jgi.p|Nanoce1779_2|589987, mRNA_5686 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589987
Unique Name	mRNA_5686
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2115
Alignment location	scaffold_11:322116..324338 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590073
Track	FilteredModels2
ProteinId	589987

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:322116..324338 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589987	gene_5686	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589987	mRNA_5686-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5686	CDS_5686	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:322116..324338+
coding sequence from alignment at scaffold_11:322116..324338+

mRNA sequence

>mRNA_5686 ID=mRNA_5686|Name=jgi.p|Nanoce1779_2|589987|organism=Nannochloropsis oceanica|type=mRNA|length=2115bp
CAGGTGCCGCGCGAGGCTGTATACGATCAACAAGCAAAAATGATGGAGGC
CTGGATACACGATGACTATTATCTCGCTGCTGGGGACAACAATAGCTGCG
ATGATGTGCTGGAAAGTGGAGGGGGTAGTGCTACCGGTGGGCCCTCCTCC
TCCTCGACAGCCACTGCAAGTGCTATGAGGGTATGCTTGTGTGTTGTGGT
GTACATTCCTTTGCTACGAATGCACTCGCCAGAGAGCGCAAAATAGCATA
TCTTCCAGACTTGTGCAGCTCAGCTAGCCCACTTGCACTATCCTCATTGC
CCTCATTTGTTACTTGACCCCTTCCGCTGTCTTGTCCCCGCTTTACCCTG
TCTCATCTTGCCTGTCTTCTTCGGACAATATCCTTCTTACAAAGGAACGT
GAAAACGGCGTTCAATTTTCTCCACCTTTCCTCTCCCGCCATCTTTCCCT
AGGCCAGCGCGGACATGCGCGCCCACTCTACCATCAAGGCCTTCGTGCAC
CAGCTTACCGTCCCCCTCTCCTCGCCCTCCCCTCCGCCGCCGTCGCTACC
GTCAACGTCGGTACCAGAAGAGCCCGTGTCCAACACCACCACCAGCAGCA
GCAGCAGCAACAGTAGCAACAGTGACAGTATTCACAGTTGTCGCTGCAGC
TACAAGGACGAGGGCGAGGACGAGGATGAGTTTGAGGACGTGGACCTGGA
GACAGGGGACGCCTGCAGCACCACCAACGCTACGTTAGGGGAGAATGACG
ACGAACAGGAGGAAAACAATGGGCACGCTATCTGCCTGATTTGCTACGAT
GAGTTTCCGATGGATAAGAAACTCCCATGGACGATGCCTCCTCCTTCTCC
TTCTTCTTCTTCCAGTCACAGCAGTACTATGAGAGCGGGTTCTTTTCCCC
CTCTTGCACCCCCTCCGCAGCCTCCGCGCCCTGCCGTTTCTTCCTCCTCT
GCATCCTTCCTAAGTCCCTCTTCTCACTATTGCCCTCATTCCTATTGTGG
AAGGTGCATCAAAACGTACTTAGAGACACGCATCCACGAGGGTCGGGCGG
AGCATCCTTGTCCCATGCGGGGTGATGCAGGTTGCAATTTTGTTTTTGGC
GACGATCATCTCCACAAGATCGTCGACCCTGCCATCCTAGCGAAGCACCA
ACATCGCGCCACCCTTCTCGCCGAGCCCTCTCTCCGTGAGTGCCCTTCCT
GCCACACCCTCGTCAAGGGCGGTTCAAAGCACCGTCCCTCCCTCACCTGT
CCCTCCTGCGGATTGAAATTTTGTTTTCTGCACGCCACGGCCCATGCAAT
GGACGAAGTGAGACGGTGGGAAGGGCGGAGGGGGGAAGGGAGACATAGTT
GCCGTCAGTACAAGCGGCAGATGCGAGCAGTGGAGCGGGCAAGTGCCTCG
ACGGTAAAGAGGATTAGTAAGCCTTGTCCCCAGTGCAAGGCGCCGATAGA
GAAGGATGGTGGGTGCAATCATATTTCGTGCATTTCGTGCCGCTATGAGT
GGTGCTGGTTGTGTGATCAGCGCTATACGCCTTTCCACTACTCTCCTACC
AACATTTTCGGGTGTCCCGGTTCGCAATTCGTGGACTTTGGAGGAGGGGC
TCACGGGTGCTGTTGTGGTTTCATTGCACCGCTTTGTCGAGTCTTCCGTG
TGCTGCTGGCATTGATTCTGTTGCCGGGGCCGATGCTGTTGGGGATGGTG
GTGGCGCTCTTAGGATCTGCGTTGTGGCTGCCGGTAGGGGTGATTTGGGC
GTCTCTTTCGAAGCTCTGCGCCGGGTCACCGGCGGCAGTTTCGTGCTTGG
GAGGGCACTGGCAGATGTGTGATCTGATCTTTCCGCTGGTAAGTGGGAGC
CGGACTTTCAGGCAGGGAAATGGCGCGATGGGTCTCGTATATGTGTTCGT
CTTTTTGGGCTCGGCGCCGATCGTGTTGTCCGCGTCGTTGTTGCTACAGG
TGCTGTGGATGCCCTTCGTCCTGTTTGTGTTTGTGGTCCGGGCGAGCCGA
CGACGGCGATTGCAAATATCATTTATGCTTGCGCCTATGCTGTTGGCAAT
GCAATTCTTGGACTTGGATGGGGAGTAGAAGGAGGGTGGAAAAGGAGGGA
GGGAAGGAGGAAAGG

protein sequence of jgi.p|Nanoce1779_2|589987

>mRNA_5686-protein ID=mRNA_5686-protein|Name=jgi.p|Nanoce1779_2|589987|organism=Nannochloropsis oceanica|type=polypeptide|length=538bp
MRAHSTIKAFVHQLTVPLSSPSPPPPSLPSTSVPEEPVSNTTTSSSSSNS
SNSDSIHSCRCSYKDEGEDEDEFEDVDLETGDACSTTNATLGENDDEQEE
NNGHAICLICYDEFPMDKKLPWTMPPPSPSSSSSHSSTMRAGSFPPLAPP
PQPPRPAVSSSSASFLSPSSHYCPHSYCGRCIKTYLETRIHEGRAEHPCP
MRGDAGCNFVFGDDHLHKIVDPAILAKHQHRATLLAEPSLRECPSCHTLV
KGGSKHRPSLTCPSCGLKFCFLHATAHAMDEVRRWEGRRGEGRHSCRQYK
RQMRAVERASASTVKRISKPCPQCKAPIEKDGGCNHISCISCRYEWCWLC
DQRYTPFHYSPTNIFGCPGSQFVDFGGGAHGCCCGFIAPLCRVFRVLLAL
ILLPGPMLLGMVVALLGSALWLPVGVIWASLSKLCAGSPAAVSCLGGHWQ
MCDLIFPLVSGSRTFRQGNGAMGLVYVFVFLGSAPIVLSASLLLQVLWMP
FVLFVFVVRASRRRRLQISFMLAPMLLAMQFLDLDGE*

mRNA from alignment at scaffold_11:322116..324338+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5686 ID=mRNA_5686|Name=jgi.p|Nanoce1779_2|589987|organism=Nannochloropsis oceanica|type=mRNA|length=2223bp|location=Sequence derived from alignment at scaffold_11:322116..324338+ (Nannochloropsis oceanica)
CAGGTGCCGCGCGAGGCTGTATACGATCAACAAGCAAAAATGATGGAGGC
CTGGATACACGATGACTATTATCTCGCTGCTGGGGACAACAATAGCTGCG
ATGATGTGCTGGAAAGTGGAGGGGGTAGTGCTACCGGTGGGCCCTCCTCC
TCCTCGACAGCCACTGCAAGTGCTATGAGGGTATGCTTGTGTGTTGTGGT
GTACATTCCTTTGCTACGAATGCACTCGCCAGAGAGCGCAAAATAGCATA
TCTTCCAGACTTGTGCAGCTCAGCTAGCCCACTTGCACTATCCTCATTGC
CCTCATTTGTTACTTGACCCCTTCCGCTGTCTTGTCCCCGCTTTACCCTG
TCTCATCTTGCCTGTCTTCTTCGGACAATATCCTTCTTACAAAGGAACGT
GAAAACGGCGTTCAATTTTCTCCACCTTTCCTCTCCCGCCATCTTTCCCT
AGGCCAGCGCGGACATGCGCGCCCACTCTACCATCAAGGCCTTCGTGCAC
CAGCTTACCGTCCCCCTCTCCTCGCCCTCCCCTCCGCCGCCGTCGCTACC
GTCAACGTCGGTACCAGAAGAGCCCGTGTCCAACACCACCACCAGCAGCA
GCAGCAGCAACAGTAGCAACAGTGACAGTATTCACAGTTGTCGCTGCAGC
TACAAGGACGAGGGCGAGGACGAGGATGAGTTTGAGGACGTGGACCTGGA
GACAGGGGACGCCTGCAGCACCACCAACGCTACGTTAGGGGAGAATGACG
ACGAACAGGAGGAAAACAATGGGCACGCTATCTGCCTGATTTGCTACGAT
GAGTTTCCGATGGATAAGAAACTCCCATGGACGATGCCTCCTCCTTCTCC
TTCTTCTTCTTCCAGTCACAGCAGTACTATGAGAGCGGGTTCTTTTCCCC
CTCTTGCACCCCCTCCGCAGCCTCCGCGCCCTGCCGTTTCTTCCTCCTCT
GCATCCTTCCTAAGTCCCTCTTCTCACTATTGCCCTCATTCCTATTGTGG
AAGGTGCATCAAAACGTACTTAGAGACACGCATCCACGAGGGTCGGGCGG
AGCATCCTTGTCCCATGCGGGGTGATGCAGGTTGCAATTTTGTTTTTGGG
TGAGTGCTCCTGTTCAGGCAAGCCATCCTATACACTCCCTTTCTCCCTCT
CTCCCTCTCTTCCTCCCTCAAACGCTCTGTACCTCCTGCTTTCCCCTCCC
CTAACAGCGACGATCATCTCCACAAGATCGTCGACCCTGCCATCCTAGCG
AAGCACCAACATCGCGCCACCCTTCTCGCCGAGCCCTCTCTCCGTGAGTG
CCCTTCCTGCCACACCCTCGTCAAGGGCGGTTCAAAGCACCGTCCCTCCC
TCACCTGTCCCTCCTGCGGATTGAAATTTTGTTTTCTGCACGCCACGGCC
CATGCAATGGACGAAGTGAGACGGTGGGAAGGGCGGAGGGGGGAAGGGAG
ACATAGTTGCCGTCAGTACAAGCGGCAGATGCGAGCAGTGGAGCGGGCAA
GTGCCTCGACGGTAAAGAGGATTAGTAAGCCTTGTCCCCAGTGCAAGGCG
CCGATAGAGAAGGATGGTGGGTGCAATCATATTTCGTGCATTTCGTGCCG
CTATGAGTGGTGCTGGTTGTGTGATCAGCGCTATACGCCTTTCCACTACT
CTCCTACCAACATTTTCGGGTGTCCCGGTTCGCAATTCGTGGACTTTGGA
GGAGGGGCTCACGGGTGCTGTTGTGGTTTCATTGCACCGCTTTGTCGAGT
CTTCCGTGTGCTGCTGGCATTGATTCTGTTGCCGGGGCCGATGCTGTTGG
GGATGGTGGTGGCGCTCTTAGGATCTGCGTTGTGGCTGCCGGTAGGGGTG
ATTTGGGCGTCTCTTTCGAAGCTCTGCGCCGGGTCACCGGCGGCAGTTTC
GTGCTTGGGAGGGCACTGGCAGATGTGTGATCTGATCTTTCCGCTGGTAA
GTGGGAGCCGGACTTTCAGGCAGGGAAATGGCGCGATGGGTCTCGTATAT
GTGTTCGTCTTTTTGGGCTCGGCGCCGATCGTGTTGTCCGCGTCGTTGTT
GCTACAGGTGCTGTGGATGCCCTTCGTCCTGTTTGTGTTTGTGGTCCGGG
CGAGCCGACGACGGCGATTGCAAATATCATTTATGCTTGCGCCTATGCTG
TTGGCAATGCAATTCTTGGACTTGGATGGGGAGTAGAAGGAGGGTGGAAA
AGGAGGGAGGGAAGGAGGAAAGG

Coding sequence (CDS) from alignment at scaffold_11:322116..324338+

>mRNA_5686 ID=mRNA_5686|Name=jgi.p|Nanoce1779_2|589987|organism=Nannochloropsis oceanica|type=CDS|length=3228bp|location=Sequence derived from alignment at scaffold_11:322116..324338+ (Nannochloropsis oceanica)
ATGCGCGCCCACTCTACCATCAAGGCCTTCGTGCACCAGCTTACCGTCCC
CCTCTCCTCGCCCTCCCCTCCGCCGCCGTCGCTACCGTCAACGTCGGTAC
CAGAAGAGCCCGTGTCCAACACCACCACCAGCAGCAGCAGCAGCAACAGT
AGCAACAGTGACAGTATTCACAGTTGTCGCTGCAGCTACAAGGACGAGGG
CGAGGACGAGGATGAGTTTGAGGACGTGGACCTGGAGACAGGGGACGCCT
GCAGCACCACCAACGCTACGTTAGGGGAGAATGACGACGAACAGGAGGAA
AACAATGGGCACGCTATCTGCCTGATTTGCTACGATGAGTTTCCGATGGA
TAAGAAACTCCCATGGACGATGCCTCCTCCTTCTCCTTCTTCTTCTTCCA
GTCACAGCAGTACTATGAGAGCGGGTTCTTTTCCCCCTCTTGCACCCCCT
CCGCAGCCTCCGCGCCCTGCCGTTTCTTCCTCCTCTGCATCCTTCCTAAG
TCCCTCTTCTCACTATTGCCCTCATTCCTATTGTGGAAGGTGCATCAAAA
CGTACTTAGAGACACGCATCCACGAGGGTCGGGCGGAGCATCCTTGTCCC
ATGCGGGGTGATGCAGGTTGCAATTTTGTTTTTGGCGACGATCATCTCCA
CAAGATCGTCGACCCTGCCATCCTAGCGAAGCACCAACATCGCGCCACCC
TTCTCGCCGAGCCCTCTCTCCGTGAGTGCCCTTCCTGCCACACCCTCGTC
AAGGGCGGTTCAAAGCACCGTCCCTCCCTCACCTGTCCCTCCTGCGGATT
GAAATTTTGTTTTCTGCACGCCACGGCCCATGCAATGGACGAAGTGAGAC
GGTGGGAAGGGCGGAGGGGGGAAGGGAGACATAGTTGCCGTCAGTACAAG
CGGCAGATGCGAGCAGTGGAGCGGGCAAGTGCCTCGACGGTAAAGAGGAT
TAGTAAGCCTTGTCCCCAGTGCAAGGCGCCGATAGAGAAGGATGGTGGGT
GCAATCATATTTCGTGCATTTCGTGCCGCTATGAGTGGTGCTGGTTGTGT
GATCAGCGCTATACGCCTTTCCACTACTCTCCTACCAACATTTTCGGGTG
TCCCGGTTCGCAATTCGTGGACTTTGGAGGAGGGGCTCACGGGTGCTGTT
GTGGTTTCATTGCACCGCTTTGTCGAGTCTTCCGTGTGCTGCTGGCATTG
ATTCTGTTGCCGGGGCCGATGCTGTTGGGGATGGTGGTGGCGCTCTTAGG
ATCTGCGTTGTGGCTGCCGGTAGGGGTGATTTGGGCGTCTCTTTCGAAGC
TCTGCGCCGGGTCACCGGCGGCAGTTTCGTGCTTGGGAGGGCACTGGCAG
ATGTGTGATCTGATCTTTCCGCTGGTAAGTGGGAGCCGGACTTTCAGGCA
GGGAAATGGCGCGATGGGTCTCGTATATGTGTTCGTCTTTTTGGGCTCGG
CGCCGATCGTGTTGTCCGCGTCGTTGTTGCTACAGGTGCTGTGGATGCCC
TTCGTCCTGTTTGTGTTTGTGGTCCGGGCGAGCCGACGACGGCGATTGCA
AATATCATTTATGCTTGCGCCTATGCTGTTGGCAATGCAATTCTTGGACT
TGGATGGGGAGTAGATGCGCGCCCACTCTACCATCAAGGCCTTCGTGCAC
CAGCTTACCGTCCCCCTCTCCTCGCCCTCCCCTCCGCCGCCGTCGCTACC
GTCAACGTCGGTACCAGAAGAGCCCGTGTCCAACACCACCACCAGCAGCA
GCAGCAGCAACAGTAGCAACAGTGACAGTATTCACAGTTGTCGCTGCAGC
TACAAGGACGAGGGCGAGGACGAGGATGAGTTTGAGGACGTGGACCTGGA
GACAGGGGACGCCTGCAGCACCACCAACGCTACGTTAGGGGAGAATGACG
ACGAACAGGAGGAAAACAATGGGCACGCTATCTGCCTGATTTGCTACGAT
GAGTTTCCGATGGATAAGAAACTCCCATGGACGATGCCTCCTCCTTCTCC
TTCTTCTTCTTCCAGTCACAGCAGTACTATGAGAGCGGGTTCTTTTCCCC
CTCTTGCACCCCCTCCGCAGCCTCCGCGCCCTGCCGTTTCTTCCTCCTCT
GCATCCTTCCTAAGTCCCTCTTCTCACTATTGCCCTCATTCCTATTGTGG
AAGGTGCATCAAAACGTACTTAGAGACACGCATCCACGAGGGTCGGGCGG
AGCATCCTTGTCCCATGCGGGGTGATGCAGGTTGCAATTTTGTTTTTGGC
GACGATCATCTCCACAAGATCGTCGACCCTGCCATCCTAGCGAAGCACCA
ACATCGCGCCACCCTTCTCGCCGAGCCCTCTCTCCGTGAGTGCCCTTCCT
GCCACACCCTCGTCAAGGGCGGTTCAAAGCACCGTCCCTCCCTCACCTGT
CCCTCCTGCGGATTGAAATTTTGTTTTCTGCACGCCACGGCCCATGCAAT
GGACGAAGTGAGACGGTGGGAAGGGCGGAGGGGGGAAGGGAGACATAGTT
GCCGTCAGTACAAGCGGCAGATGCGAGCAGTGGAGCGGGCAAGTGCCTCG
ACGGTAAAGAGGATTAGTAAGCCTTGTCCCCAGTGCAAGGCGCCGATAGA
GAAGGATGGTGGGTGCAATCATATTTCGTGCATTTCGTGCCGCTATGAGT
GGTGCTGGTTGTGTGATCAGCGCTATACGCCTTTCCACTACTCTCCTACC
AACATTTTCGGGTGTCCCGGTTCGCAATTCGTGGACTTTGGAGGAGGGGC
TCACGGGTGCTGTTGTGGTTTCATTGCACCGCTTTGTCGAGTCTTCCGTG
TGCTGCTGGCATTGATTCTGTTGCCGGGGCCGATGCTGTTGGGGATGGTG
GTGGCGCTCTTAGGATCTGCGTTGTGGCTGCCGGTAGGGGTGATTTGGGC
GTCTCTTTCGAAGCTCTGCGCCGGGTCACCGGCGGCAGTTTCGTGCTTGG
GAGGGCACTGGCAGATGTGTGATCTGATCTTTCCGCTGGTAAGTGGGAGC
CGGACTTTCAGGCAGGGAAATGGCGCGATGGGTCTCGTATATGTGTTCGT
CTTTTTGGGCTCGGCGCCGATCGTGTTGTCCGCGTCGTTGTTGCTACAGG
TGCTGTGGATGCCCTTCGTCCTGTTTGTGTTTGTGGTCCGGGCGAGCCGA
CGACGGCGATTGCAAATATCATTTATGCTTGCGCCTATGCTGTTGGCAAT
GCAATTCTTGGACTTGGATGGGGAGTAG

Synonyms

Publications