jgi.p|Nanoce1779_2|592392, mRNA_5393 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592392
Unique Name	mRNA_5393
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2016
Alignment location	scaffold_13:330133..332148 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592478
Track	FilteredModels2
ProteinId	592392

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:330133..332148 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592392	gene_5393	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592392	mRNA_5393-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5393	CDS_5393	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:330133..332148+
coding sequence from alignment at scaffold_13:330133..332148+

mRNA sequence

>mRNA_5393 ID=mRNA_5393|Name=jgi.p|Nanoce1779_2|592392|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp
GAGTGACGTTGGAGGGGGCCGAGATGGAGGTAGACGCCACGGGGGCTGAC
GACGATGCCAAGACCGAGACGACTGACGGCGTGGGGGAGGGAGGGGATGC
GCAGGCCGACGCCAGGAATGAGGCGGGAGTTGCGGCGGCGGCTAAACCCG
TGGCGCTCAAGTTCCTGGAAGAGAAAAACCAGATGCCGGTGCCGCCGGAG
GTGCTGGACATAGAGGTGGACCCAGACATCTGGGGCGAGTCACTGGAGAG
CAAGGCAGTGGTACGTAAGACCCGCAAGTATCATGCCGTGGTGCTAGTGG
ACGCTGAGGACAAGGTGTGGCAGGGCCGGAGCATGGGCGTCAAGTTCCAG
ATCTTCAAGGGCGGGGAAGAGGTGGAGGGCTCGAGCACACCCCGTGCGCA
CAAGGACAACATATTTTGGTTCAACGTTTACGAATTCCTTCTACCAGGCC
TTTACACGTTGCGCTACACAGTGGACACTTTTAACAAGGACATCAAGCCA
CTCTGCCTGCGCGTGGAGGTTCGTGCTCGCAGGGCTCCGACCTCGGTGCG
CTCCGTGCTCAATGGCCACCTGAGCTTTCTCAATGTCTCGCGCGGCGGTC
GTTACAGCCTTAGACAATCGGTTGAGCTGGACATACCCGAGGACGCAGAT
GAGGTGGTGGGCCTGCGCATAGCTCTCCTCCAGCTTAAAGAGACATTACC
GGCCGGCGCGCTGCTGGAATGTCCCGAGGATCTAGGCGGCAGCGGGAGCA
GCGGCAGCGTCGGTATGGGGGCCGAGGGGGAATCAGGGGCAGCCCGGGCG
TCCGTGTGCATCTGGACGGACACTCTGCAAGCACAATGGATCAACCATCT
GATGGAGGCAGAGACGGCCCAGGAGGTGATGGAGGGCCTTCTACTTCTTG
AATCCTGCTTGCACCCGGAGTGGCTCAAGCCCTGGTTCCACCCCTTGCGC
CGGGCTTACGCTGCTTCGACCACCCACCTGCTGCGTATGGGTACCACCCC
GGCGGCGGTGGCCTTCCACCTCTTCATCCTGGATAAGGCTCTCTTGTACG
ACAAAGAGAAAAAGGTGTTGCGCAAGACGCGCGGGGGAGCAGCAAGTACA
GGGGGAAACTTTCGTCGTTCGACACAGCGCTCGCGATTGGAGGAGCTGAG
CGACGAAGACGATGAAGAAGTGACGGAGAGCGAGGAGGAGGGGGACTCCG
ATGAGGATGATAATCGCAAGCGTACGCGTTCACGCAAGCAGCACGGCAAG
AGGAGCTCTTGGGCGGCCTCATCATCTTCTTCGTCCCGCGGTGTCAAGCA
CGCCCAGCGATCGTCCTTCCGCAAGCGGGCGGTGGTGTCTTACAAGGAAG
CAGGTGATAATGACATCTACGACGAGGAGTCGGAGGACGAGCCGTCGGTG
GCGGCGAAGGAGGATGCTGCACAAGGCAGTGGAGGGAGCAGGAGCAGGCC
GCGTGGAGGCGGGCCCATCGTGTCGGTAGAGGAATTTGCGAAGGAGTGCC
TCGTGGTGTTACGACAGCTCAAGGCCCACCCAGCGGCCGGGCCGTTCAAG
GAAGACGTGAAGGCAGTGGACGTACCGGGCTACAGCGACATCGTGCCTTA
CCCCATGAGTTTGATAACGTTGGAGACGAAGGCTCGGCGGCAGGCGTACG
ACATGTCGCTGGAGAAATTCGCAGAGGATGTGAGCAAGCTATGGGAGAAC
AGTGCCCTGTACAACGGTGAGGATCACGTGGTCACCCAAATGGCTCTTGA
GCTCAAGGTCCTCTTCGAAACATGGCAGAGGGAGATGAAGCGCCGCATCG
TGACGTGAGGTGGGGGGGGGCATCCTGGGTGGGGATGACCAGTGGTCCAG
ACCATATGACTGGCCGTCCGAGCCTCGAGAAATGAAATAGAGAGAGGGCG
AAAGAAAGTAGGCGTCCCAGATGATGATAAAAGCAAAAGGGAGATGGCAA
ATGTCGTGATCTCATAGTGAACGGAAGAATTGACATGAGCAAAGAAGACC
TCAGACAGCGCGCGAG

protein sequence of jgi.p|Nanoce1779_2|592392

>mRNA_5393-protein ID=mRNA_5393-protein|Name=jgi.p|Nanoce1779_2|592392|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MEVDATGADDDAKTETTDGVGEGGDAQADARNEAGVAAAAKPVALKFLEE
KNQMPVPPEVLDIEVDPDIWGESLESKAVVRKTRKYHAVVLVDAEDKVWQ
GRSMGVKFQIFKGGEEVEGSSTPRAHKDNIFWFNVYEFLLPGLYTLRYTV
DTFNKDIKPLCLRVEVRARRAPTSVRSVLNGHLSFLNVSRGGRYSLRQSV
ELDIPEDADEVVGLRIALLQLKETLPAGALLECPEDLGGSGSSGSVGMGA
EGESGAARASVCIWTDTLQAQWINHLMEAETAQEVMEGLLLLESCLHPEW
LKPWFHPLRRAYAASTTHLLRMGTTPAAVAFHLFILDKALLYDKEKKVLR
KTRGGAASTGGNFRRSTQRSRLEELSDEDDEEVTESEEEGDSDEDDNRKR
TRSRKQHGKRSSWAASSSSSSRGVKHAQRSSFRKRAVVSYKEAGDNDIYD
EESEDEPSVAAKEDAAQGSGGSRSRPRGGGPIVSVEEFAKECLVVLRQLK
AHPAAGPFKEDVKAVDVPGYSDIVPYPMSLITLETKARRQAYDMSLEKFA
EDVSKLWENSALYNGEDHVVTQMALELKVLFETWQREMKRRIVT*

mRNA from alignment at scaffold_13:330133..332148+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5393 ID=mRNA_5393|Name=jgi.p|Nanoce1779_2|592392|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp|location=Sequence derived from alignment at scaffold_13:330133..332148+ (Nannochloropsis oceanica)
GAGTGACGTTGGAGGGGGCCGAGATGGAGGTAGACGCCACGGGGGCTGAC
GACGATGCCAAGACCGAGACGACTGACGGCGTGGGGGAGGGAGGGGATGC
GCAGGCCGACGCCAGGAATGAGGCGGGAGTTGCGGCGGCGGCTAAACCCG
TGGCGCTCAAGTTCCTGGAAGAGAAAAACCAGATGCCGGTGCCGCCGGAG
GTGCTGGACATAGAGGTGGACCCAGACATCTGGGGCGAGTCACTGGAGAG
CAAGGCAGTGGTACGTAAGACCCGCAAGTATCATGCCGTGGTGCTAGTGG
ACGCTGAGGACAAGGTGTGGCAGGGCCGGAGCATGGGCGTCAAGTTCCAG
ATCTTCAAGGGCGGGGAAGAGGTGGAGGGCTCGAGCACACCCCGTGCGCA
CAAGGACAACATATTTTGGTTCAACGTTTACGAATTCCTTCTACCAGGCC
TTTACACGTTGCGCTACACAGTGGACACTTTTAACAAGGACATCAAGCCA
CTCTGCCTGCGCGTGGAGGTTCGTGCTCGCAGGGCTCCGACCTCGGTGCG
CTCCGTGCTCAATGGCCACCTGAGCTTTCTCAATGTCTCGCGCGGCGGTC
GTTACAGCCTTAGACAATCGGTTGAGCTGGACATACCCGAGGACGCAGAT
GAGGTGGTGGGCCTGCGCATAGCTCTCCTCCAGCTTAAAGAGACATTACC
GGCCGGCGCGCTGCTGGAATGTCCCGAGGATCTAGGCGGCAGCGGGAGCA
GCGGCAGCGTCGGTATGGGGGCCGAGGGGGAATCAGGGGCAGCCCGGGCG
TCCGTGTGCATCTGGACGGACACTCTGCAAGCACAATGGATCAACCATCT
GATGGAGGCAGAGACGGCCCAGGAGGTGATGGAGGGCCTTCTACTTCTTG
AATCCTGCTTGCACCCGGAGTGGCTCAAGCCCTGGTTCCACCCCTTGCGC
CGGGCTTACGCTGCTTCGACCACCCACCTGCTGCGTATGGGTACCACCCC
GGCGGCGGTGGCCTTCCACCTCTTCATCCTGGATAAGGCTCTCTTGTACG
ACAAAGAGAAAAAGGTGTTGCGCAAGACGCGCGGGGGAGCAGCAAGTACA
GGGGGAAACTTTCGTCGTTCGACACAGCGCTCGCGATTGGAGGAGCTGAG
CGACGAAGACGATGAAGAAGTGACGGAGAGCGAGGAGGAGGGGGACTCCG
ATGAGGATGATAATCGCAAGCGTACGCGTTCACGCAAGCAGCACGGCAAG
AGGAGCTCTTGGGCGGCCTCATCATCTTCTTCGTCCCGCGGTGTCAAGCA
CGCCCAGCGATCGTCCTTCCGCAAGCGGGCGGTGGTGTCTTACAAGGAAG
CAGGTGATAATGACATCTACGACGAGGAGTCGGAGGACGAGCCGTCGGTG
GCGGCGAAGGAGGATGCTGCACAAGGCAGTGGAGGGAGCAGGAGCAGGCC
GCGTGGAGGCGGGCCCATCGTGTCGGTAGAGGAATTTGCGAAGGAGTGCC
TCGTGGTGTTACGACAGCTCAAGGCCCACCCAGCGGCCGGGCCGTTCAAG
GAAGACGTGAAGGCAGTGGACGTACCGGGCTACAGCGACATCGTGCCTTA
CCCCATGAGTTTGATAACGTTGGAGACGAAGGCTCGGCGGCAGGCGTACG
ACATGTCGCTGGAGAAATTCGCAGAGGATGTGAGCAAGCTATGGGAGAAC
AGTGCCCTGTACAACGGTGAGGATCACGTGGTCACCCAAATGGCTCTTGA
GCTCAAGGTCCTCTTCGAAACATGGCAGAGGGAGATGAAGCGCCGCATCG
TGACGTGAGGTGGGGGGGGGCATCCTGGGTGGGGATGACCAGTGGTCCAG
ACCATATGACTGGCCGTCCGAGCCTCGAGAAATGAAATAGAGAGAGGGCG
AAAGAAAGTAGGCGTCCCAGATGATGATAAAAGCAAAAGGGAGATGGCAA
ATGTCGTGATCTCATAGTGAACGGAAGAATTGACATGAGCAAAGAAGACC
TCAGACAGCGCGCGAG

Coding sequence (CDS) from alignment at scaffold_13:330133..332148+

>mRNA_5393 ID=mRNA_5393|Name=jgi.p|Nanoce1779_2|592392|organism=Nannochloropsis oceanica|type=CDS|length=1785bp|location=Sequence derived from alignment at scaffold_13:330133..332148+ (Nannochloropsis oceanica)
ATGGAGGTAGACGCCACGGGGGCTGACGACGATGCCAAGACCGAGACGAC
TGACGGCGTGGGGGAGGGAGGGGATGCGCAGGCCGACGCCAGGAATGAGG
CGGGAGTTGCGGCGGCGGCTAAACCCGTGGCGCTCAAGTTCCTGGAAGAG
AAAAACCAGATGCCGGTGCCGCCGGAGGTGCTGGACATAGAGGTGGACCC
AGACATCTGGGGCGAGTCACTGGAGAGCAAGGCAGTGGTACGTAAGACCC
GCAAGTATCATGCCGTGGTGCTAGTGGACGCTGAGGACAAGGTGTGGCAG
GGCCGGAGCATGGGCGTCAAGTTCCAGATCTTCAAGGGCGGGGAAGAGGT
GGAGGGCTCGAGCACACCCCGTGCGCACAAGGACAACATATTTTGGTTCA
ACGTTTACGAATTCCTTCTACCAGGCCTTTACACGTTGCGCTACACAGTG
GACACTTTTAACAAGGACATCAAGCCACTCTGCCTGCGCGTGGAGGTTCG
TGCTCGCAGGGCTCCGACCTCGGTGCGCTCCGTGCTCAATGGCCACCTGA
GCTTTCTCAATGTCTCGCGCGGCGGTCGTTACAGCCTTAGACAATCGGTT
GAGCTGGACATACCCGAGGACGCAGATGAGGTGGTGGGCCTGCGCATAGC
TCTCCTCCAGCTTAAAGAGACATTACCGGCCGGCGCGCTGCTGGAATGTC
CCGAGGATCTAGGCGGCAGCGGGAGCAGCGGCAGCGTCGGTATGGGGGCC
GAGGGGGAATCAGGGGCAGCCCGGGCGTCCGTGTGCATCTGGACGGACAC
TCTGCAAGCACAATGGATCAACCATCTGATGGAGGCAGAGACGGCCCAGG
AGGTGATGGAGGGCCTTCTACTTCTTGAATCCTGCTTGCACCCGGAGTGG
CTCAAGCCCTGGTTCCACCCCTTGCGCCGGGCTTACGCTGCTTCGACCAC
CCACCTGCTGCGTATGGGTACCACCCCGGCGGCGGTGGCCTTCCACCTCT
TCATCCTGGATAAGGCTCTCTTGTACGACAAAGAGAAAAAGGTGTTGCGC
AAGACGCGCGGGGGAGCAGCAAGTACAGGGGGAAACTTTCGTCGTTCGAC
ACAGCGCTCGCGATTGGAGGAGCTGAGCGACGAAGACGATGAAGAAGTGA
CGGAGAGCGAGGAGGAGGGGGACTCCGATGAGGATGATAATCGCAAGCGT
ACGCGTTCACGCAAGCAGCACGGCAAGAGGAGCTCTTGGGCGGCCTCATC
ATCTTCTTCGTCCCGCGGTGTCAAGCACGCCCAGCGATCGTCCTTCCGCA
AGCGGGCGGTGGTGTCTTACAAGGAAGCAGGTGATAATGACATCTACGAC
GAGGAGTCGGAGGACGAGCCGTCGGTGGCGGCGAAGGAGGATGCTGCACA
AGGCAGTGGAGGGAGCAGGAGCAGGCCGCGTGGAGGCGGGCCCATCGTGT
CGGTAGAGGAATTTGCGAAGGAGTGCCTCGTGGTGTTACGACAGCTCAAG
GCCCACCCAGCGGCCGGGCCGTTCAAGGAAGACGTGAAGGCAGTGGACGT
ACCGGGCTACAGCGACATCGTGCCTTACCCCATGAGTTTGATAACGTTGG
AGACGAAGGCTCGGCGGCAGGCGTACGACATGTCGCTGGAGAAATTCGCA
GAGGATGTGAGCAAGCTATGGGAGAACAGTGCCCTGTACAACGGTGAGGA
TCACGTGGTCACCCAAATGGCTCTTGAGCTCAAGGTCCTCTTCGAAACAT
GGCAGAGGGAGATGAAGCGCCGCATCGTGACGTGA

Synonyms

Publications