jgi.p|Nanoce1779_2|594256, mRNA_6232 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594256
Unique Name	mRNA_6232
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1799
Alignment location	scaffold_15:74411..76237 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594342
Track	FilteredModels2
ProteinId	594256

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:74411..76237 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594256	gene_6232	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594256	mRNA_6232-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6232	CDS_6232	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:74411..76237+
coding sequence from alignment at scaffold_15:74411..76237+

mRNA sequence

>mRNA_6232 ID=mRNA_6232|Name=jgi.p|Nanoce1779_2|594256|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp
CAGCCCTTTGCAAACACACACAAGGCCCGCTCCGTCCATGTGGCCACAAC
TACGCCAACAAATTATGCTGCATATTCCGTTCTTTGTCGTTGTCTTCGAT
ACCGCTGCCTTTGCATCCTCTCGAATGGTGCGGGGGAAATCTAATCCTTC
CGCTGACACCACGCCAATCACCGTCCCTGCGATCAGCACTGCCGCTGCGA
CTGACAAGCTCCTCCTACTTAATGACCTGTCGCTTGAGCAGGCCTATCTA
CACCACTCGAGTATGGGAGCAGTCCCGGCCCAGCAAGCCGCCCGTCTCGC
TGCGGGTTCCTACTCAGGCACAACGGGACAGGCCCTTGGTGGCTGGCGAG
TGCAAGCCACGTACCAAAATATTAATTCTGTGGCCGTCATCTCAACGAGG
CCCGGCGCAGACAGTGAAAAGCAGACCTGTGCCTTGGCTTTTCGGGGAAG
TGACGACCGCCTAGATTGGAGGAATGATTATATGGCTCGACCATTTCCTA
TGCTGCTGTGCGGTGAAGAGGAGGAAGACAAGGAACGTTTCTTTTTGGAT
ATACGTACGACACGTGCAGACAATGCGGAAGATGGATCACAATACACGGA
AGAAAGTAGAAGACGACGTGGCCAACGCTGGCAACAGACATCATCACTAG
TAGGCGGCCAGCAAAGAATGGAGACCGGGAACAGCACCAACGAGAATGAA
AGCAGAAGAAGCAATAGCAGCAGTGAACAGATCAACGGCGGCGCATCCAC
TCTAGTAAACCTACGACAGCGTTGCCCCCGTCTTCTTAGCCTCCACGTGC
TTCATTACGGCTTTTACCAATCCTTCCGCCTGCTAAGCAGCGGCACCACC
CTCGCCCAGGACTGGGGGAGGTACTTTCGGAACGGGACGTGCGACCCTGA
CATCTCCATTATCACGGGTCATAGCCTTGGAGGTGCTTTCACGATATATG
CCTCGATTTTGGGCTGGCCAGGAGTGCCTATTACCTTTGCAGCCCCGAGG
GCTGTGATCAATGGCTCGTGCCCCACAACTGCAGGAAGAGGGGCTAGAAC
TACGACCACCACTATGGTGGAGAGGAGTACGGATGAAGACGTACCTATTA
CGCGTATCTACCTCACCGATGATCCGGTCCCGGCCACGCTTCCTGTGAAT
GATGCCGTACGTCTGGGGATCGGAGGTTCTTGGGTCCACTGCGGCTGTGC
ATTGGCGTTACAGCCGTCCGTGACCGCTGGGGAGGAGGAAGGAGAGGGGG
GAAAAGGAAAGCAGGAATTTTTTGCGGCTAAGGCCATGGGCTGTGGTTCG
AATGAGCCCTTGCGAGAGGCAACGCTGCTCCCATCTCTGCCATCCCTGCC
TGTATCGGTGGCATTGCCCTCCCTAGGTCAAAATCGTGGATGGGGAGACG
AGGAAGAAGTGGAAGCAGCAGATGCGAATCCTCTACTGCCAGGCGGTTTG
TTAGCCCCTGAAGAGTTGAAGAGACATGTACACACACGATACGTCCGAGC
GATGGATGAAGCGTGCCAAGGACCATTGGATAGTATGCGGTGTTTGTTCG
ATCACGAAGTATGAAATGGAGAGACGCGCAACGAAAATGAGAAATTACTG
AAAAAGTGAGTTCTATGTCGCTTGCTTGAGTAGTTGAAGTTTTCTTGTGT
TGCTTGAGTCCCATCTCTATGTTTTGCCCTATTCATGTTACAATTAATAA
TATATGCCAGAAAAGGACGCTGATGTCGAAAAAAGCAGGGCATGAACTGA
CTTAACAATTATTGGTGATCCTCCGACTCTTTGCCTTGGAAATCAAAAT

protein sequence of jgi.p|Nanoce1779_2|594256

>mRNA_6232-protein ID=mRNA_6232-protein|Name=jgi.p|Nanoce1779_2|594256|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MWPQLRQQIMLHIPFFVVVFDTAAFASSRMVRGKSNPSADTTPITVPAIS
TAAATDKLLLLNDLSLEQAYLHHSSMGAVPAQQAARLAAGSYSGTTGQAL
GGWRVQATYQNINSVAVISTRPGADSEKQTCALAFRGSDDRLDWRNDYMA
RPFPMLLCGEEEEDKERFFLDIRTTRADNAEDGSQYTEESRRRRGQRWQQ
TSSLVGGQQRMETGNSTNENESRRSNSSSEQINGGASTLVNLRQRCPRLL
SLHVLHYGFYQSFRLLSSGTTLAQDWGRYFRNGTCDPDISIITGHSLGGA
FTIYASILGWPGVPITFAAPRAVINGSCPTTAGRGARTTTTTMVERSTDE
DVPITRIYLTDDPVPATLPVNDAVRLGIGGSWVHCGCALALQPSVTAGEE
EGEGGKGKQEFFAAKAMGCGSNEPLREATLLPSLPSLPVSVALPSLGQNR
GWGDEEEVEAADANPLLPGGLLAPEELKRHVHTRYVRAMDEACQGPLDSM
RCLFDHEV*

mRNA from alignment at scaffold_15:74411..76237+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6232 ID=mRNA_6232|Name=jgi.p|Nanoce1779_2|594256|organism=Nannochloropsis oceanica|type=mRNA|length=1827bp|location=Sequence derived from alignment at scaffold_15:74411..76237+ (Nannochloropsis oceanica)
CAGCCCTTTGCAAACACACACAAGGCCCGCTCCGTCCATGTGGCCACAAC
TACGCCAACAAATTATGCTGCATATTCCGTTCTTTGTCGTTGTCTTCGAT
ACCGCTGCCTTTGCATCCTCTCGAATGGTGCGGGGGAAATCTAATCCTTC
CGCTGACACCACGCCAATCACCGTCCCTGCGATCAGCACTGCCGCTGCGA
CTGACAAGCTCCTCCTACTTAATGACCTGTCGCTTGAGCAGGCCTATCTA
CACCACTCGAGTATGGGAGCAGTCCCGGGTGCAGTAGGGGGGGTCATCGT
CTTTAGCCCAGCAAGCCGCCCGTCTCGCTGCGGGTTCCTACTCAGGCACA
ACGGGACAGGCCCTTGGTGGCTGGCGAGTGCAAGCCACGTACCAAAATAT
TAATTCTGTGGCCGTCATCTCAACGAGGCCCGGCGCAGACAGTGAAAAGC
AGACCTGTGCCTTGGCTTTTCGGGGAAGTGACGACCGCCTAGATTGGAGG
AATGATTATATGGCTCGACCATTTCCTATGCTGCTGTGCGGTGAAGAGGA
GGAAGACAAGGAACGTTTCTTTTTGGATATACGTACGACACGTGCAGACA
ATGCGGAAGATGGATCACAATACACGGAAGAAAGTAGAAGACGACGTGGC
CAACGCTGGCAACAGACATCATCACTAGTAGGCGGCCAGCAAAGAATGGA
GACCGGGAACAGCACCAACGAGAATGAAAGCAGAAGAAGCAATAGCAGCA
GTGAACAGATCAACGGCGGCGCATCCACTCTAGTAAACCTACGACAGCGT
TGCCCCCGTCTTCTTAGCCTCCACGTGCTTCATTACGGCTTTTACCAATC
CTTCCGCCTGCTAAGCAGCGGCACCACCCTCGCCCAGGACTGGGGGAGGT
ACTTTCGGAACGGGACGTGCGACCCTGACATCTCCATTATCACGGGTCAT
AGCCTTGGAGGTGCTTTCACGATATATGCCTCGATTTTGGGCTGGCCAGG
AGTGCCTATTACCTTTGCAGCCCCGAGGGCTGTGATCAATGGCTCGTGCC
CCACAACTGCAGGAAGAGGGGCTAGAACTACGACCACCACTATGGTGGAG
AGGAGTACGGATGAAGACGTACCTATTACGCGTATCTACCTCACCGATGA
TCCGGTCCCGGCCACGCTTCCTGTGAATGATGCCGTACGTCTGGGGATCG
GAGGTTCTTGGGTCCACTGCGGCTGTGCATTGGCGTTACAGCCGTCCGTG
ACCGCTGGGGAGGAGGAAGGAGAGGGGGGAAAAGGAAAGCAGGAATTTTT
TGCGGCTAAGGCCATGGGCTGTGGTTCGAATGAGCCCTTGCGAGAGGCAA
CGCTGCTCCCATCTCTGCCATCCCTGCCTGTATCGGTGGCATTGCCCTCC
CTAGGTCAAAATCGTGGATGGGGAGACGAGGAAGAAGTGGAAGCAGCAGA
TGCGAATCCTCTACTGCCAGGCGGTTTGTTAGCCCCTGAAGAGTTGAAGA
GACATGTACACACACGATACGTCCGAGCGATGGATGAAGCGTGCCAAGGA
CCATTGGATAGTATGCGGTGTTTGTTCGATCACGAAGTATGAAATGGAGA
GACGCGCAACGAAAATGAGAAATTACTGAAAAAGTGAGTTCTATGTCGCT
TGCTTGAGTAGTTGAAGTTTTCTTGTGTTGCTTGAGTCCCATCTCTATGT
TTTGCCCTATTCATGTTACAATTAATAATATATGCCAGAAAAGGACGCTG
ATGTCGAAAAAAGCAGGGCATGAACTGACTTAACAATTATTGGTGATCCT
CCGACTCTTTGCCTTGGAAATCAAAAT

Coding sequence (CDS) from alignment at scaffold_15:74411..76237+

>mRNA_6232 ID=mRNA_6232|Name=jgi.p|Nanoce1779_2|594256|organism=Nannochloropsis oceanica|type=CDS|length=3054bp|location=Sequence derived from alignment at scaffold_15:74411..76237+ (Nannochloropsis oceanica)
ATGTGGCCACAACTACGCCAACAAATTATGCTGCATATTCCGTTCTTTGT
CGTTGTCTTCGATACCGCTGCCTTTGCATCCTCTCGAATGGTGCGGGGGA
AATCTAATCCTTCCGCTGACACCACGCCAATCACCGTCCCTGCGATCAGC
ACTGCCGCTGCGACTGACAAGCTCCTCCTACTTAATGACCTGTCGCTTGA
GCAGGCCTATCTACACCACTCGAGTATGGGAGCAGTCCCGGCCCAGCAAG
CCGCCCGTCTCGCTGCGGGTTCCTACTCAGGCACAACGGGACAGGCCCTT
GGTGGCTGGCGAGTGCAAGCCACGTACCAAAATATTAATTCTGTGGCCGT
CATCTCAACGAGGCCCGGCGCAGACAGTGAAAAGCAGACCTGTGCCTTGG
CTTTTCGGGGAAGTGACGACCGCCTAGATTGGAGGAATGATTATATGGCT
CGACCATTTCCTATGCTGCTGTGCGGTGAAGAGGAGGAAGACAAGGAACG
TTTCTTTTTGGATATACGTACGACACGTGCAGACAATGCGGAAGATGGAT
CACAATACACGGAAGAAAGTAGAAGACGACGTGGCCAACGCTGGCAACAG
ACATCATCACTAGTAGGCGGCCAGCAAAGAATGGAGACCGGGAACAGCAC
CAACGAGAATGAAAGCAGAAGAAGCAATAGCAGCAGTGAACAGATCAACG
GCGGCGCATCCACTCTAGTAAACCTACGACAGCGTTGCCCCCGTCTTCTT
AGCCTCCACGTGCTTCATTACGGCTTTTACCAATCCTTCCGCCTGCTAAG
CAGCGGCACCACCCTCGCCCAGGACTGGGGGAGGTACTTTCGGAACGGGA
CGTGCGACCCTGACATCTCCATTATCACGGGTCATAGCCTTGGAGGTGCT
TTCACGATATATGCCTCGATTTTGGGCTGGCCAGGAGTGCCTATTACCTT
TGCAGCCCCGAGGGCTGTGATCAATGGCTCGTGCCCCACAACTGCAGGAA
GAGGGGCTAGAACTACGACCACCACTATGGTGGAGAGGAGTACGGATGAA
GACGTACCTATTACGCGTATCTACCTCACCGATGATCCGGTCCCGGCCAC
GCTTCCTGTGAATGATGCCGTACGTCTGGGGATCGGAGGTTCTTGGGTCC
ACTGCGGCTGTGCATTGGCGTTACAGCCGTCCGTGACCGCTGGGGAGGAG
GAAGGAGAGGGGGGAAAAGGAAAGCAGGAATTTTTTGCGGCTAAGGCCAT
GGGCTGTGGTTCGAATGAGCCCTTGCGAGAGGCAACGCTGCTCCCATCTC
TGCCATCCCTGCCTGTATCGGTGGCATTGCCCTCCCTAGGTCAAAATCGT
GGATGGGGAGACGAGGAAGAAGTGGAAGCAGCAGATGCGAATCCTCTACT
GCCAGGCGGTTTGTTAGCCCCTGAAGAGTTGAAGAGACATGTACACACAC
GATACGTCCGAGCGATGGATGAAGCGTGCCAAGGACCATTGGATAGTATG
CGGTGTTTGTTCGATCACGAAGTATGAATGTGGCCACAACTACGCCAACA
AATTATGCTGCATATTCCGTTCTTTGTCGTTGTCTTCGATACCGCTGCCT
TTGCATCCTCTCGAATGGTGCGGGGGAAATCTAATCCTTCCGCTGACACC
ACGCCAATCACCGTCCCTGCGATCAGCACTGCCGCTGCGACTGACAAGCT
CCTCCTACTTAATGACCTGTCGCTTGAGCAGGCCTATCTACACCACTCGA
GTATGGGAGCAGTCCCGGCCCAGCAAGCCGCCCGTCTCGCTGCGGGTTCC
TACTCAGGCACAACGGGACAGGCCCTTGGTGGCTGGCGAGTGCAAGCCAC
GTACCAAAATATTAATTCTGTGGCCGTCATCTCAACGAGGCCCGGCGCAG
ACAGTGAAAAGCAGACCTGTGCCTTGGCTTTTCGGGGAAGTGACGACCGC
CTAGATTGGAGGAATGATTATATGGCTCGACCATTTCCTATGCTGCTGTG
CGGTGAAGAGGAGGAAGACAAGGAACGTTTCTTTTTGGATATACGTACGA
CACGTGCAGACAATGCGGAAGATGGATCACAATACACGGAAGAAAGTAGA
AGACGACGTGGCCAACGCTGGCAACAGACATCATCACTAGTAGGCGGCCA
GCAAAGAATGGAGACCGGGAACAGCACCAACGAGAATGAAAGCAGAAGAA
GCAATAGCAGCAGTGAACAGATCAACGGCGGCGCATCCACTCTAGTAAAC
CTACGACAGCGTTGCCCCCGTCTTCTTAGCCTCCACGTGCTTCATTACGG
CTTTTACCAATCCTTCCGCCTGCTAAGCAGCGGCACCACCCTCGCCCAGG
ACTGGGGGAGGTACTTTCGGAACGGGACGTGCGACCCTGACATCTCCATT
ATCACGGGTCATAGCCTTGGAGGTGCTTTCACGATATATGCCTCGATTTT
GGGCTGGCCAGGAGTGCCTATTACCTTTGCAGCCCCGAGGGCTGTGATCA
ATGGCTCGTGCCCCACAACTGCAGGAAGAGGGGCTAGAACTACGACCACC
ACTATGGTGGAGAGGAGTACGGATGAAGACGTACCTATTACGCGTATCTA
CCTCACCGATGATCCGGTCCCGGCCACGCTTCCTGTGAATGATGCCGTAC
GTCTGGGGATCGGAGGTTCTTGGGTCCACTGCGGCTGTGCATTGGCGTTA
CAGCCGTCCGTGACCGCTGGGGAGGAGGAAGGAGAGGGGGGAAAAGGAAA
GCAGGAATTTTTTGCGGCTAAGGCCATGGGCTGTGGTTCGAATGAGCCCT
TGCGAGAGGCAACGCTGCTCCCATCTCTGCCATCCCTGCCTGTATCGGTG
GCATTGCCCTCCCTAGGTCAAAATCGTGGATGGGGAGACGAGGAAGAAGT
GGAAGCAGCAGATGCGAATCCTCTACTGCCAGGCGGTTTGTTAGCCCCTG
AAGAGTTGAAGAGACATGTACACACACGATACGTCCGAGCGATGGATGAA
GCGTGCCAAGGACCATTGGATAGTATGCGGTGTTTGTTCGATCACGAAGT
ATGA

Synonyms

Publications