jgi.p|Nanoce1779_2|593197, mRNA_5936 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593197
Unique NamemRNA_5936
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1290
Alignment locationscaffold_14:111369..113033 -

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Properties
Property NameValue
TranscriptId593283
TrackFilteredModels2
ProteinId593197
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:111369..113033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593197gene_5936Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593197mRNA_5936-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5936CDS_5936Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5936 ID=mRNA_5936|Name=jgi.p|Nanoce1779_2|593197|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp
ACAGCTACGGTCGCGCTCTTGGATCATCCTACCATGGGTCTCCTCCGCTG
CAGCGTCGCCCCTTTGCCATTCCTCATCCTGGGCCTTGTCCTTTCCGCCT
CCATCTTCCTGACCCTCCTCCCAACCACGGCCTCCAAAGATATCGAAGTC
GGCGTCGAGGCCGACGATCCCATCGTGGCCCACAAGGCGGGAAGCGGCAG
CAAGAAATCGGGCTTGTTCGAGCGCTTGTCCCGGGTGCTCGATACCGGCG
CGGCCGAAGACGACGACGGCGTTCCCTTTACAGATGAGCAGTGGCATGCG
ACCAAGGATTTAGGCGAGCCTGTAGATCCGTCTTTGATGACATTCAAGAT
GCCCTCTGAGATGGTCGATGCATGGGACAAGGACAAGGGACTGAGAATAT
TGCAACAGACGATGGACGGTGATTTGACAGGGCCTATGCGGGGCCTGGTG
GCGGACATCAAAGACTTACATGAGGCCTGGTCCAAGCCACACCTGTTTCG
GGCACTTATGTCTCAAATTCCCCTGTTCCACGCAATCAAGCCAATTCAGA
CCATCGTAATGGGCAAGAATGAAGAGGATTACACGGCGGAAGATGGGATG
GCGGCCGCTGGGGCGTTCAAGGGATTTATGGTGAGGGCACTTGATTCCAT
GGACGTGCTGCGAAGTCCTGAGAGATTGGCGGAAAAAATGCTAACCTACG
CGAGTTCCAAGGACAAGACGTTGCTGGATTTGTTTGCCAAGGCAGCCCGG
GGGGAGGACGAGAACCACAGGGAGATAAACAACTTCTTTTTGAAGAAAGA
GTTGGGTGATTTGATCGATCTGGACTTTTTAGGGTTCAATGGCGTGGAGC
CAAGCTTTCTTGGAGGCTTCCGTGACAAGGTCAAGGAGTTCTCTCCCATT
ATGTACGACTCGATTGTCACCGACCCCAATATGAAGAAATACATCGAAAA
TCCCTTCCAGGCTTTGGAGGAAGCAAAAGACATTCTGAGGACCTTCAAGG
GACAATAGAAAAAAGAAGGAGGGAGCAGGGAAGAGGAAGGGAGGGACAGA
GGAGCTGGAGGTAAATTATTGTTTAGAAGACTTGAAAATGATAGCAGGGA
ATAGTGGGGAAAATGACGGCATTAAGGCGTGAAACGACTGCAAAGAAAGC
AGAGAAAAAGTCTAGAGACGGAAGTGAACACAAAGCACACAAAGAAGTGA
ATAGAGGTCAGACGGTGGCGGAGAAGACATCAAGCACGCCCCCTCAAACA
CACACAAACGCACACTTACACAAGCGCACACAGTACACCA
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protein sequence of jgi.p|Nanoce1779_2|593197

>mRNA_5936-protein ID=mRNA_5936-protein|Name=jgi.p|Nanoce1779_2|593197|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MGLLRCSVAPLPFLILGLVLSASIFLTLLPTTASKDIEVGVEADDPIVAH
KAGSGSKKSGLFERLSRVLDTGAAEDDDGVPFTDEQWHATKDLGEPVDPS
LMTFKMPSEMVDAWDKDKGLRILQQTMDGDLTGPMRGLVADIKDLHEAWS
KPHLFRALMSQIPLFHAIKPIQTIVMGKNEEDYTAEDGMAAAGAFKGFMV
RALDSMDVLRSPERLAEKMLTYASSKDKTLLDLFAKAARGEDENHREINN
FFLKKELGDLIDLDFLGFNGVEPSFLGGFRDKVKEFSPIMYDSIVTDPNM
KKYIENPFQALEEAKDILRTFKGQ*
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mRNA from alignment at scaffold_14:111369..113033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5936 ID=mRNA_5936|Name=jgi.p|Nanoce1779_2|593197|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp|location=Sequence derived from alignment at scaffold_14:111369..113033- (Nannochloropsis oceanica)
ACAGCTACGGTCGCGCTCTTGGATCATCCTACCATGGGTCTCCTCCGCTG
CAGCGTCGCCCCTTTGCCATTCCTCATCCTGGGCCTTGTCCTTTCCGCCT
CCATCTTCCTGACCCTCCTCCCAACCACGGCCTCCAAAGATATCGAAGTC
GGCGTCGAGGCCGACGATCCCATCGTGGCCCACAAGGCGGGAAGCGGCAG
CAAGAAATCGGGCTTGTTCGAGCGCTTGTCCCGGGTGCTCGATACCGGCG
CGGCCGAAGACGACGACGGCGTTCCCTTTACAGATGAGCAGTGGCATGCG
ACCAAGGATTTAGGCGAGCCTGTAGATCCGTCTTTGATGACATTCAAGAT
GCCCTCTGAGATGGTCGATGCATGGGACAAGGACAAGGGACTGAGAATAT
TGCAACAGACGATGGACGGTGATTTGACAGGGCCTATGCGGGGCCTGGTG
GCGGACATCAAAGACTTACATGAGGCCTGGTCCAAGCCACACCTGTTTCG
GGCACTTATGTCTCAAATTCCCCTGTTCCACGCAATCAAGCCAATTCAGA
CCATCGTAATGGGCAAGAATGAAGAGGATTACACGGCGGAAGATGGGATG
GCGGCCGCTGGGGCGTTCAAGGGATTTATGGTGAGGGCACTTGATTCCAT
GGACGTGCTGCGAAGTCCTGAGAGATTGGCGGAAAAAATGCTAACCTACG
CGAGTTCCAAGGACAAGACGTTGCTGGATTTGTTTGCCAAGGCAGCCCGG
GGGGAGGACGAGAACCACAGGGAGATAAACAACTTCTTTTTGAAGAAAGA
GTTGGGTGATTGTGAGTGATATTGAGCGGATTAGAGGAGTGAGCGGTTAA
AGGAAATGATAGAGGGAGAGGAGGAACGGAGACATATTTTCACAATTCTC
ATGTCATTAACGCCATGTACGCGACCGTCCGTGTAAGGCGCATTTCCTCC
CCCTTCTCTCACGCACCCACCGACCTCCCCCCTCGTTCATGCACCCCCGA
CACATGCTTGTACCCACATGCTTACCCACCCCTCAATGCTCGTCCTTTAA
TGCACCCTTTCATTCTGTTACACCCACAGTGATCGATCTGGACTTTTTAG
GGTTCAATGGCGTGGAGCCAAGCTTTCTTGGAGGCTTCCGTGACAAGGTA
CAGTACAGCCGTCGTCGAGGCCCTTCCTCCTACCAGCATTCCATCTCTCC
CTTGGCTGCTCCCACCCACACCTCCCCCCCTCCCTCTCCCTCCCCTTTTT
CCAGGTCAAGGAGTTCTCTCCCATTATGTACGACTCGATTGTCACCGACC
CCAATATGAAGAAATACATCGAAAATCCCTTCCAGGCTTTGGAGGAAGCA
AAAGACATTCTGAGGACCTTCAAGGGACAATAGAAAAAAGAAGGAGGGAG
CAGGGAAGAGGAAGGGAGGGACAGAGGAGCTGGAGGTAAATTATTGTTTA
GAAGACTTGAAAATGATAGCAGGGAATAGTGGGGAAAATGACGGCATTAA
GGCGTGAAACGACTGCAAAGAAAGCAGAGAAAAAGTCTAGAGACGGAAGT
GAACACAAAGCACACAAAGAAGTGAATAGAGGTCAGACGGTGGCGGAGAA
GACATCAAGCACGCCCCCTCAAACACACACAAACGCACACTTACACAAGC
GCACACAGTACACCA
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Coding sequence (CDS) from alignment at scaffold_14:111369..113033-

>mRNA_5936 ID=mRNA_5936|Name=jgi.p|Nanoce1779_2|593197|organism=Nannochloropsis oceanica|type=CDS|length=2925bp|location=Sequence derived from alignment at scaffold_14:111369..113033- (Nannochloropsis oceanica)
GTCAAGGAGTTCTCTCCCATTATGTACGACTCGATTGTCACCGACCCCAA
TATGAAGAAATACATCGAAAATCCCTTCCAGGCTTTGGAGGAAGCAAAAG
ACATTCTGAGGACCTTCAAGGGACAATAGTGATCGATCTGGACTTTTTAG
GGTTCAATGGCGTGGAGCCAAGCTTTCTTGGAGGCTTCCGTGACAAGATG
GGTCTCCTCCGCTGCAGCGTCGCCCCTTTGCCATTCCTCATCCTGGGCCT
TGTCCTTTCCGCCTCCATCTTCCTGACCCTCCTCCCAACCACGGCCTCCA
AAGATATCGAAGTCGGCGTCGAGGCCGACGATCCCATCGTGGCCCACAAG
GCGGGAAGCGGCAGCAAGAAATCGGGCTTGTTCGAGCGCTTGTCCCGGGT
GCTCGATACCGGCGCGGCCGAAGACGACGACGGCGTTCCCTTTACAGATG
AGCAGTGGCATGCGACCAAGGATTTAGGCGAGCCTGTAGATCCGTCTTTG
ATGACATTCAAGATGCCCTCTGAGATGGTCGATGCATGGGACAAGGACAA
GGGACTGAGAATATTGCAACAGACGATGGACGGTGATTTGACAGGGCCTA
TGCGGGGCCTGGTGGCGGACATCAAAGACTTACATGAGGCCTGGTCCAAG
CCACACCTGTTTCGGGCACTTATGTCTCAAATTCCCCTGTTCCACGCAAT
CAAGCCAATTCAGACCATCGTAATGGGCAAGAATGAAGAGGATTACACGG
CGGAAGATGGGATGGCGGCCGCTGGGGCGTTCAAGGGATTTATGGTGAGG
GCACTTGATTCCATGGACGTGCTGCGAAGTCCTGAGAGATTGGCGGAAAA
AATGCTAACCTACGCGAGTTCCAAGGACAAGACGTTGCTGGATTTGTTTG
CCAAGGCAGCCCGGGGGGAGGACGAGAACCACAGGGAGATAAACAACTTC
TTTTTGAAGAAAGAGTTGGGTGATTGTCAAGGAGTTCTCTCCCATTATGT
ACGACTCGATTGTCACCGACCCCAATATGAAGAAATACATCGAAAATCCC
TTCCAGGCTTTGGAGGAAGCAAAAGACATTCTGAGGACCTTCAAGGGACA
ATAGTGATCGATCTGGACTTTTTAGGGTTCAATGGCGTGGAGCCAAGCTT
TCTTGGAGGCTTCCGTGACAAGATGGGTCTCCTCCGCTGCAGCGTCGCCC
CTTTGCCATTCCTCATCCTGGGCCTTGTCCTTTCCGCCTCCATCTTCCTG
ACCCTCCTCCCAACCACGGCCTCCAAAGATATCGAAGTCGGCGTCGAGGC
CGACGATCCCATCGTGGCCCACAAGGCGGGAAGCGGCAGCAAGAAATCGG
GCTTGTTCGAGCGCTTGTCCCGGGTGCTCGATACCGGCGCGGCCGAAGAC
GACGACGGCGTTCCCTTTACAGATGAGCAGTGGCATGCGACCAAGGATTT
AGGCGAGCCTGTAGATCCGTCTTTGATGACATTCAAGATGCCCTCTGAGA
TGGTCGATGCATGGGACAAGGACAAGGGACTGAGAATATTGCAACAGACG
ATGGACGGTGATTTGACAGGGCCTATGCGGGGCCTGGTGGCGGACATCAA
AGACTTACATGAGGCCTGGTCCAAGCCACACCTGTTTCGGGCACTTATGT
CTCAAATTCCCCTGTTCCACGCAATCAAGCCAATTCAGACCATCGTAATG
GGCAAGAATGAAGAGGATTACACGGCGGAAGATGGGATGGCGGCCGCTGG
GGCGTTCAAGGGATTTATGGTGAGGGCACTTGATTCCATGGACGTGCTGC
GAAGTCCTGAGAGATTGGCGGAAAAAATGCTAACCTACGCGAGTTCCAAG
GACAAGACGTTGCTGGATTTGTTTGCCAAGGCAGCCCGGGGGGAGGACGA
GAACCACAGGGAGATAAACAACTTCTTTTTGAAGAAAGAGTTGGGTGATT
GTCAAGGAGTTCTCTCCCATTATGTACGACTCGATTGTCACCGACCCCAA
TATGAAGAAATACATCGAAAATCCCTTCCAGGCTTTGGAGGAAGCAAAAG
ACATTCTGAGGACCTTCAAGGGACAATAGTGATCGATCTGGACTTTTTAG
GGTTCAATGGCGTGGAGCCAAGCTTTCTTGGAGGCTTCCGTGACAAGATG
GGTCTCCTCCGCTGCAGCGTCGCCCCTTTGCCATTCCTCATCCTGGGCCT
TGTCCTTTCCGCCTCCATCTTCCTGACCCTCCTCCCAACCACGGCCTCCA
AAGATATCGAAGTCGGCGTCGAGGCCGACGATCCCATCGTGGCCCACAAG
GCGGGAAGCGGCAGCAAGAAATCGGGCTTGTTCGAGCGCTTGTCCCGGGT
GCTCGATACCGGCGCGGCCGAAGACGACGACGGCGTTCCCTTTACAGATG
AGCAGTGGCATGCGACCAAGGATTTAGGCGAGCCTGTAGATCCGTCTTTG
ATGACATTCAAGATGCCCTCTGAGATGGTCGATGCATGGGACAAGGACAA
GGGACTGAGAATATTGCAACAGACGATGGACGGTGATTTGACAGGGCCTA
TGCGGGGCCTGGTGGCGGACATCAAAGACTTACATGAGGCCTGGTCCAAG
CCACACCTGTTTCGGGCACTTATGTCTCAAATTCCCCTGTTCCACGCAAT
CAAGCCAATTCAGACCATCGTAATGGGCAAGAATGAAGAGGATTACACGG
CGGAAGATGGGATGGCGGCCGCTGGGGCGTTCAAGGGATTTATGGTGAGG
GCACTTGATTCCATGGACGTGCTGCGAAGTCCTGAGAGATTGGCGGAAAA
AATGCTAACCTACGCGAGTTCCAAGGACAAGACGTTGCTGGATTTGTTTG
CCAAGGCAGCCCGGGGGGAGGACGAGAACCACAGGGAGATAAACAACTTC
TTTTTGAAGAAAGAGTTGGGTGATT
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Synonyms
Publications