jgi.p|Nanoce1779_2|595436, mRNA_7055 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595436
Unique NamemRNA_7055
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length565
Alignment locationscaffold_16:171812..172376 +

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Properties
Property NameValue
TranscriptId595522
TrackFilteredModels2
ProteinId595436
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:171812..172376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595436gene_7055Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595436mRNA_7055-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7055CDS_7055Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7055 ID=mRNA_7055|Name=jgi.p|Nanoce1779_2|595436|organism=Nannochloropsis oceanica|type=mRNA|length=565bp
TTGCTAAAAAAGATTTTATGACGGAAAAGACACCATGGCTGGTGCTGCGG
CGGGACGACGACGACGACGAGGAGGAGGAGGTGAAGGAGGAGGAGGAGGG
AAGGACAAAGGCAAACACGCCCAAGCCGTTTGAGGTGAGTAAAGATAGGC
CCGCCGCCACAGCGACAGCAGCAGCAAAAGTGCTGGCCGTCGTGCCTTCC
CCTGCAAGTGATCTTCTTCTCTTTCGTCGTTTCCTGCTGTCGTTGTCATT
TGCAATATTGTTGGGGATGGTGGCTTTAAGGCACGTGGGGCGAGAGGCGC
TAGTAGACGACAAGGCTTGTTCGTCCATAATGCTCCTCCGGCGGCTGCGG
CTGCTATTACGACCGCTGCTACTCCTTATATTGCCTCTGCTATTGATGTT
GCTGCTGCCCGTGGCTGCTGGTAGCCGTCGCTGCTGCTGTTGCTTGATTC
CAGACGTCAAATCAGAACCCCATGCGATGGTGGTAAGATGGAGGAGTCGC
TCAATAATACTCCGCGCCCCCAGGAAATTGGCTGAATCTGTTGGGTAGCC
ACTTGCGTCTCTATT
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protein sequence of jgi.p|Nanoce1779_2|595436

>mRNA_7055-protein ID=mRNA_7055-protein|Name=jgi.p|Nanoce1779_2|595436|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MTEKTPWLVLRRDDDDDEEEEVKEEEEGRTKANTPKPFEVSKDRPAATAT
AAAKVLAVVPSPASDLLLFRRFLLSLSFAILLGMVALRHVGREALVDDKA
CSSIMLLRRLRLLLRPLLLLILPLLLMLLLPVAAGSRRCCCCLIPDVKSE
PHAMVVRWRSRSIILRAPRKLAESVG*
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mRNA from alignment at scaffold_16:171812..172376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7055 ID=mRNA_7055|Name=jgi.p|Nanoce1779_2|595436|organism=Nannochloropsis oceanica|type=mRNA|length=565bp|location=Sequence derived from alignment at scaffold_16:171812..172376+ (Nannochloropsis oceanica)
TTGCTAAAAAAGATTTTATGACGGAAAAGACACCATGGCTGGTGCTGCGG
CGGGACGACGACGACGACGAGGAGGAGGAGGTGAAGGAGGAGGAGGAGGG
AAGGACAAAGGCAAACACGCCCAAGCCGTTTGAGGTGAGTAAAGATAGGC
CCGCCGCCACAGCGACAGCAGCAGCAAAAGTGCTGGCCGTCGTGCCTTCC
CCTGCAAGTGATCTTCTTCTCTTTCGTCGTTTCCTGCTGTCGTTGTCATT
TGCAATATTGTTGGGGATGGTGGCTTTAAGGCACGTGGGGCGAGAGGCGC
TAGTAGACGACAAGGCTTGTTCGTCCATAATGCTCCTCCGGCGGCTGCGG
CTGCTATTACGACCGCTGCTACTCCTTATATTGCCTCTGCTATTGATGTT
GCTGCTGCCCGTGGCTGCTGGTAGCCGTCGCTGCTGCTGTTGCTTGATTC
CAGACGTCAAATCAGAACCCCATGCGATGGTGGTAAGATGGAGGAGTCGC
TCAATAATACTCCGCGCCCCCAGGAAATTGGCTGAATCTGTTGGGTAGCC
ACTTGCGTCTCTATT
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Coding sequence (CDS) from alignment at scaffold_16:171812..172376+

>mRNA_7055 ID=mRNA_7055|Name=jgi.p|Nanoce1779_2|595436|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_16:171812..172376+ (Nannochloropsis oceanica)
ATGACGGAAAAGACACCATGGCTGGTGCTGCGGCGGGACGACGACGACGA
CGAGGAGGAGGAGGTGAAGGAGGAGGAGGAGGGAAGGACAAAGGCAAACA
CGCCCAAGCCGTTTGAGGTGAGTAAAGATAGGCCCGCCGCCACAGCGACA
GCAGCAGCAAAAGTGCTGGCCGTCGTGCCTTCCCCTGCAAGTGATCTTCT
TCTCTTTCGTCGTTTCCTGCTGTCGTTGTCATTTGCAATATTGTTGGGGA
TGGTGGCTTTAAGGCACGTGGGGCGAGAGGCGCTAGTAGACGACAAGGCT
TGTTCGTCCATAATGCTCCTCCGGCGGCTGCGGCTGCTATTACGACCGCT
GCTACTCCTTATATTGCCTCTGCTATTGATGTTGCTGCTGCCCGTGGCTG
CTGGTAGCCGTCGCTGCTGCTGTTGCTTGATTCCAGACGTCAAATCAGAA
CCCCATGCGATGGTGGTAAGATGGAGGAGTCGCTCAATAATACTCCGCGC
CCCCAGGAAATTGGCTGAATCTGTTGGGTAG
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Synonyms
Publications