jgi.p|Nanoce1779_2|590477, mRNA_5832 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590477
Unique NamemRNA_5832
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1232
Alignment locationscaffold_11:688551..690334 +

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Properties
Property NameValue
TranscriptId590563
TrackFilteredModels2
ProteinId590477
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:688551..690334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590477gene_5832Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590477mRNA_5832-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5832CDS_5832Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5832 ID=mRNA_5832|Name=jgi.p|Nanoce1779_2|590477|organism=Nannochloropsis oceanica|type=mRNA|length=1232bp
CGAAAACGTGAACGGTTGGTGGGAGTCTTCCGGTGGCAATGGTACATGAA
GTAAGGGCCTTGAGCAGCGCACTATATTGGATGTATGCGATGTAGGAGTG
TGTGACAAGGGGATCGAAGGAGTTTTGGTAGTGCTAACCACCTTAAACGG
TGTTAGCCACTCGCCCCTCACTCCCCCTCGCCTTCTCACCACTCACGCGG
CTCCTCTCCAGCTTTTTCTTCCCTCCTTTCCACTCCCACGCTGTATACCT
TGCTTGGGGGCGAAGTAATGGACATTCGTGTCTATGGATAATTCCCTCAG
GCATATTTATGCAGCATGCTGGGCTGGTGTCGTGGTAGATTTGTGCGGCT
CATGAGATTAACCCCTCCAGACCACCCCCATCCATCATTACCCCTTTGAC
CCACGCCATTCTCCCTCCATTTTATATAGGTCTAGCTTCCTTTTGGAGGG
TTACTAGCCAGTCGGACAGAGCATCATGTTCATCACCAAGAAGAACCGCC
TGGCCGTCTATCACAACCTCTTCAAGGAGGGCGTGCTTGTGGCCAAGAAG
GATTTCTACTCCGTCTGGACGTACAAGTCCCCCGACGGCGAAAACGACCT
CAACTTGCCCAACCTCGAGGTGATCAACCTGCTCAAGTCTCTTAAGTCAT
CGGGCTACGTCAAGGAGACCTTCAACTGGCAATACTACTACTACTACCTG
ACCGTGGAGGGGATTGACTACCTCCGTCAGTACCTCAATCTCCCCCAAGA
CGTCGTCCCTCAGACGCACAGTAAGAAAGAGGGCCGCCCTGCCCGTCCAG
CTGGCTTTGCCGAGCGAGGTGACCGCCCTGAAGGGGAGAGGGAGCGACGG
CCGTTTGATAAGGAGAAGAGGCTGGGACCCGATGGCTCATTTGCGCCGTC
TTTCGGTGGGGGTGGATTCGGACGAGGCGGCGGTGGCAATCGAGAGGGAG
GGTACCGTGGTTAGATTCGTTTCCTCTTTGTGAGAGGACCGGCGAGGAGT
GAGGGAGATACTGGGGGAGGGATGGAGAGAAGACGGCGATGTAGCACAAA
ACTCAAATCGGCCCGTCTTGGAGGAGGGAAGAAGGATGAGGGGCTCGTGT
AAACGCACTTCAGTTACTGAGCAGATAGAATGGTAACGCGTATGTGCGCT
TGCCTCTCTCCTTTCCTATTCCCTTTGTTCAAGCGGCCGCGTGGTTCCTA
CGACAAGGAAATGAAGGAACAACATTTAACTA
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protein sequence of jgi.p|Nanoce1779_2|590477

>mRNA_5832-protein ID=mRNA_5832-protein|Name=jgi.p|Nanoce1779_2|590477|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVI
NLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSK
KEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGGFGR
GGGGNREGGYRG*
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mRNA from alignment at scaffold_11:688551..690334+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5832 ID=mRNA_5832|Name=jgi.p|Nanoce1779_2|590477|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp|location=Sequence derived from alignment at scaffold_11:688551..690334+ (Nannochloropsis oceanica)
CGAAAACGTGAACGGTTGGTGGGAGTCTTCCGGTGGCAATGGTACATGAA
GTAAGGGCCTTGAGCAGCGCACTATATTGGATGTATGCGATGTAGGAGTG
TGTGACAAGGGGATCGAAGGAGTTTTGGTAGTGCTAACCACCTTAAACGG
TGTTAGCCACTCGCCCCTCACTCCCCCTCGCCTTCTCACCACTCACGCGG
CTCCTCTCCAGCTTTTTCTTCCCTCCTTTCCACTCCCACGCTGTATACCT
TGCTTGGGGGCGAAGTAATGGACATTCGTGTCTATGGATAATTCCCTCAG
GCATATTTATGCAGCATGCTGGGCTGGTGTCGTGGTAGATTTGTGCGGCT
CATGAGATTAACCCCTCCAGACCACCCCCATCCATCATTACCCCTTTGAC
CCACGCCATTCTCCCTCCATTTTATATAGGTCTAGCTTCCTTTTGGAGGG
TTACTAGCCAGTCGGACAGAGCATCATGGTACGTCATAGTAGAATTGGGA
CTATGGGCGGCGGATGGGAAAGGATGAGAGGAGTTGGAGAAGAGTAGTTG
GAGGAGGGGTGCACGAAAGGCAGCCTCACACACACACCAATACACCATAC
TTGCAGTTCATCACCAAGAAGAACCGCCTGGCCGTCTATCACAACCTCTT
CAAGGGTACGTTTATTGTTTGATGATGAGAAATTTTGTGAAGAGAGCCTG
CATTCTTCCCCCTCTCGTCTCCCTACGGCTTGCCAACCCCCCACCGCACA
CATGATGTCACCCTCGCTGATCCTTCCTCCTGCCACCGCTATCACAATAG
AGGGCGTGCTTGTGGCCAAGAAGGATTTCTACTCCGTCTGGACGTACAAG
TCCCCCGACGGCGAAAACGACCTCAACTTGCCCAACCTCGAGGTGATCAA
CCTGCTCAAGTCTCTTAAGTCATCGGGCTACGTCAAGGAGACCTTCAACT
GGTGCGCGCCATGGGGGAAATAAGGAAGGGGGAGGAAAGAGAGGCATAAG
GGAAAATCTGTCTGGTGGAGGAGGTTGCTGGGTGATTGGAGGGGGAGAGG
CCTGGCCTGTGTGGATGCTGATCACATTCATGCTGGTTGGGCGGCTCCTC
CCGTCATCTTTCTCCCTTCCATGCATCGATTTTCTTCCCTAGGTCTCTCA
TTATTCCTTCTGCCTTTTTCCTCACGCCGCGCCTCTTTTTTTTTCCCCTC
CAACCCCTTACTTCCTTCCTTATCACTTAGGCAATACTACTACTACTACC
TGACCGTGGAGGGGATTGACTACCTCCGTCAGTACCTCAATCTCCCCCAA
GACGTCGTCCCTCAGACGCACAGTAAGAAAGAGGGCCGCCCTGCCCGTCC
AGCTGGCTTTGCCGAGCGAGGTGACCGCCCTGAAGGGGAGAGGGAGCGAC
GGCCGTTTGATAAGGAGAAGAGGCTGGGACCCGATGGCTCATTTGCGCCG
TCTTTCGGTGGGGGTGGATTCGGACGAGGCGGCGGTGGCAATCGAGAGGG
AGGGTACCGTGGTTAGATTCGTTTCCTCTTTGTGAGAGGACCGGCGAGGA
GTGAGGGAGATACTGGGGGAGGGATGGAGAGAAGACGGCGATGTAGCACA
AAACTCAAATCGGCCCGTCTTGGAGGAGGGAAGAAGGATGAGGGGCTCGT
GTAAACGCACTTCAGTTACTGAGCAGATAGAATGGTAACGCGTATGTGCG
CTTGCCTCTCTCCTTTCCTATTCCCTTTGTTCAAGCGGCCGCGTGGTTCC
TACGACAAGGAAATGAAGGAACAACATTTAACTA
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Coding sequence (CDS) from alignment at scaffold_11:688551..690334+

>mRNA_5832 ID=mRNA_5832|Name=jgi.p|Nanoce1779_2|590477|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_11:688551..690334+ (Nannochloropsis oceanica)
ATGTTCATCACCAAGAAGAACCGCCTGGCCGTCTATCACAACCTCTTCAA
GGAGGGCGTGCTTGTGGCCAAGAAGGATTTCTACTCCGTCTGGACGTACA
AGTCCCCCGACGGCGAAAACGACCTCAACTTGCCCAACCTCGAGGTGATC
AACCTGCTCAAGTCTCTTAAGTCATCGGGCTACGTCAAGGAGACCTTCAA
CTGGCAATACTACTACTACTACCTGACCGTGGAGGGGATTGACTACCTCC
GTCAGTACCTCAATCTCCCCCAAGACGTCGTCCCTCAGACGCACAGTAAG
AAAGAGGGCCGCCCTGCCCGTCCAGCTGGCTTTGCCGAGCGAGGTGACCG
CCCTGAAGGGGAGAGGGAGCGACGGCCGTTTGATAAGGAGAAGAGGCTGG
GACCCGATGGCTCATTTGCGCCGTCTTTCGGTGGGGGTGGATTCGGACGA
GGCGGCGGTGGCAATCGAGAGGGAGGGTACCGTGGTTAGATGTTCATCAC
CAAGAAGAACCGCCTGGCCGTCTATCACAACCTCTTCAAGGAGGGCGTGC
TTGTGGCCAAGAAGGATTTCTACTCCGTCTGGACGTACAAGTCCCCCGAC
GGCGAAAACGACCTCAACTTGCCCAACCTCGAGGTGATCAACCTGCTCAA
GTCTCTTAAGTCATCGGGCTACGTCAAGGAGACCTTCAACTGGCAATACT
ACTACTACTACCTGACCGTGGAGGGGATTGACTACCTCCGTCAGTACCTC
AATCTCCCCCAAGACGTCGTCCCTCAGACGCACAGTAAGAAAGAGGGCCG
CCCTGCCCGTCCAGCTGGCTTTGCCGAGCGAGGTGACCGCCCTGAAGGGG
AGAGGGAGCGACGGCCGTTTGATAAGGAGAAGAGGCTGGGACCCGATGGC
TCATTTGCGCCGTCTTTCGGTGGGGGTGGATTCGGACGAGGCGGCGGTGG
CAATCGAGAGGGAGGGTACCGTGGTTAGATGTTCATCACCAAGAAGAACC
GCCTGGCCGTCTATCACAACCTCTTCAAGGAGGGCGTGCTTGTGGCCAAG
AAGGATTTCTACTCCGTCTGGACGTACAAGTCCCCCGACGGCGAAAACGA
CCTCAACTTGCCCAACCTCGAGGTGATCAACCTGCTCAAGTCTCTTAAGT
CATCGGGCTACGTCAAGGAGACCTTCAACTGGCAATACTACTACTACTAC
CTGACCGTGGAGGGGATTGACTACCTCCGTCAGTACCTCAATCTCCCCCA
AGACGTCGTCCCTCAGACGCACAGTAAGAAAGAGGGCCGCCCTGCCCGTC
CAGCTGGCTTTGCCGAGCGAGGTGACCGCCCTGAAGGGGAGAGGGAGCGA
CGGCCGTTTGATAAGGAGAAGAGGCTGGGACCCGATGGCTCATTTGCGCC
GTCTTTCGGTGGGGGTGGATTCGGACGAGGCGGCGGTGGCAATCGAGAGG
GAGGGTACCGTGGTTAGATGTTCATCACCAAGAAGAACCGCCTGGCCGTC
TATCACAACCTCTTCAAGGAGGGCGTGCTTGTGGCCAAGAAGGATTTCTA
CTCCGTCTGGACGTACAAGTCCCCCGACGGCGAAAACGACCTCAACTTGC
CCAACCTCGAGGTGATCAACCTGCTCAAGTCTCTTAAGTCATCGGGCTAC
GTCAAGGAGACCTTCAACTGGCAATACTACTACTACTACCTGACCGTGGA
GGGGATTGACTACCTCCGTCAGTACCTCAATCTCCCCCAAGACGTCGTCC
CTCAGACGCACAGTAAGAAAGAGGGCCGCCCTGCCCGTCCAGCTGGCTTT
GCCGAGCGAGGTGACCGCCCTGAAGGGGAGAGGGAGCGACGGCCGTTTGA
TAAGGAGAAGAGGCTGGGACCCGATGGCTCATTTGCGCCGTCTTTCGGTG
GGGGTGGATTCGGACGAGGCGGCGGTGGCAATCGAGAGGGAGGGTACCGT
GGTTAG
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Synonyms
Publications