jgi.p|Nanoce1779_2|592003, mRNA_5281 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592003
Unique Name	mRNA_5281
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1241
Alignment location	scaffold_13:65771..67011 +

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Properties


Property Name	Value
TranscriptId	592089
Track	FilteredModels2
ProteinId	592003

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:65771..67011 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592003	gene_5281	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592003	mRNA_5281-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5281	CDS_5281	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:65771..67011+
coding sequence from alignment at scaffold_13:65771..67011+

mRNA sequence

>mRNA_5281 ID=mRNA_5281|Name=jgi.p|Nanoce1779_2|592003|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp
CAGTCACGAAAAAACAGAAAGGGACACTAGTTTCATCGTCACGCTACCGC
GGGGAGAACAAACGCCCCCTCAAACGCATGGCAAGACTCCCACCACATAT
CATCATCGGCTTTGCTGCTTTCTCCTTCCACGTTCAAGCGTTCCTCTTGC
CCTCCATCTTCACCCTCACCACCATCAACCGCAGCCGTGCCTTGCACAGC
CAGCGACAAGGGTTGTCGGGTGATGTAATTAGGCCCTATCAAGGGAGTGC
TGGAAATGGTGGAGATGCTCGGCAGCAGTTTGCATGTGAGTGAGGAGTGA
GTTGGGACGATTATCTATAATGAGTGGCAATGCTAGGTAGCTGCAGGGCT
GGTACTACGAGACAATGCCATGCACAGAACCAGGAATTTGAGAGAAGAGG
TGATATTAAATTGTAGAAGCAATGCGAGGTCCGTGCAAATAAACGGTATG
AGCATCTTACCCGCTCACCCGCTTACCGATCATCTCCCTCCCCTTCCTAC
ACACTATCTCTCGCTCCTCAATAACAGCTTCCCGGCCTGAATGGCTGGCC
GAGTTGATCATGGCGAAAGAAAGTCAAATCCTCCGTTTTCCTTACGAGCT
CCGCCGTCTCGAATGGACCCCCGAAGATGACGAAGCCGTCGACGGGCTGC
TAATGCAAGGGAAAACGGAAGAGGCCCACTCGTATTTCGAGGAGAAGAAG
GCAACAAGCGTGCCTATGTACCGTCAGACCCTCCGCTATCACTGGACGCA
AACCGAAACTGAAATCCACGTAGGTGTCCCCGTCCCCAAGGCCGTGCGGG
GGGCCAACATGCATTTAATTGTGGCAGAAGACGCATTACAGTTGGCTCTG
ACAGACACTCCGTCCTTTGGAGTCATTGCGGGAAAGTTTGCCGGAGAGAT
CGACCCTTCTACCTCAGGATGGCAACTGAAGCAGAAGCCCGATGGCAGCC
ATTCGGTGTCTATGACACTGAAAAAACAGACGCAGCCAGGCACGCATTCT
CTGTGGTACCAACTAATGCAGGGGGAGAAGCTGGCAACCTGTATGCAGTT
TAGGGGCCAGGGAGGGAGGGACGGCGAAGAGAGGTATCATTGGAATCAAG
ATTTGGACTACATGAATGTTTTCATCCCGATCCCAATGGAGGTGAGGGGT
AAAGCGGTCCAGCTCACGATTGATGCTGCAGGCAAGAGTATGGAGCTGAG
TTATCCCGTGGAGGCGGGAGAGGGAGAGGGAGGGAGGGTGA

protein sequence of jgi.p|Nanoce1779_2|592003

>mRNA_5281-protein ID=mRNA_5281-protein|Name=jgi.p|Nanoce1779_2|592003|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MARLPPHIIIGFAAFSFHVQAFLLPSIFTLTTINRSRALHSQRQGLSGDV
IRPYQGSAGNGGDARQQFACE*

mRNA from alignment at scaffold_13:65771..67011+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5281 ID=mRNA_5281|Name=jgi.p|Nanoce1779_2|592003|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at scaffold_13:65771..67011+ (Nannochloropsis oceanica)
CAGTCACGAAAAAACAGAAAGGGACACTAGTTTCATCGTCACGCTACCGC
GGGGAGAACAAACGCCCCCTCAAACGCATGGCAAGACTCCCACCACATAT
CATCATCGGCTTTGCTGCTTTCTCCTTCCACGTTCAAGCGTTCCTCTTGC
CCTCCATCTTCACCCTCACCACCATCAACCGCAGCCGTGCCTTGCACAGC
CAGCGACAAGGGTTGTCGGGTGATGTAATTAGGCCCTATCAAGGGAGTGC
TGGAAATGGTGGAGATGCTCGGCAGCAGTTTGCATGTGAGTGAGGAGTGA
GTTGGGACGATTATCTATAATGAGTGGCAATGCTAGGTAGCTGCAGGGCT
GGTACTACGAGACAATGCCATGCACAGAACCAGGAATTTGAGAGAAGAGG
TGATATTAAATTGTAGAAGCAATGCGAGGTCCGTGCAAATAAACGGTATG
AGCATCTTACCCGCTCACCCGCTTACCGATCATCTCCCTCCCCTTCCTAC
ACACTATCTCTCGCTCCTCAATAACAGCTTCCCGGCCTGAATGGCTGGCC
GAGTTGATCATGGCGAAAGAAAGTCAAATCCTCCGTTTTCCTTACGAGCT
CCGCCGTCTCGAATGGACCCCCGAAGATGACGAAGCCGTCGACGGGCTGC
TAATGCAAGGGAAAACGGAAGAGGCCCACTCGTATTTCGAGGAGAAGAAG
GCAACAAGCGTGCCTATGTACCGTCAGACCCTCCGCTATCACTGGACGCA
AACCGAAACTGAAATCCACGTAGGTGTCCCCGTCCCCAAGGCCGTGCGGG
GGGCCAACATGCATTTAATTGTGGCAGAAGACGCATTACAGTTGGCTCTG
ACAGACACTCCGTCCTTTGGAGTCATTGCGGGAAAGTTTGCCGGAGAGAT
CGACCCTTCTACCTCAGGATGGCAACTGAAGCAGAAGCCCGATGGCAGCC
ATTCGGTGTCTATGACACTGAAAAAACAGACGCAGCCAGGCACGCATTCT
CTGTGGTACCAACTAATGCAGGGGGAGAAGCTGGCAACCTGTATGCAGTT
TAGGGGCCAGGGAGGGAGGGACGGCGAAGAGAGGTATCATTGGAATCAAG
ATTTGGACTACATGAATGTTTTCATCCCGATCCCAATGGAGGTGAGGGGT
AAAGCGGTCCAGCTCACGATTGATGCTGCAGGCAAGAGTATGGAGCTGAG
TTATCCCGTGGAGGCGGGAGAGGGAGAGGGAGGGAGGGTGA

Coding sequence (CDS) from alignment at scaffold_13:65771..67011+

>mRNA_5281 ID=mRNA_5281|Name=jgi.p|Nanoce1779_2|592003|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_13:65771..67011+ (Nannochloropsis oceanica)
ATGGCAAGACTCCCACCACATATCATCATCGGCTTTGCTGCTTTCTCCTT
CCACGTTCAAGCGTTCCTCTTGCCCTCCATCTTCACCCTCACCACCATCA
ACCGCAGCCGTGCCTTGCACAGCCAGCGACAAGGGTTGTCGGGTGATGTA
ATTAGGCCCTATCAAGGGAGTGCTGGAAATGGTGGAGATGCTCGGCAGCA
GTTTGCATGTGAGTGA

Synonyms

Publications