGAGAAAGCGG
CGGCGGCTATGCAAGAGATGGACGACTTGATCCGTGATATCCTCGATGGC
AAAACAGGCACATAG
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Synonyms
Publications