jgi.p|Nanoce1779_2|591918, mRNA_5259 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591918
Unique NamemRNA_5259
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length639
Alignment locationscaffold_13:5059..5697 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592004
TrackFilteredModels2
ProteinId591918
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:5059..5697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591918gene_5259Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591918mRNA_5259-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5259CDS_5259Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5259 ID=mRNA_5259|Name=jgi.p|Nanoce1779_2|591918|organism=Nannochloropsis oceanica|type=mRNA|length=639bp
CAAAAGGGGTCAAGCATGTTTCGTCGACGCTTCGTTCTTCCGATTGCAGG
GCTCCTCAAGTTGATGATGGCCTCTCCGTCCTCGGGTGCGCCTGTCACTT
TTAGTCCCTGCAGTGACAGCGCCACACCCTATATTCTCGAATCATTAAAT
ATTACTCCTTACCCTCCCCGGGCCGGGGAGACAGTGGAGATCGTGGCGGT
GGGAAAATCCAGCATTGCTGTAGTTGACGGCAGCACCATCCATACGAGCT
TCAAGCAAGGTCCCCTGACTACACCGGAGAAGACGTACAACCTTTGTTCG
ATCTCAAGCGTCACATGTCCTTTGGCAGCAGGTAGCTTAATTACAACCGT
CATGCAACATGAGATTGGGCGCTTTGCGGGAGACGGCATTGCGAGTGGGC
GAGTCTGGGTTTTGGACCCCAAGGGGAAGGAACTAGCGTGTGTCAATGTT
GCAGTCGAGACGCGAAACCACTGAGCGAAAAGAATATTTAAAGACCGGCT
AGCAAAAAATATCAGTATAAACGACGGGAAGACACATGCGCTGTCATGTA
AGAGATGTATTCAAGGATGTGGAAAACATAGGCAACGGCGTCTCGGAACT
ATAGATAACCAACGGTCGTGGAAATTTCAACAACAAAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|591918

>mRNA_5259-protein ID=mRNA_5259-protein|Name=jgi.p|Nanoce1779_2|591918|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MFRRRFVLPIAGLLKLMMASPSSGAPVTFSPCSDSATPYILESLNITPYP
PRAGETVEIVAVGKSSIAVVDGSTIHTSFKQGPLTTPEKTYNLCSISSVT
CPLAAGSLITTVMQHEIGRFAGDGIASGRVWVLDPKGKELACVNVAVETR
NH*
back to top

mRNA from alignment at scaffold_13:5059..5697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5259 ID=mRNA_5259|Name=jgi.p|Nanoce1779_2|591918|organism=Nannochloropsis oceanica|type=mRNA|length=639bp|location=Sequence derived from alignment at scaffold_13:5059..5697+ (Nannochloropsis oceanica)
CAAAAGGGGTCAAGCATGTTTCGTCGACGCTTCGTTCTTCCGATTGCAGG
GCTCCTCAAGTTGATGATGGCCTCTCCGTCCTCGGGTGCGCCTGTCACTT
TTAGTCCCTGCAGTGACAGCGCCACACCCTATATTCTCGAATCATTAAAT
ATTACTCCTTACCCTCCCCGGGCCGGGGAGACAGTGGAGATCGTGGCGGT
GGGAAAATCCAGCATTGCTGTAGTTGACGGCAGCACCATCCATACGAGCT
TCAAGCAAGGTCCCCTGACTACACCGGAGAAGACGTACAACCTTTGTTCG
ATCTCAAGCGTCACATGTCCTTTGGCAGCAGGTAGCTTAATTACAACCGT
CATGCAACATGAGATTGGGCGCTTTGCGGGAGACGGCATTGCGAGTGGGC
GAGTCTGGGTTTTGGACCCCAAGGGGAAGGAACTAGCGTGTGTCAATGTT
GCAGTCGAGACGCGAAACCACTGAGCGAAAAGAATATTTAAAGACCGGCT
AGCAAAAAATATCAGTATAAACGACGGGAAGACACATGCGCTGTCATGTA
AGAGATGTATTCAAGGATGTGGAAAACATAGGCAACGGCGTCTCGGAACT
ATAGATAACCAACGGTCGTGGAAATTTCAACAACAAAAA
back to top

Coding sequence (CDS) from alignment at scaffold_13:5059..5697+

>mRNA_5259 ID=mRNA_5259|Name=jgi.p|Nanoce1779_2|591918|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_13:5059..5697+ (Nannochloropsis oceanica)
ATGTTTCGTCGACGCTTCGTTCTTCCGATTGCAGGGCTCCTCAAGTTGAT
GATGGCCTCTCCGTCCTCGGGTGCGCCTGTCACTTTTAGTCCCTGCAGTG
ACAGCGCCACACCCTATATTCTCGAATCATTAAATATTACTCCTTACCCT
CCCCGGGCCGGGGAGACAGTGGAGATCGTGGCGGTGGGAAAATCCAGCAT
TGCTGTAGTTGACGGCAGCACCATCCATACGAGCTTCAAGCAAGGTCCCC
TGACTACACCGGAGAAGACGTACAACCTTTGTTCGATCTCAAGCGTCACA
TGTCCTTTGGCAGCAGGTAGCTTAATTACAACCGTCATGCAACATGAGAT
TGGGCGCTTTGCGGGAGACGGCATTGCGAGTGGGCGAGTCTGGGTTTTGG
ACCCCAAGGGGAAGGAACTAGCGTGTGTCAATGTTGCAGTCGAGACGCGA
AACCACTGA
back to top
Synonyms
Publications