jgi.p|Nanoce1779_2|595467, mRNA_7061 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595467
Unique NamemRNA_7061
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1960
Alignment locationscaffold_16:194083..196042 -

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Properties
Property NameValue
TranscriptId595553
TrackFilteredModels2
ProteinId595467
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:194083..196042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595467gene_7061Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595467mRNA_7061-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7061CDS_7061Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7061 ID=mRNA_7061|Name=jgi.p|Nanoce1779_2|595467|organism=Nannochloropsis oceanica|type=mRNA|length=1960bp
GGACAGGTGGCTGGTGGAAGGGAGGGAAGGCGAGAGGGAGGGAGGGAAGG
TAGAGCGCACCAAAAGGCCGTACGAAAGCAATGGCGCTTTTGGCAGCCAT
TTTTAGGAGGGGCCAAGTTTATGCTATTGCAGGGATTAAGCTGGTCTTTT
TTGACGCTGTCCATTGTGGTAGAAATCTTGTTTGTTATCTCGACGTTTGC
GGTGGGGTTTGAGTTGTTTGTGGGAGCGGCTGTGGTAGCGGGCGGCTTCT
TTTTGGTCTCGGAAGTGTTGATGATTGTGAGCTTGCATTTTTACATGCCT
ACGACGACTACGACTGTGACCACTACGGGATTGACGGTGATGGAGAAGAA
GGTGGAGGAGGTGGAGGAGATGTTGGTGGAGAGGGAGGGAGTGGAGAAGG
ACGAGATGATGATGGAGGAAAAGGTGGACGTGACGACAGCGGCGACGACA
AACGCTCTCCTAAGAACCGGAAAGCAGCGGCTGCTCTTGGCCAAAGAAAG
TGCTACGACAACTACTACTACCGTGACAATGACCACGGAGCAGACCAGCA
AGACGTCTACTTCATTTATGCCTGTCCGGGTCGACGAGGCTTCCCTTGAG
CAATTCCGCCGGCTCACCGTTATAACCGTTCTGAGCAACATGCAATACCT
GCCCTTCCTCCTTCCCATCCTTCCCTTTATTCTCTCCGGTCTCCCTCTCC
CTGTGGCATCTTTGCACTGGTTCGGGGCTTTTTGTTGTCTGACATCAGCA
GTCGTTTTGAATGCCTATGTCAAAACCACGTTGGCCAAAGCGGGGCATCG
TCTTAACTCCTTCCAGCGCTCCCTTCTTCATGCCCTCCCCTCGCTCATTT
ATGCAGCCCCGGGTGTTATTTGCTTTTTTGCGTGGAAGCAACACCAAGGT
GGGAGGGGGGACGGGAAGCAGGGCGCGGTGTCCGCGTTCCCGGCTTGGGC
GGTGCTCACGGCCATGCATTATCTGTACCTTTTTCTCACGTTTCGCGGAA
AACCGGAAGTGACGGGAGAGAGATATTTGGGCGAAAAGTTAGAGTTATGG
AAAGGCGGTTGGTCTCTTTACTATTTTTTGGAAGGGATAGATCAATATTT
TCAGGCGAGGTTTGTTTTTATGGACCCGAATCTGGATCTGAAGGGGAAAC
CGCATGTGTTGGCGTTTCACCCGCATGGAGTTCAGCCATTTACGACGTGT
TGGATTCAACTTTCGCGGGCCTGGAGAGAGGGGGTGGGGAAAGGACAGAG
GTTTTGTGTAATGACTGCGAGTGTCATGCACTATGTGCCTTTGATGCGCG
ATATTCTACAGTGGCTCGGGGGGCGGGAAGTGAGCAGGGAAGCCATTTCG
TACGCACTGGGCCGTCGAGAGTCTGTGCTATTGGTCCCAGGCGGACAGCA
AGAGATGATGGAGTCCCAATCTCAGATGGGCGAAATTCGGATCATCACGA
AGCACGTCGGCTTTATTAGATTAGCGCTCCAAACAGGCGCACCGCTCGTG
CCTGTGCTCTCATTTGGCGAAGTCGAAGTGATGGACTTTGTCCGGTACCC
GCGTCTACAGCGTTTCTTTATCTCGCGCATTGGTATCCCGGTTCCCTTCT
TTCCATACGGATTGTTTGGATTTCCCATCCCGAGGCCCGTGCCCGTGACG
GTCGTATTTGGCCGGCCCATTCCAGTGGAGAAGGTTGAGCAGCCGACGCA
GGAAGAGGTTCGAAAATTATCGAAAAAGTACTTTGAAAGTATTCAGGAGG
TGTTTGATAAAAATAAGACTGAGGCCCTAGGGCATGGGAATCATAGGCTG
GTCCTGTTGTAAGGGAGCCGAGAAGGGAAAAGGTGAGAGAGAGGGAGGTG
GATGAAGAGGGGGTTTTGGGGAGCACGGACTGACACAAAACAAAAATATA
AGATAGACATGCAGAAAGGCAACCCAATAATTGCATTTAATGACACCAGC
AAGAGAAGGA
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protein sequence of jgi.p|Nanoce1779_2|595467

>mRNA_7061-protein ID=mRNA_7061-protein|Name=jgi.p|Nanoce1779_2|595467|organism=Nannochloropsis oceanica|type=polypeptide|length=564bp
MLLQGLSWSFLTLSIVVEILFVISTFAVGFELFVGAAVVAGGFFLVSEVL
MIVSLHFYMPTTTTTVTTTGLTVMEKKVEEVEEMLVEREGVEKDEMMMEE
KVDVTTAATTNALLRTGKQRLLLAKESATTTTTTVTMTTEQTSKTSTSFM
PVRVDEASLEQFRRLTVITVLSNMQYLPFLLPILPFILSGLPLPVASLHW
FGAFCCLTSAVVLNAYVKTTLAKAGHRLNSFQRSLLHALPSLIYAAPGVI
CFFAWKQHQGGRGDGKQGAVSAFPAWAVLTAMHYLYLFLTFRGKPEVTGE
RYLGEKLELWKGGWSLYYFLEGIDQYFQARFVFMDPNLDLKGKPHVLAFH
PHGVQPFTTCWIQLSRAWREGVGKGQRFCVMTASVMHYVPLMRDILQWLG
GREVSREAISYALGRRESVLLVPGGQQEMMESQSQMGEIRIITKHVGFIR
LALQTGAPLVPVLSFGEVEVMDFVRYPRLQRFFISRIGIPVPFFPYGLFG
FPIPRPVPVTVVFGRPIPVEKVEQPTQEEVRKLSKKYFESIQEVFDKNKT
EALGHGNHRLVLL*
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mRNA from alignment at scaffold_16:194083..196042-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7061 ID=mRNA_7061|Name=jgi.p|Nanoce1779_2|595467|organism=Nannochloropsis oceanica|type=mRNA|length=1960bp|location=Sequence derived from alignment at scaffold_16:194083..196042- (Nannochloropsis oceanica)
GGACAGGTGGCTGGTGGAAGGGAGGGAAGGCGAGAGGGAGGGAGGGAAGG
TAGAGCGCACCAAAAGGCCGTACGAAAGCAATGGCGCTTTTGGCAGCCAT
TTTTAGGAGGGGCCAAGTTTATGCTATTGCAGGGATTAAGCTGGTCTTTT
TTGACGCTGTCCATTGTGGTAGAAATCTTGTTTGTTATCTCGACGTTTGC
GGTGGGGTTTGAGTTGTTTGTGGGAGCGGCTGTGGTAGCGGGCGGCTTCT
TTTTGGTCTCGGAAGTGTTGATGATTGTGAGCTTGCATTTTTACATGCCT
ACGACGACTACGACTGTGACCACTACGGGATTGACGGTGATGGAGAAGAA
GGTGGAGGAGGTGGAGGAGATGTTGGTGGAGAGGGAGGGAGTGGAGAAGG
ACGAGATGATGATGGAGGAAAAGGTGGACGTGACGACAGCGGCGACGACA
AACGCTCTCCTAAGAACCGGAAAGCAGCGGCTGCTCTTGGCCAAAGAAAG
TGCTACGACAACTACTACTACCGTGACAATGACCACGGAGCAGACCAGCA
AGACGTCTACTTCATTTATGCCTGTCCGGGTCGACGAGGCTTCCCTTGAG
CAATTCCGCCGGCTCACCGTTATAACCGTTCTGAGCAACATGCAATACCT
GCCCTTCCTCCTTCCCATCCTTCCCTTTATTCTCTCCGGTCTCCCTCTCC
CTGTGGCATCTTTGCACTGGTTCGGGGCTTTTTGTTGTCTGACATCAGCA
GTCGTTTTGAATGCCTATGTCAAAACCACGTTGGCCAAAGCGGGGCATCG
TCTTAACTCCTTCCAGCGCTCCCTTCTTCATGCCCTCCCCTCGCTCATTT
ATGCAGCCCCGGGTGTTATTTGCTTTTTTGCGTGGAAGCAACACCAAGGT
GGGAGGGGGGACGGGAAGCAGGGCGCGGTGTCCGCGTTCCCGGCTTGGGC
GGTGCTCACGGCCATGCATTATCTGTACCTTTTTCTCACGTTTCGCGGAA
AACCGGAAGTGACGGGAGAGAGATATTTGGGCGAAAAGTTAGAGTTATGG
AAAGGCGGTTGGTCTCTTTACTATTTTTTGGAAGGGATAGATCAATATTT
TCAGGCGAGGTTTGTTTTTATGGACCCGAATCTGGATCTGAAGGGGAAAC
CGCATGTGTTGGCGTTTCACCCGCATGGAGTTCAGCCATTTACGACGTGT
TGGATTCAACTTTCGCGGGCCTGGAGAGAGGGGGTGGGGAAAGGACAGAG
GTTTTGTGTAATGACTGCGAGTGTCATGCACTATGTGCCTTTGATGCGCG
ATATTCTACAGTGGCTCGGGGGGCGGGAAGTGAGCAGGGAAGCCATTTCG
TACGCACTGGGCCGTCGAGAGTCTGTGCTATTGGTCCCAGGCGGACAGCA
AGAGATGATGGAGTCCCAATCTCAGATGGGCGAAATTCGGATCATCACGA
AGCACGTCGGCTTTATTAGATTAGCGCTCCAAACAGGCGCACCGCTCGTG
CCTGTGCTCTCATTTGGCGAAGTCGAAGTGATGGACTTTGTCCGGTACCC
GCGTCTACAGCGTTTCTTTATCTCGCGCATTGGTATCCCGGTTCCCTTCT
TTCCATACGGATTGTTTGGATTTCCCATCCCGAGGCCCGTGCCCGTGACG
GTCGTATTTGGCCGGCCCATTCCAGTGGAGAAGGTTGAGCAGCCGACGCA
GGAAGAGGTTCGAAAATTATCGAAAAAGTACTTTGAAAGTATTCAGGAGG
TGTTTGATAAAAATAAGACTGAGGCCCTAGGGCATGGGAATCATAGGCTG
GTCCTGTTGTAAGGGAGCCGAGAAGGGAAAAGGTGAGAGAGAGGGAGGTG
GATGAAGAGGGGGTTTTGGGGAGCACGGACTGACACAAAACAAAAATATA
AGATAGACATGCAGAAAGGCAACCCAATAATTGCATTTAATGACACCAGC
AAGAGAAGGA
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Coding sequence (CDS) from alignment at scaffold_16:194083..196042-

>mRNA_7061 ID=mRNA_7061|Name=jgi.p|Nanoce1779_2|595467|organism=Nannochloropsis oceanica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_16:194083..196042- (Nannochloropsis oceanica)
ATGCTATTGCAGGGATTAAGCTGGTCTTTTTTGACGCTGTCCATTGTGGT
AGAAATCTTGTTTGTTATCTCGACGTTTGCGGTGGGGTTTGAGTTGTTTG
TGGGAGCGGCTGTGGTAGCGGGCGGCTTCTTTTTGGTCTCGGAAGTGTTG
ATGATTGTGAGCTTGCATTTTTACATGCCTACGACGACTACGACTGTGAC
CACTACGGGATTGACGGTGATGGAGAAGAAGGTGGAGGAGGTGGAGGAGA
TGTTGGTGGAGAGGGAGGGAGTGGAGAAGGACGAGATGATGATGGAGGAA
AAGGTGGACGTGACGACAGCGGCGACGACAAACGCTCTCCTAAGAACCGG
AAAGCAGCGGCTGCTCTTGGCCAAAGAAAGTGCTACGACAACTACTACTA
CCGTGACAATGACCACGGAGCAGACCAGCAAGACGTCTACTTCATTTATG
CCTGTCCGGGTCGACGAGGCTTCCCTTGAGCAATTCCGCCGGCTCACCGT
TATAACCGTTCTGAGCAACATGCAATACCTGCCCTTCCTCCTTCCCATCC
TTCCCTTTATTCTCTCCGGTCTCCCTCTCCCTGTGGCATCTTTGCACTGG
TTCGGGGCTTTTTGTTGTCTGACATCAGCAGTCGTTTTGAATGCCTATGT
CAAAACCACGTTGGCCAAAGCGGGGCATCGTCTTAACTCCTTCCAGCGCT
CCCTTCTTCATGCCCTCCCCTCGCTCATTTATGCAGCCCCGGGTGTTATT
TGCTTTTTTGCGTGGAAGCAACACCAAGGTGGGAGGGGGGACGGGAAGCA
GGGCGCGGTGTCCGCGTTCCCGGCTTGGGCGGTGCTCACGGCCATGCATT
ATCTGTACCTTTTTCTCACGTTTCGCGGAAAACCGGAAGTGACGGGAGAG
AGATATTTGGGCGAAAAGTTAGAGTTATGGAAAGGCGGTTGGTCTCTTTA
CTATTTTTTGGAAGGGATAGATCAATATTTTCAGGCGAGGTTTGTTTTTA
TGGACCCGAATCTGGATCTGAAGGGGAAACCGCATGTGTTGGCGTTTCAC
CCGCATGGAGTTCAGCCATTTACGACGTGTTGGATTCAACTTTCGCGGGC
CTGGAGAGAGGGGGTGGGGAAAGGACAGAGGTTTTGTGTAATGACTGCGA
GTGTCATGCACTATGTGCCTTTGATGCGCGATATTCTACAGTGGCTCGGG
GGGCGGGAAGTGAGCAGGGAAGCCATTTCGTACGCACTGGGCCGTCGAGA
GTCTGTGCTATTGGTCCCAGGCGGACAGCAAGAGATGATGGAGTCCCAAT
CTCAGATGGGCGAAATTCGGATCATCACGAAGCACGTCGGCTTTATTAGA
TTAGCGCTCCAAACAGGCGCACCGCTCGTGCCTGTGCTCTCATTTGGCGA
AGTCGAAGTGATGGACTTTGTCCGGTACCCGCGTCTACAGCGTTTCTTTA
TCTCGCGCATTGGTATCCCGGTTCCCTTCTTTCCATACGGATTGTTTGGA
TTTCCCATCCCGAGGCCCGTGCCCGTGACGGTCGTATTTGGCCGGCCCAT
TCCAGTGGAGAAGGTTGAGCAGCCGACGCAGGAAGAGGTTCGAAAATTAT
CGAAAAAGTACTTTGAAAGTATTCAGGAGGTGTTTGATAAAAATAAGACT
GAGGCCCTAGGGCATGGGAATCATAGGCTGGTCCTGTTGTAA
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Synonyms
Publications