jgi.p|Nanoce1779_2|671073, mRNA_5836 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671073
Unique Name	mRNA_5836
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2398
Alignment location	scaffold_11:696040..698473 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	671159
Track	FilteredModels2
ProteinId	671073

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:696040..698473 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671073	gene_5836	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671073	mRNA_5836-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5836	CDS_5836	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:696040..698473+
coding sequence from alignment at scaffold_11:696040..698473+

mRNA sequence

>mRNA_5836 ID=mRNA_5836|Name=jgi.p|Nanoce1779_2|671073|organism=Nannochloropsis oceanica|type=mRNA|length=2398bp
AATTCTATGCTCCCGTCTTCTGATGTATGGCCACCCTACGACTCCCACAC
CACAAACATCACACATCATCTGCAGGCTCGTCAATGAAGCAGCCTGCTCC
ACATCCTCCGATTTTCCCGCCCAAGTGGACGCAGACGGACGTACTTGACA
GAGCCACAGGGTCTACATATCGTGTGAATTTCCAAGGCGAACTCCCCTCC
TCCTCCTCATCCTCCTCCTCCTCCTCATCTTCCTCCTCCTCCCACCCCGC
CTTACACCAAGCCGATGATCGAGTGCAGGACTCAAAAGAAGAGACCGTCC
TCGTCTTTTTGCACGGGGCGGGACACACAGGCGTGAGCTGGACACTACCA
TGCATCGAGCTCGGCAAGCTGATCGGAATGACACACGATGCCTCGCCCCC
GACTTTGTTGATGCTGGCCCCAGACTTGCCTTTCCATGGCCAAACCAAGG
TGGTGCCAAATGATGGTGATATGTCAATGAAAAGACTAGTGAATGAATTG
TTGAGCTGTTTGAAAGCGTGCTTGCAGGTCAGAGAAGGTGTGGGGGAGGG
GGAGAGGGGGACGAGGAGGAGGAGTCTGACTCTGGTCGGCCACAGCGTGG
GAGGGGCATGCGCGATTCGCCTGGGACAAGAACCGGGTTTGGCAGTCTTA
GGAACATTAAAGGGCATTTGCGTCGTGGACATGGTGGAGGGAGCAGCAAT
GGCTTCGCTCTCACACATGCAGGATAGGTTGAAAGAGGTTCCGCAGAGCT
TCGAAAGTGTGGAGGCCGCGATTGAGTGGTCCCTAGGACCGGGGAATGTG
CTGAAGAATGAGGAGTCGGCGGCCTTGTCGGTACCGGCGCAGTTGAGGAA
GGTGGTAGGACGGAGGAGGAGAGAAGGGGTTAGTGAGAGTGGTGGTGGTT
CTGGGCATGCCGCGAGCAGTGAGGCCTGTAACGGTGGAGGAGGAGAAGGA
GGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGAAGAAGGAGAAGGAGGAGA
AGGAGTGGGTATGACGGAAAACGAAGGCGACGAGACACAACTGGAAGACT
GTCATTATGAATGGATCACCGACCTCCGCCTTACGGAGCCTTTTTGGCAG
GACTGGTTCCAAGGCCTTTCCGCTGCCTTTCTCTCTTCCTCCCTCCACTC
CACCCCAAAACTTCTCGTCCTCGCGAATTACCTTTTGTTGGAATGCGACC
GTGCGATTTGCACCGCTCAGATGCAGGGGTTGTTCGAGATGCAATTCATG
CAAGGAGGTGGGCATGCCCTGATGGAGGACTTCCCCCTTCACTTTGCTCG
TACGCTCTACAGGTTCTTGAGACGGAACCAGATAGTGACGGAGGGGGGGA
TGGTGGAGGGAGGGGGGAAGGAGTGTGCCTCTCCGATGCGTGGGGGACAG
CAGCAACACCAGCAGCAGCAGCTACTACATCGGAGTCGAAGTGAAAGTCC
TTCGCACCATCCGCCGTCGGCCCATTACTTCAAACCGCCCCACCCCCACT
TCCATTCTGATACACACCTGTCCCGCTCTCTCTCCCCTTCTTCCTCCACG
TCCTCTTCTTCATCTTCTTGTCATTCTCCTCCCATCCCGGCTTCTCCTCC
CGTCCCGGCTTCTATGCGCGTGATGCACAGCAATAGTGGCAGCACCAGCA
GTATCAGCAGTAGCAGCGCCAGCAGCTACAGCATTAGTAATGGGACCGGC
CTAGGATGAAAATAGGAAAGGGTTACACAAAAATTCAAGATTTTAAAGCC
ACTGTATAAACAAACACACAAAGCAAGCATAAAAAGACAAAACCGAACAG
AAAGTCTCAAATCTTTTGGAGGGAAATGTAATGAGTGTAACTACACCAGC
AAATCGTTGAGGTCACACCCCTTTTTCGACAAGCCTGACATGAGCTATCG
TTCGTTGTCATGCGCCCCAAAAATCATTCCTTGTCTCTCAGCAGCACACC
TGTATGGATCAATGCCCCCAGCACCCTCCCCGTTTGCTCTTTTGATTTCC
CCGCGAATTGTTCTAGTTGAAACCTTCCCCCTTCTCTTGTGGTTGGCAAA
CCAGCCACAAACACACCCACGTGCCGAGGCACCCACATCTTCTTCCGAAA
CACGCTGGAGAGGTCCTCGGTTCCTCCAAACCCTACATGTACCATAAACT
CCTCCTCTTCCTCCTCCTCGTCCTCATCCACTCCCCTTTTATCCTCCTCT
ACCTCCTTAACGGCCACGACGTCATCCAACCGAAAGAAACTGGCAAGGGG
GTTGCGACACAACCAGACGTCCTCCCCTACAGGCACAGCGAAATCCTTGC
AGTGAAAGTCATCATCACCTTCCTCCTCCTCTTCCCCATCCCCCTTCTCG
TAAGGAGCAGCAGCAGCATCCTTCATTGGCGGCAAACCAGAATTCCAC

protein sequence of jgi.p|Nanoce1779_2|671073

>mRNA_5836-protein ID=mRNA_5836-protein|Name=jgi.p|Nanoce1779_2|671073|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp
MATLRLPHHKHHTSSAGSSMKQPAPHPPIFPPKWTQTDVLDRATGSTYRV
NFQGELPSSSSSSSSSSSSSSSHPALHQADDRVQDSKEETVLVFLHGAGH
TGVSWTLPCIELGKLIGMTHDASPPTLLMLAPDLPFHGQTKVVPNDGDMS
MKRLVNELLSCLKACLQVREGVGEGERGTRRRSLTLVGHSVGGACAIRLG
QEPGLAVLGTLKGICVVDMVEGAAMASLSHMQDRLKEVPQSFESVEAAIE
WSLGPGNVLKNEESAALSVPAQLRKVVGRRRREGVSESGGGSGHAASSEA
CNGGGGEGGEGGGGGEGGEEGEGGEGVGMTENEGDETQLEDCHYEWITDL
RLTEPFWQDWFQGLSAAFLSSSLHSTPKLLVLANYLLLECDRAICTAQMQ
GLFEMQFMQGGGHALMEDFPLHFARTLYRFLRRNQIVTEGGMVEGGGKEC
ASPMRGGQQQHQQQQLLHRSRSESPSHHPPSAHYFKPPHPHFHSDTHLSR
SLSPSSSTSSSSSSCHSPPIPASPPVPASMRVMHSNSGSTSSISSSSASS
YSISNGTGLG*

mRNA from alignment at scaffold_11:696040..698473+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5836 ID=mRNA_5836|Name=jgi.p|Nanoce1779_2|671073|organism=Nannochloropsis oceanica|type=mRNA|length=2434bp|location=Sequence derived from alignment at scaffold_11:696040..698473+ (Nannochloropsis oceanica)
AATTCTATGCTCCCGTCTTCTGATGTATGGCCACCCTACGACTCCCACAC
CACAAACATCACACATCATCTGCAGGCTCGTCAATGAAGCAGCCTGCTCC
ACATCCTCCGATTTTCCCGCCCAAGTGGACGCAGACGGACGTACTTGACA
GAGCCACAGGGTCTACATATCGTGTGAATTTCCAAGGCGAACTCCCCTCC
TCCTCCTCATCCTCCTCCTCCTCCTCATCTTCCTCCTCCTCCCACCCCGC
CTTACACCAAGCCGATGATCGAGTGCAGGACTCAAAAGAAGAGACCGTCC
TCGTCTTTTTGCACGGGGCGGGACACACAGGCGTGAGCTGGACACTACCA
TGCATCGAGCTCGGCAAGCTGATCGGAATGACACACGATGCCTCGCCCCC
GACTTTGTTGATGCTGGCCCCAGACTTGCCTTTCCATGGCCAAACCAAGG
TGGTGCCAAATGATGGTGATATGTCAATGAAAAGACTAGTGAATGAATTG
TTGAGCTGTTTGAAAGCGTGCTTGCAGGTCAGAGAAGGTGTGGGGGAGGG
GGAGAGGGGGACGAGGAGGAGGAGTCTGACTCTGGTCGGCCACAGCGTGG
GAGGGGCATGCGCGATTCGCCTGGGACAAGAACCGGGTTTGGCAGTCTTA
GGAACATTAAAGGGCATTTGCGTCGTGGACATGGTGGAGGGAGCAGCAAT
GGCTTCGCTCTCACACATGCAGGATAGGTTGAAAGAGGTTCCGCAGAGCT
TCGAAAGTGTGGAGGCCGCGATTGAGTGGTCCCTAGGACCGGGGAATGTG
CTGAAGAATGAGGAGTCGGCGGCCTTGTCGGTACCGGCGCAGTTGAGGAA
GGTGGTAGGACGGAGGAGGAGAGAAGGGGTTAGTGAGAGTGGTGGTGGTT
CTGGGCATGCCGCGAGCAGTGAGGCCTGTAACGGTGGAGGAGGAGAAGGA
GGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGAAGAAGGAGAAGGAGGAGA
AGGAGTGGGTATGACGGAAAACGAAGGCGACGAGACACAACTGGAAGACT
GTCATTATGAATGGATCACCGACCTCCGCCTTACGGAGCCTTTTTGGCAG
GACTGGTTCCAAGGCCTTTCCGCTGCCTTTCTCTCTTCCTCCCTCCACTC
CACCCCAAAACTTCTCGTCCTCGCGAATTACCTTTTGTTGGAATGCGACC
GTGCGATTTGCACCGCTCAGATGCAGGGGTTGTTCGAGATGCAATTCATG
CAAGGAGGTGGGCATGCCCTGATGGAGGACTTCCCCCTTCACTTTGCTCG
TACGCTCTACAGGTTCTTGAGACGGAACCAGATAGTGACGGAGGGGGGGA
TGGTGGAGGGAGGGGGGAAGGAGTGTGCCTCTCCGATGCGTGGGGGACAG
CAGCAACACCAGCAGCAGCAGCTACTACATCGGAGTCGAAGTGAAAGTCC
TTCGCACCATCCGCCGTCGGCCCATTACTTCAAACCGCCCCACCCCCACT
TCCATTCTGATACACACCTGTCCCGCTCTCTCTCCCCTTCTTCCTCCACG
TCCTCTTCTTCATCTTCTTGTCATTCTCCTCCCATCCCGGCTTCTCCTCC
CGTCCCGGCTTCTATGCGCGTGATGCACAGCAATAGTGGCAGCACCAGCA
GTATCAGCAGTAGCAGCGCCAGCAGCTACAGCATTAGTAATGGGACCGGC
CTAGGATGAAAATAGGAAAGGGTTACACAAAAATTCAAGATTTTAAAGCC
ACTGTATAAACAAACACACAAAGCAAGCATAAAAAGACAAAACCGAACAG
AAAGTCTCAAATCTTTTGGAGGGAAATGTAATGAGTGTAACTACACCAGC
AAATCGTTGAGGTCACACCCCTTTTTCGACAAGCCTGACATGAGCTATCG
TTCGTTGTCATGCGCCCCAAAAATCATTCCTTGTCTCTCAGCAGCACACC
TGTATGGATCAATGCCCCCAGCACCCTCCCCGTTTGCTCTTTTGATTTCC
CCGCGAATTGTTCTAGTTGAAACCTTCCCCCTTCTCTTGTGGTTGGCAAA
CCAGCCACAAACACACCCACGTGCCGAGGCACCCACATCTTCTTCCGAAA
CACGCTGGAGAGGTCCTCGGTTCCTCCAAACCCTACATGTACCATAAACT
CCTCCTCTTCCTCCTCCTCGTCCTCATCCACTCCCCTTTTATCCTCCTCT
ACCTCCTTAACGGCCACGACGTCATCCAACCGAAAGAAACTGGCAAGGGG
GTTGCGACACAACCAGACGTCCTCCCCTACAGGCACAGCGAAATCCTTGC
AGTGAAAGTCATCATCACCTTCCTCCTCCTCTTCCCCATCCCCCCCCTCG
TCCCCCTCTCCCTCCTCCGCCTCCTCCCCCTTCTCGTAAGGAGCAGCAGC
AGCATCCTTCATTGGCGGCAAACCAGAATTCCAC

Coding sequence (CDS) from alignment at scaffold_11:696040..698473+

>mRNA_5836 ID=mRNA_5836|Name=jgi.p|Nanoce1779_2|671073|organism=Nannochloropsis oceanica|type=CDS|length=1683bp|location=Sequence derived from alignment at scaffold_11:696040..698473+ (Nannochloropsis oceanica)
ATGGCCACCCTACGACTCCCACACCACAAACATCACACATCATCTGCAGG
CTCGTCAATGAAGCAGCCTGCTCCACATCCTCCGATTTTCCCGCCCAAGT
GGACGCAGACGGACGTACTTGACAGAGCCACAGGGTCTACATATCGTGTG
AATTTCCAAGGCGAACTCCCCTCCTCCTCCTCATCCTCCTCCTCCTCCTC
ATCTTCCTCCTCCTCCCACCCCGCCTTACACCAAGCCGATGATCGAGTGC
AGGACTCAAAAGAAGAGACCGTCCTCGTCTTTTTGCACGGGGCGGGACAC
ACAGGCGTGAGCTGGACACTACCATGCATCGAGCTCGGCAAGCTGATCGG
AATGACACACGATGCCTCGCCCCCGACTTTGTTGATGCTGGCCCCAGACT
TGCCTTTCCATGGCCAAACCAAGGTGGTGCCAAATGATGGTGATATGTCA
ATGAAAAGACTAGTGAATGAATTGTTGAGCTGTTTGAAAGCGTGCTTGCA
GGTCAGAGAAGGTGTGGGGGAGGGGGAGAGGGGGACGAGGAGGAGGAGTC
TGACTCTGGTCGGCCACAGCGTGGGAGGGGCATGCGCGATTCGCCTGGGA
CAAGAACCGGGTTTGGCAGTCTTAGGAACATTAAAGGGCATTTGCGTCGT
GGACATGGTGGAGGGAGCAGCAATGGCTTCGCTCTCACACATGCAGGATA
GGTTGAAAGAGGTTCCGCAGAGCTTCGAAAGTGTGGAGGCCGCGATTGAG
TGGTCCCTAGGACCGGGGAATGTGCTGAAGAATGAGGAGTCGGCGGCCTT
GTCGGTACCGGCGCAGTTGAGGAAGGTGGTAGGACGGAGGAGGAGAGAAG
GGGTTAGTGAGAGTGGTGGTGGTTCTGGGCATGCCGCGAGCAGTGAGGCC
TGTAACGGTGGAGGAGGAGAAGGAGGAGAAGGAGGAGGAGGAGGAGAAGG
AGGAGAAGAAGGAGAAGGAGGAGAAGGAGTGGGTATGACGGAAAACGAAG
GCGACGAGACACAACTGGAAGACTGTCATTATGAATGGATCACCGACCTC
CGCCTTACGGAGCCTTTTTGGCAGGACTGGTTCCAAGGCCTTTCCGCTGC
CTTTCTCTCTTCCTCCCTCCACTCCACCCCAAAACTTCTCGTCCTCGCGA
ATTACCTTTTGTTGGAATGCGACCGTGCGATTTGCACCGCTCAGATGCAG
GGGTTGTTCGAGATGCAATTCATGCAAGGAGGTGGGCATGCCCTGATGGA
GGACTTCCCCCTTCACTTTGCTCGTACGCTCTACAGGTTCTTGAGACGGA
ACCAGATAGTGACGGAGGGGGGGATGGTGGAGGGAGGGGGGAAGGAGTGT
GCCTCTCCGATGCGTGGGGGACAGCAGCAACACCAGCAGCAGCAGCTACT
ACATCGGAGTCGAAGTGAAAGTCCTTCGCACCATCCGCCGTCGGCCCATT
ACTTCAAACCGCCCCACCCCCACTTCCATTCTGATACACACCTGTCCCGC
TCTCTCTCCCCTTCTTCCTCCACGTCCTCTTCTTCATCTTCTTGTCATTC
TCCTCCCATCCCGGCTTCTCCTCCCGTCCCGGCTTCTATGCGCGTGATGC
ACAGCAATAGTGGCAGCACCAGCAGTATCAGCAGTAGCAGCGCCAGCAGC
TACAGCATTAGTAATGGGACCGGCCTAGGATGA

Synonyms

Publications