jgi.p|Nanoce1779_2|596085, mRNA_7219 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596085
Unique NamemRNA_7219
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1354
Alignment locationscaffold_16:604312..605665 -

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Properties
Property NameValue
TranscriptId596171
TrackFilteredModels2
ProteinId596085
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:604312..605665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596085gene_7219Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596085mRNA_7219-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7219CDS_7219Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7219 ID=mRNA_7219|Name=jgi.p|Nanoce1779_2|596085|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp
ACAAAATACTAGTTCCTTGATTGGAAAAGTTGTAAACAACGCAACGCATT
GATCAACTTTTACTTATTCTCATTCGTTCACTCTTCGTCCTTCCGTTTCC
TCCTTCAGCACACCACCTGCGCCACGTCACTGGTTAAGTAATCATATTTT
AGGCTCTTTACTCGCTCCTTACCTCTCAATCGCCTTATCCGACTTTCCCC
TGTAAGTAATGCACAAGGCTGTTCTTTTCTCCCATCTTTCTGCGATATGA
GGCCACCACGCCCACCTCCGCCAGCAAGCAGAAGGGGTCGCTGCCATCAG
GAAAATATGCACCTCCTCTCTGCATGATTCCTCCTATGGCGCAGCACAAC
ATACAAATCATTCGCAACAATACACGTCATCCAAATAACAGTAGGTTACG
GACCTCCCTACCCTCTTCCCTCTCGTGGCATGTCAAAATCAACTGCGCTC
CCCGTATATGCAAAGATTTTTAACCTCACAATCAGAACCACTGAATAAAT
CTTGAGCTCTCTCATAAAATGGCGCAAAGCAATAACTTCTCATCCTCTTG
TGGGATAGGTGCGGTCTCACTCCTGCCACCATATGCTCACCCACGGCCCA
CTATGGCCCCCTTTCACTACGCTGGGGAGGCAGTCTTGTCAAACATCTTA
TTAATCGGGAAGTTTTCGACCACACATAGTATGGGAGTGTGGTTGTTGAG
AGCATGTACAACATATTTCAGTCCTGTTGATGTCCCAGGTGACGGCCCAT
GTGATGGAAGAAGGAAGATGAGACTCTGCTCCAGCCCTCCCCGCCTCATC
AAGCTCCCTCACGTCCATCGAGAGGTTATCAGCCGTGTTTTCGCCTTAAA
ATTTTACTCGTCGAGAGAAAACAGCCCTGTTGGTGATAGTCTTGGTTGGG
ATTTGACGGAGACTTCGTCTTCCAGAAGATCTTTTTTGAGAGGTGGGGCG
GGCTTTGCACGGACAATGGGGGAAAGAGACCTCCTTGGAGGACAGGCCGA
GCGTATGCACAAGTAATATAAAATTGCGTGTGTGAGCTAAATGATGGACT
AGGAGGCTTGTTTGGACTCTGTCTCGGATAAAGTGAACATACTACCGGGG
ATGGTTGTGCGAGGCGAGTGCCTGAACGGGACGTCACGGTGAAAGGCCGG
TGGGAGGAAGAGGGACCTTGTAATAAGATCCTGGAACCGGGAGTCGCCGG
TACAAAATTAAAACTGCCCGTTTGCTTCCTTTCGTCCTCACTACTTTGTG
TACGCATGGGTTTCGGGCAGGCATGTGCACTATAAGTTGCCCCAAATGCC
AATGGGCTGTCCCTCCGGAAGTGACGAACAAGATCACCAACAGGCGTTCA
GTTT
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protein sequence of jgi.p|Nanoce1779_2|596085

>mRNA_7219-protein ID=mRNA_7219-protein|Name=jgi.p|Nanoce1779_2|596085|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MAQSNNFSSSCGIGAVSLLPPYAHPRPTMAPFHYAGEAVLSNILLIGKFS
TTHSMGVWLLRACTTYFSPVDVPGDGPCDGRRKMRLCSSPPRLIKLPHVH
REVISRVFALKFYSSRENSPVGDSLGWDLTETSSSRRSFLRGGAGFARTM
GERDLLGGQAERMHK*
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mRNA from alignment at scaffold_16:604312..605665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7219 ID=mRNA_7219|Name=jgi.p|Nanoce1779_2|596085|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp|location=Sequence derived from alignment at scaffold_16:604312..605665- (Nannochloropsis oceanica)
ACAAAATACTAGTTCCTTGATTGGAAAAGTTGTAAACAACGCAACGCATT
GATCAACTTTTACTTATTCTCATTCGTTCACTCTTCGTCCTTCCGTTTCC
TCCTTCAGCACACCACCTGCGCCACGTCACTGGTTAAGTAATCATATTTT
AGGCTCTTTACTCGCTCCTTACCTCTCAATCGCCTTATCCGACTTTCCCC
TGTAAGTAATGCACAAGGCTGTTCTTTTCTCCCATCTTTCTGCGATATGA
GGCCACCACGCCCACCTCCGCCAGCAAGCAGAAGGGGTCGCTGCCATCAG
GAAAATATGCACCTCCTCTCTGCATGATTCCTCCTATGGCGCAGCACAAC
ATACAAATCATTCGCAACAATACACGTCATCCAAATAACAGTAGGTTACG
GACCTCCCTACCCTCTTCCCTCTCGTGGCATGTCAAAATCAACTGCGCTC
CCCGTATATGCAAAGATTTTTAACCTCACAATCAGAACCACTGAATAAAT
CTTGAGCTCTCTCATAAAATGGCGCAAAGCAATAACTTCTCATCCTCTTG
TGGGATAGGTGCGGTCTCACTCCTGCCACCATATGCTCACCCACGGCCCA
CTATGGCCCCCTTTCACTACGCTGGGGAGGCAGTCTTGTCAAACATCTTA
TTAATCGGGAAGTTTTCGACCACACATAGTATGGGAGTGTGGTTGTTGAG
AGCATGTACAACATATTTCAGTCCTGTTGATGTCCCAGGTGACGGCCCAT
GTGATGGAAGAAGGAAGATGAGACTCTGCTCCAGCCCTCCCCGCCTCATC
AAGCTCCCTCACGTCCATCGAGAGGTTATCAGCCGTGTTTTCGCCTTAAA
ATTTTACTCGTCGAGAGAAAACAGCCCTGTTGGTGATAGTCTTGGTTGGG
ATTTGACGGAGACTTCGTCTTCCAGAAGATCTTTTTTGAGAGGTGGGGCG
GGCTTTGCACGGACAATGGGGGAAAGAGACCTCCTTGGAGGACAGGCCGA
GCGTATGCACAAGTAATATAAAATTGCGTGTGTGAGCTAAATGATGGACT
AGGAGGCTTGTTTGGACTCTGTCTCGGATAAAGTGAACATACTACCGGGG
ATGGTTGTGCGAGGCGAGTGCCTGAACGGGACGTCACGGTGAAAGGCCGG
TGGGAGGAAGAGGGACCTTGTAATAAGATCCTGGAACCGGGAGTCGCCGG
TACAAAATTAAAACTGCCCGTTTGCTTCCTTTCGTCCTCACTACTTTGTG
TACGCATGGGTTTCGGGCAGGCATGTGCACTATAAGTTGCCCCAAATGCC
AATGGGCTGTCCCTCCGGAAGTGACGAACAAGATCACCAACAGGCGTTCA
GTTT
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Coding sequence (CDS) from alignment at scaffold_16:604312..605665-

>mRNA_7219 ID=mRNA_7219|Name=jgi.p|Nanoce1779_2|596085|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_16:604312..605665- (Nannochloropsis oceanica)
ATGGCGCAAAGCAATAACTTCTCATCCTCTTGTGGGATAGGTGCGGTCTC
ACTCCTGCCACCATATGCTCACCCACGGCCCACTATGGCCCCCTTTCACT
ACGCTGGGGAGGCAGTCTTGTCAAACATCTTATTAATCGGGAAGTTTTCG
ACCACACATAGTATGGGAGTGTGGTTGTTGAGAGCATGTACAACATATTT
CAGTCCTGTTGATGTCCCAGGTGACGGCCCATGTGATGGAAGAAGGAAGA
TGAGACTCTGCTCCAGCCCTCCCCGCCTCATCAAGCTCCCTCACGTCCAT
CGAGAGGTTATCAGCCGTGTTTTCGCCTTAAAATTTTACTCGTCGAGAGA
AAACAGCCCTGTTGGTGATAGTCTTGGTTGGGATTTGACGGAGACTTCGT
CTTCCAGAAGATCTTTTTTGAGAGGTGGGGCGGGCTTTGCACGGACAATG
GGGGAAAGAGACCTCCTTGGAGGACAGGCCGAGCGTATGCACAAGTAA
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Synonyms
Publications