jgi.p|Nanoce1779_2|590486, mRNA_5834 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590486
Unique Name	mRNA_5834
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1897
Alignment location	scaffold_11:691614..693510 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590572
Track	FilteredModels2
ProteinId	590486

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:691614..693510 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590486	gene_5834	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590486	mRNA_5834-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5834	CDS_5834	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:691614..693510-
coding sequence from alignment at scaffold_11:691614..693510-

mRNA sequence

>mRNA_5834 ID=mRNA_5834|Name=jgi.p|Nanoce1779_2|590486|organism=Nannochloropsis oceanica|type=mRNA|length=1897bp
CTCCTTGCAGGAATAACACAGGAAACTGCGCTTCGGAAGGATTACTACCA
CAACCATTCGCGGCCGCAAAGCCACCACCACCACCACCACCAGCAGCAGC
AGCAGCAGCAGCAGCGGACGAAGGAGCAGGGTATGCAGAATAGAGGGGAC
GGCCCTTCCCACTGCCGGTGCTGGTGCTATTGCTGCTGCTGCTGTTGATG
CCTTGGTTGGGGCTGGTCATGTGATGCTGAAAGAGAGAACCCAGCGAGCG
GGCGACGGTCTCGGGCAAGGCATCCTCGACACGAGCCCAGAAGACTTGGT
TGCTTCGGTAAGGGAGGGAGGGATCGTGAGCCACGAGACACAATTGACCC
ATCCAACAGAGCAGTGGGAGGCAGAAAAGGACAGAGTGGCGGGGGAGTGG
GGGAGGAATAGAGACTAGGAAAAAGACGTACCGTTGCATAGCCCGTTCAA
TCGACAAGGTGGAATGGGACACGACTCTCCTTAACTCCTTCACGCATGCT
TCCAATCTCAATGTCTCCGTCGGGGTGTCTTGCCCGAACAAGGACGTGTG
CTGCCTCAATTCATGCTCTCGCAGCTTCGCACTCTTCCCTGCCCTCTCCT
TCCTCGCCTCGTGAAATTCCAACACATGCTGCAAGCGCAATGCAGCTGCC
ACCACTTCCTCCTTCAGATCCCCATGCAGCCGGCTTCGAATTTGCTCTAT
TTCACGCTCCACCTTCTTAGTTTGGGAGGTGACTTTCTGCCGGCCTTGTT
CGACTAGCACCCGCAAAAGGGCAATGAAGGCCTCGACCAGGCGAAGATTC
GTTCCGATCCGTTGCCGCTTCCGTTCCTTGTTTTCCAGTTGCTCGGCCTT
GTGCTGTCGGGTGGCGACGAGGTCCGCATATTGCGGGGCACGACAAACAT
CCAGCAGCGTGGAGACCAAGGCAAGCGAGGAAGGAAAGGAGGGAGAGGTA
GGGAGGGAGGGGATGGAGGATAGCCCACTCCCCCCCTCCTCCGAGGAAGC
AGCAAATGAACGCTGTACAATCGTATCAAACTCCTCATCCATCCCCCTCA
ATTCCCCCTTCGTCCGCTCCACCTCTGCACTCTGCTCAAGCAATTTGAAT
TGCCACGTCTTGATCCATGCATCCTTCTCTTCCAACGCTCCCGTATTTCG
CTCACTGTACTCACGGCCGTATTCAATCAACCGACCCCCCGCCTCCTCCA
GCGCGAGCAGCTGGTCAACCAAACTATTGCACGTCCACATCTGCTGCTCG
AATACTTCGTCTGCTTTCTTCGCGCCTCCTCCTCCCTCCCCTCCTCCTCC
TTCCTGCTGCTGCTGCTGCTGCTCTTCCTTCTCCCGCTGTTGCTCCCGTT
GTCGCTGTCGAGAGGCACGCAGAAGAGCACCATGCCGGTAGGGAAGGCGA
ACATGAAGGGAGGTTTGGGCTTTCTTCAGCTCGTGCGCGATTTGCTTGGC
GCTGTCTTGGAGGCGATCCTTGTGGGTGGTGCGAAGGGCGTCAAGAAGGT
CCTGCAATGGAGGAGGAGGGGAGGAGGAAAATGTGGAGGGGAGGATGCCA
CGGAAGCCGTGGAGGAGTTGTTCGATAGAGGGATTGGTGGCAGTGGTGGT
GGTGGTGCCACGCGTGCACTGGCTAGGGCGGTCAAGCAGATCGATTAGGT
CTTCCTCCTTCCCTTCCTCCTCCTCCATCGACACTGCTTCTCCCCGCGCA
CGTTTCGCGGACGCCACGGCTTCTAATAGCGTCTTTAACAAAGCCTCTTC
CGTGATCTCCTCCTCTTCTTCTCCCCCCTCTTCTCCTGCCTCCTCATCCT
CGTCCTGGCCCTGACCTTCATCCACTCCTCTCCGTGGTTCCTCCTGCATC
GCCGTCATCATTCTCAGCATTCCCCCTATCCCATCCTCTTCCCCCCT

protein sequence of jgi.p|Nanoce1779_2|590486

>mRNA_5834-protein ID=mRNA_5834-protein|Name=jgi.p|Nanoce1779_2|590486|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MKASTRRRFVPIRCRFRSLFSSCSALCCRVATRSAYCGARQTSSSVETKA
SEEGKEGEVGREGMEDSPLPPSSEEAANERCTIVSNSSSIPLNSPFVRST
SALCSSNLNCHVLIHASFSSNAPVFRSLYSRPYSINRPPASSSASSWSTK
LLHVHICCSNTSSAFFAPPPPSPPPPSCCCCCCSSFSRCCSRCRCREARR
RAPCR*

mRNA from alignment at scaffold_11:691614..693510-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5834 ID=mRNA_5834|Name=jgi.p|Nanoce1779_2|590486|organism=Nannochloropsis oceanica|type=mRNA|length=1897bp|location=Sequence derived from alignment at scaffold_11:691614..693510- (Nannochloropsis oceanica)
CTCCTTGCAGGAATAACACAGGAAACTGCGCTTCGGAAGGATTACTACCA
CAACCATTCGCGGCCGCAAAGCCACCACCACCACCACCACCAGCAGCAGC
AGCAGCAGCAGCAGCGGACGAAGGAGCAGGGTATGCAGAATAGAGGGGAC
GGCCCTTCCCACTGCCGGTGCTGGTGCTATTGCTGCTGCTGCTGTTGATG
CCTTGGTTGGGGCTGGTCATGTGATGCTGAAAGAGAGAACCCAGCGAGCG
GGCGACGGTCTCGGGCAAGGCATCCTCGACACGAGCCCAGAAGACTTGGT
TGCTTCGGTAAGGGAGGGAGGGATCGTGAGCCACGAGACACAATTGACCC
ATCCAACAGAGCAGTGGGAGGCAGAAAAGGACAGAGTGGCGGGGGAGTGG
GGGAGGAATAGAGACTAGGAAAAAGACGTACCGTTGCATAGCCCGTTCAA
TCGACAAGGTGGAATGGGACACGACTCTCCTTAACTCCTTCACGCATGCT
TCCAATCTCAATGTCTCCGTCGGGGTGTCTTGCCCGAACAAGGACGTGTG
CTGCCTCAATTCATGCTCTCGCAGCTTCGCACTCTTCCCTGCCCTCTCCT
TCCTCGCCTCGTGAAATTCCAACACATGCTGCAAGCGCAATGCAGCTGCC
ACCACTTCCTCCTTCAGATCCCCATGCAGCCGGCTTCGAATTTGCTCTAT
TTCACGCTCCACCTTCTTAGTTTGGGAGGTGACTTTCTGCCGGCCTTGTT
CGACTAGCACCCGCAAAAGGGCAATGAAGGCCTCGACCAGGCGAAGATTC
GTTCCGATCCGTTGCCGCTTCCGTTCCTTGTTTTCCAGTTGCTCGGCCTT
GTGCTGTCGGGTGGCGACGAGGTCCGCATATTGCGGGGCACGACAAACAT
CCAGCAGCGTGGAGACCAAGGCAAGCGAGGAAGGAAAGGAGGGAGAGGTA
GGGAGGGAGGGGATGGAGGATAGCCCACTCCCCCCCTCCTCCGAGGAAGC
AGCAAATGAACGCTGTACAATCGTATCAAACTCCTCATCCATCCCCCTCA
ATTCCCCCTTCGTCCGCTCCACCTCTGCACTCTGCTCAAGCAATTTGAAT
TGCCACGTCTTGATCCATGCATCCTTCTCTTCCAACGCTCCCGTATTTCG
CTCACTGTACTCACGGCCGTATTCAATCAACCGACCCCCCGCCTCCTCCA
GCGCGAGCAGCTGGTCAACCAAACTATTGCACGTCCACATCTGCTGCTCG
AATACTTCGTCTGCTTTCTTCGCGCCTCCTCCTCCCTCCCCTCCTCCTCC
TTCCTGCTGCTGCTGCTGCTGCTCTTCCTTCTCCCGCTGTTGCTCCCGTT
GTCGCTGTCGAGAGGCACGCAGAAGAGCACCATGCCGGTAGGGAAGGCGA
ACATGAAGGGAGGTTTGGGCTTTCTTCAGCTCGTGCGCGATTTGCTTGGC
GCTGTCTTGGAGGCGATCCTTGTGGGTGGTGCGAAGGGCGTCAAGAAGGT
CCTGCAATGGAGGAGGAGGGGAGGAGGAAAATGTGGAGGGGAGGATGCCA
CGGAAGCCGTGGAGGAGTTGTTCGATAGAGGGATTGGTGGCAGTGGTGGT
GGTGGTGCCACGCGTGCACTGGCTAGGGCGGTCAAGCAGATCGATTAGGT
CTTCCTCCTTCCCTTCCTCCTCCTCCATCGACACTGCTTCTCCCCGCGCA
CGTTTCGCGGACGCCACGGCTTCTAATAGCGTCTTTAACAAAGCCTCTTC
CGTGATCTCCTCCTCTTCTTCTCCCCCCTCTTCTCCTGCCTCCTCATCCT
CGTCCTGGCCCTGACCTTCATCCACTCCTCTCCGTGGTTCCTCCTGCATC
GCCGTCATCATTCTCAGCATTCCCCCTATCCCATCCTCTTCCCCCCT

Coding sequence (CDS) from alignment at scaffold_11:691614..693510-

>mRNA_5834 ID=mRNA_5834|Name=jgi.p|Nanoce1779_2|590486|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_11:691614..693510- (Nannochloropsis oceanica)
ATGAAGGCCTCGACCAGGCGAAGATTCGTTCCGATCCGTTGCCGCTTCCG
TTCCTTGTTTTCCAGTTGCTCGGCCTTGTGCTGTCGGGTGGCGACGAGGT
CCGCATATTGCGGGGCACGACAAACATCCAGCAGCGTGGAGACCAAGGCA
AGCGAGGAAGGAAAGGAGGGAGAGGTAGGGAGGGAGGGGATGGAGGATAG
CCCACTCCCCCCCTCCTCCGAGGAAGCAGCAAATGAACGCTGTACAATCG
TATCAAACTCCTCATCCATCCCCCTCAATTCCCCCTTCGTCCGCTCCACC
TCTGCACTCTGCTCAAGCAATTTGAATTGCCACGTCTTGATCCATGCATC
CTTCTCTTCCAACGCTCCCGTATTTCGCTCACTGTACTCACGGCCGTATT
CAATCAACCGACCCCCCGCCTCCTCCAGCGCGAGCAGCTGGTCAACCAAA
CTATTGCACGTCCACATCTGCTGCTCGAATACTTCGTCTGCTTTCTTCGC
GCCTCCTCCTCCCTCCCCTCCTCCTCCTTCCTGCTGCTGCTGCTGCTGCT
CTTCCTTCTCCCGCTGTTGCTCCCGTTGTCGCTGTCGAGAGGCACGCAGA
AGAGCACCATGCCGGTAG

Synonyms

Publications