jgi.p|Nanoce1779_2|595873, mRNA_7173 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595873
Unique NamemRNA_7173
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length872
Alignment locationscaffold_16:453077..453948 -

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Properties
Property NameValue
TranscriptId595959
TrackFilteredModels2
ProteinId595873
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:453077..453948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595873gene_7173Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595873mRNA_7173-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7173CDS_7173Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7173 ID=mRNA_7173|Name=jgi.p|Nanoce1779_2|595873|organism=Nannochloropsis oceanica|type=mRNA|length=872bp
GGAGAGGTTGGAGAGATGGGTGCGGTAGCAGCAGCAGTAGTAGGAGTTAG
AGAGGAGAAGGGAGGAAGGGCGGGAGGGAGGACGAGGGAGAAGAGGAGGA
GGGAGTGCCGAGTTATTGAGTTGGGGGCCGGAACGGGGATCGCGGGAATC
GCTGCCTCTTTACTGGGAGCAGGCCACGTGGTCGTGACTGATCTTCCTCA
TGTTGTTCCTTTGATTCAAACCAACATTGATCTTAACGTTCCTCCTTCCT
CCCTCTCATCCTCGTCCTCGCCCCCGTGCATTGCCCGGGCTTATGCATGG
GGGGAGGGTACCGCCTGTCTGTTTGACGAGGGAAGAGGGGGAGAGAGCGA
CGACTGGAAGGGGGGCGCACAGGCAGCAAAAGGGAAGATCCAGGGAAAGA
GGGAGGTCGAAGACGAAGACGGGCGGGAGGACGAGGCGGAGGGAAAGTTT
GATGTCATCCTTCTGGCGGATGTTGTGTATGAACCGAAGTACTATTCTGC
CCTAGTAAAGGCGCTGAGGGACTTGTCTTATTCCGAGACTCTCATTATTT
TTGCTCACCGGGAACGGCATCCTGACTGCTCTTGGTTCTTTACAGAGGCC
GATAGGGAGTTTAGCAGGAAGATGGTTCATTGTGATTTTCAGGTGGAGGG
GGAGAGAGGCAGCGAGGAAGGACCCGCATGGAGGGGGGGGGGAAAGGCGG
CATGTCAGGATGTGGTAATATATGAGATGAGGTTGAAAAAGGGAAGGAAG
GAGGAAAGAGAGGAGGTGATAGGTTACTGAGGCGCTTAGAAAGGCATATG
TACTAATATTGCTATCCATAGAAATCAACGCGACGACGAATAATAGTAAT
GATAATAGTAACGACAATGACC
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protein sequence of jgi.p|Nanoce1779_2|595873

>mRNA_7173-protein ID=mRNA_7173-protein|Name=jgi.p|Nanoce1779_2|595873|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MGAVAAAVVGVREEKGGRAGGRTREKRRRECRVIELGAGTGIAGIAASLL
GAGHVVVTDLPHVVPLIQTNIDLNVPPSSLSSSSSPPCIARAYAWGEGTA
CLFDEGRGGESDDWKGGAQAAKGKIQGKREVEDEDGREDEAEGKFDVILL
ADVVYEPKYYSALVKALRDLSYSETLIIFAHRERHPDCSWFFTEADREFS
RKMVHCDFQVEGERGSEEGPAWRGGGKAACQDVVIYEMRLKKGRKEEREE
VIGY*
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mRNA from alignment at scaffold_16:453077..453948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7173 ID=mRNA_7173|Name=jgi.p|Nanoce1779_2|595873|organism=Nannochloropsis oceanica|type=mRNA|length=872bp|location=Sequence derived from alignment at scaffold_16:453077..453948- (Nannochloropsis oceanica)
GGAGAGGTTGGAGAGATGGGTGCGGTAGCAGCAGCAGTAGTAGGAGTTAG
AGAGGAGAAGGGAGGAAGGGCGGGAGGGAGGACGAGGGAGAAGAGGAGGA
GGGAGTGCCGAGTTATTGAGTTGGGGGCCGGAACGGGGATCGCGGGAATC
GCTGCCTCTTTACTGGGAGCAGGCCACGTGGTCGTGACTGATCTTCCTCA
TGTTGTTCCTTTGATTCAAACCAACATTGATCTTAACGTTCCTCCTTCCT
CCCTCTCATCCTCGTCCTCGCCCCCGTGCATTGCCCGGGCTTATGCATGG
GGGGAGGGTACCGCCTGTCTGTTTGACGAGGGAAGAGGGGGAGAGAGCGA
CGACTGGAAGGGGGGCGCACAGGCAGCAAAAGGGAAGATCCAGGGAAAGA
GGGAGGTCGAAGACGAAGACGGGCGGGAGGACGAGGCGGAGGGAAAGTTT
GATGTCATCCTTCTGGCGGATGTTGTGTATGAACCGAAGTACTATTCTGC
CCTAGTAAAGGCGCTGAGGGACTTGTCTTATTCCGAGACTCTCATTATTT
TTGCTCACCGGGAACGGCATCCTGACTGCTCTTGGTTCTTTACAGAGGCC
GATAGGGAGTTTAGCAGGAAGATGGTTCATTGTGATTTTCAGGTGGAGGG
GGAGAGAGGCAGCGAGGAAGGACCCGCATGGAGGGGGGGGGGAAAGGCGG
CATGTCAGGATGTGGTAATATATGAGATGAGGTTGAAAAAGGGAAGGAAG
GAGGAAAGAGAGGAGGTGATAGGTTACTGAGGCGCTTAGAAAGGCATATG
TACTAATATTGCTATCCATAGAAATCAACGCGACGACGAATAATAGTAAT
GATAATAGTAACGACAATGACC
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Coding sequence (CDS) from alignment at scaffold_16:453077..453948-

>mRNA_7173 ID=mRNA_7173|Name=jgi.p|Nanoce1779_2|595873|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_16:453077..453948- (Nannochloropsis oceanica)
ATGGGTGCGGTAGCAGCAGCAGTAGTAGGAGTTAGAGAGGAGAAGGGAGG
AAGGGCGGGAGGGAGGACGAGGGAGAAGAGGAGGAGGGAGTGCCGAGTTA
TTGAGTTGGGGGCCGGAACGGGGATCGCGGGAATCGCTGCCTCTTTACTG
GGAGCAGGCCACGTGGTCGTGACTGATCTTCCTCATGTTGTTCCTTTGAT
TCAAACCAACATTGATCTTAACGTTCCTCCTTCCTCCCTCTCATCCTCGT
CCTCGCCCCCGTGCATTGCCCGGGCTTATGCATGGGGGGAGGGTACCGCC
TGTCTGTTTGACGAGGGAAGAGGGGGAGAGAGCGACGACTGGAAGGGGGG
CGCACAGGCAGCAAAAGGGAAGATCCAGGGAAAGAGGGAGGTCGAAGACG
AAGACGGGCGGGAGGACGAGGCGGAGGGAAAGTTTGATGTCATCCTTCTG
GCGGATGTTGTGTATGAACCGAAGTACTATTCTGCCCTAGTAAAGGCGCT
GAGGGACTTGTCTTATTCCGAGACTCTCATTATTTTTGCTCACCGGGAAC
GGCATCCTGACTGCTCTTGGTTCTTTACAGAGGCCGATAGGGAGTTTAGC
AGGAAGATGGTTCATTGTGATTTTCAGGTGGAGGGGGAGAGAGGCAGCGA
GGAAGGACCCGCATGGAGGGGGGGGGGAAAGGCGGCATGTCAGGATGTGG
TAATATATGAGATGAGGTTGAAAAAGGGAAGGAAGGAGGAAAGAGAGGAG
GTGATAGGTTACTGA
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Synonyms
Publications