jgi.p|Nanoce1779_2|595395, mRNA_7042 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595395
Unique NamemRNA_7042
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1163
Alignment locationscaffold_16:139169..140331 -

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Properties
Property NameValue
TranscriptId595481
TrackFilteredModels2
ProteinId595395
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:139169..140331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595395gene_7042Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595395mRNA_7042-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7042CDS_7042Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7042 ID=mRNA_7042|Name=jgi.p|Nanoce1779_2|595395|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp
CCCAACTCTCATGGTTTAAGCCCTCTGGGCCTCCCTCCCAACCACGCTCA
CAGACCCCTTCCTCCCTCCATCCCTCCCCCCCCACCGCCGACACCACCTT
GGCTGGTAGTGATGTAATTTTCCTAAGGGCGGGAGGAAGGAGACCGTGCG
TTACTGCCACGGAATGGAGTCCGTGAAATCCTACGTCACCTTGTAGGATG
AAATTCAATTTATTACGGCTATTCACGTCATTTTTACAATTCCTTTTGTT
GCCTGTCGTATCATGCAAATCGGGTGCTTTCTTTCTCTTCTTCTTCATCT
TTCCCATCTCCTCAACTTCCACCTTCTTCCCGCCATCATCATCATCATCA
TCATCATCATCATCATCATCCTCATCATCATCATCATCCCCATCATTCTC
CGCTTCCTCCTCCCTCTCCCTGACAGTCACCGCCTCAAACAACAAGGGAG
CGTCCCCTCCAGTAAAAATAATCGGCGGTCGAAACCCCTCTATCTCTTCC
TCCTTTTTCCTGAAGTCTTTCTTTTCCTCCCCTTTTTCAACGTATTCAGA
AGGATCGCCATACTCCACATTCTTTCCTCCACTCGTCCCTCCCTCCCTCT
CTCCGCTCCTCCTCCTCCTTCTCCTCTTCCTCTCCCTCTGACGGGCAAAC
TCCCGGGTGAAAGCCAGGGAATAATCTCTTATCACAGCTATAGCACCATT
CACCACACCACTTTGAATGGCTCGTGCAGTAGAATGCACGAAACGAGGCG
GAGGGAAGGAGGAGGGACCGTTTAAGGAAGCGGAGGAGGAAGGGATGGAA
GGAAGGCCCAAGGAAGGGAGCAACGCCGTCCGGCTATGCAGCGTTTGGAG
TGCAAGACGGAGGCCAGGCATGATCATCCCTCCTCTACATTCACCCTCTT
CTGTGCCAGCAGTAAAGGTCAGTGCTGTGCCTGCGTCGACAACGAGGCAG
GGCCACCCATAGAGACCCGCTGCCCCTATCAAAGCTAAAGCTCGATCCAC
CCCTAGGGTAGGATAGCTATGTTGCAAGGAGGGTATGACCGAGTAACTGG
TGATAAGATGAATTGTAGAGTAGTGCTGCTGCCAGAGGGAGGTTTGGGAT
GGGACGACGGAGGCAAGCAGGAAGGGAATGGAGGGGGACAGTGAGAGGAG
GGCGGGTGGGGGG
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protein sequence of jgi.p|Nanoce1779_2|595395

>mRNA_7042-protein ID=mRNA_7042-protein|Name=jgi.p|Nanoce1779_2|595395|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MQIGCFLSLLLHLSHLLNFHLLPAIIIIIIIIIIIILIIIIIPIILRFLL
PLPDSHRLKQQGSVPSSKNNRRSKPLYLFLLFPEVFLFLPFFNVFRRIAI
LHILSSTRPSLPLSAPPPPSPLPLPLTGKLPGESQGIISYHSYSTIHHTT
LNGSCSRMHETRRREGGGTV*
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mRNA from alignment at scaffold_16:139169..140331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7042 ID=mRNA_7042|Name=jgi.p|Nanoce1779_2|595395|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp|location=Sequence derived from alignment at scaffold_16:139169..140331- (Nannochloropsis oceanica)
CCCAACTCTCATGGTTTAAGCCCTCTGGGCCTCCCTCCCAACCACGCTCA
CAGACCCCTTCCTCCCTCCATCCCTCCCCCCCCACCGCCGACACCACCTT
GGCTGGTAGTGATGTAATTTTCCTAAGGGCGGGAGGAAGGAGACCGTGCG
TTACTGCCACGGAATGGAGTCCGTGAAATCCTACGTCACCTTGTAGGATG
AAATTCAATTTATTACGGCTATTCACGTCATTTTTACAATTCCTTTTGTT
GCCTGTCGTATCATGCAAATCGGGTGCTTTCTTTCTCTTCTTCTTCATCT
TTCCCATCTCCTCAACTTCCACCTTCTTCCCGCCATCATCATCATCATCA
TCATCATCATCATCATCATCCTCATCATCATCATCATCCCCATCATTCTC
CGCTTCCTCCTCCCTCTCCCTGACAGTCACCGCCTCAAACAACAAGGGAG
CGTCCCCTCCAGTAAAAATAATCGGCGGTCGAAACCCCTCTATCTCTTCC
TCCTTTTTCCTGAAGTCTTTCTTTTCCTCCCCTTTTTCAACGTATTCAGA
AGGATCGCCATACTCCACATTCTTTCCTCCACTCGTCCCTCCCTCCCTCT
CTCCGCTCCTCCTCCTCCTTCTCCTCTTCCTCTCCCTCTGACGGGCAAAC
TCCCGGGTGAAAGCCAGGGAATAATCTCTTATCACAGCTATAGCACCATT
CACCACACCACTTTGAATGGCTCGTGCAGTAGAATGCACGAAACGAGGCG
GAGGGAAGGAGGAGGGACCGTTTAAGGAAGCGGAGGAGGAAGGGATGGAA
GGAAGGCCCAAGGAAGGGAGCAACGCCGTCCGGCTATGCAGCGTTTGGAG
TGCAAGACGGAGGCCAGGCATGATCATCCCTCCTCTACATTCACCCTCTT
CTGTGCCAGCAGTAAAGGTCAGTGCTGTGCCTGCGTCGACAACGAGGCAG
GGCCACCCATAGAGACCCGCTGCCCCTATCAAAGCTAAAGCTCGATCCAC
CCCTAGGGTAGGATAGCTATGTTGCAAGGAGGGTATGACCGAGTAACTGG
TGATAAGATGAATTGTAGAGTAGTGCTGCTGCCAGAGGGAGGTTTGGGAT
GGGACGACGGAGGCAAGCAGGAAGGGAATGGAGGGGGACAGTGAGAGGAG
GGCGGGTGGGGGG
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Coding sequence (CDS) from alignment at scaffold_16:139169..140331-

>mRNA_7042 ID=mRNA_7042|Name=jgi.p|Nanoce1779_2|595395|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_16:139169..140331- (Nannochloropsis oceanica)
ATGCAAATCGGGTGCTTTCTTTCTCTTCTTCTTCATCTTTCCCATCTCCT
CAACTTCCACCTTCTTCCCGCCATCATCATCATCATCATCATCATCATCA
TCATCATCCTCATCATCATCATCATCCCCATCATTCTCCGCTTCCTCCTC
CCTCTCCCTGACAGTCACCGCCTCAAACAACAAGGGAGCGTCCCCTCCAG
TAAAAATAATCGGCGGTCGAAACCCCTCTATCTCTTCCTCCTTTTTCCTG
AAGTCTTTCTTTTCCTCCCCTTTTTCAACGTATTCAGAAGGATCGCCATA
CTCCACATTCTTTCCTCCACTCGTCCCTCCCTCCCTCTCTCCGCTCCTCC
TCCTCCTTCTCCTCTTCCTCTCCCTCTGACGGGCAAACTCCCGGGTGAAA
GCCAGGGAATAATCTCTTATCACAGCTATAGCACCATTCACCACACCACT
TTGAATGGCTCGTGCAGTAGAATGCACGAAACGAGGCGGAGGGAAGGAGG
AGGGACCGTTTAA
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Synonyms
Publications