jgi.p|Nanoce1779_2|557976, mRNA_6990 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|557976
Unique NamemRNA_6990
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1232
Alignment locationscaffold_17:633794..635157 -

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Properties
Property NameValue
TranscriptId558062
TrackFilteredModels2
ProteinId557976
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:633794..635157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557976gene_6990Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557976mRNA_6990-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6990CDS_6990Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6990 ID=mRNA_6990|Name=jgi.p|Nanoce1779_2|557976|organism=Nannochloropsis oceanica|type=mRNA|length=1232bp
ATGCCGACCTTCTCCCTGGCCCCCGCCGCCGCCAGCACTCCCACTCCCAC
CACCGCCTCGTCCTTCTTCACGGCCAAGACCCTCGCCAACCCCCATGCAC
ACGATACCCGCGCCCTCCTCCTCACGTCCCTGGCCATGGTCTCCTACTCG
GAAGGCGTCAAACTCCTCGCCGCCCGCAAGATCTGTGCCTCCACAACCGC
ACGCAAGTTCATGCACGTCGGTTGTGGCCCCATCTTTCTGCTATGCTGGC
CTCTCTTTTCCCAGTCGTCACATGCCTCCTCCTTTGCCATGGTGGCGCCC
TTGGCCTTGACGTCTTTCTTCACACTTGTCGGCCTGGGAATAGCACAAAA
TCAGGCGACCGTGCAAAGCATGAGCAGGACCGGCGCCCGGCAGGAGTTGT
TGCGCGGGCCTTTCTTGTATGGAAGCGTCATGATCGTTGCTACGCTGGTG
TACTGGCGGCACCTGACTGCCGCCCTGTGTATTTCGTGCCTGTGTGCGGG
CGACGGCTTCGCGGACTTGATTGGTCGTCGGTGGCGGATTCCCTGGTGTC
GTAGCAAGTCGTGGGTGGGCACGCTGGGCTTCATCGCTGCCAGTGTCTTG
ACCTCTTTCTGCCTCGCGGCATATTTCCAATACCACGGGTGGATCGCCGT
TGCAGAGAGAGGGAGGAGGGGGGTGGGGGAGAGGGTGTGGGGGGCCACGT
TGTTGAGTGCGGCGGCGGAGACATTACCGGTTCCGGAGGGGTGGGATAAT
GTGGTAGTGTTTGTTGCGGTCGTGCTGGCGGATTGGCTGGTTATGAGGGG
GAGGGGGGAGGGGTTGTAGGAGGGAGGGAGGGAGGGAGGATGGCCCCAAG
GGGGATGGGATAGGAAGCACACCGGTCGAATGAGCAATGGATGTACATAA
AATGATTACAATTAAGTATGACATGGGCAAACGAAAGTCAGTATCGAATC
GAAGGTGCTTATGCTTTGGTGCTTCCTCTATTACCACGGATTTGTTCACG
GCCCGGCGGGGGATTTGCTGGGGGCACTGCATGCCTTTATCACATGCTCC
GCCTGTACTCCTCTGTCTACGCCTGCGCATCGTCTCGTCATAATCATCCC
CCCCCTCTCTACACACACATCTTAGCCCCCTCCTACCTCGGCTTCGACTC
GGGACAAGCCCGCGGTCCCCACTCGGTCTTCTCACGCCGACAACACGTCA
TAATGTCCTGGGCGGTACAACAGCGTTACCCC
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protein sequence of jgi.p|Nanoce1779_2|557976

>mRNA_6990-protein ID=mRNA_6990-protein|Name=jgi.p|Nanoce1779_2|557976|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MPTFSLAPAAASTPTPTTASSFFTAKTLANPHAHDTRALLLTSLAMVSYS
EGVKLLAARKICASTTARKFMHVGCGPIFLLCWPLFSQSSHASSFAMVAP
LALTSFFTLVGLGIAQNQATVQSMSRTGARQELLRGPFLYGSVMIVATLV
YWRHLTAALCISCLCAGDGFADLIGRRWRIPWCRSKSWVGTLGFIAASVL
TSFCLAAYFQYHGWIAVAERGRRGVGERVWGATLLSAAAETLPVPEGWDN
VVVFVAVVLADWLVMRGRGEGL*
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mRNA from alignment at scaffold_17:633794..635157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6990 ID=mRNA_6990|Name=jgi.p|Nanoce1779_2|557976|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp|location=Sequence derived from alignment at scaffold_17:633794..635157- (Nannochloropsis oceanica)
ATGCCGACCTTCTCCCTGGCCCCCGCCGCCGCCAGCACTCCCACTCCCAC
CACCGCCTCGTCCTTCTTCACGGCCAAGACCCTCGCCAACCCCCATGCAC
ACGATACCCGCGCCCTCCTCCTCACGTCCCTGGCCATGGTCTCCTACTCG
GAAGGCGTCAAACTCCTCGCCGCCCGCAAGATCTGTGCCTCCACAACCGC
ACGCAAGTTCATGCACGTCGGTTGTGGCCCCATCTTTCTGCTATGCTGGC
CTCTCTTTTCCCAGTCGTCACATGCCTCCTCCTTTGCCATGGTGGCGCCC
TTGGCCTTGACGTCTTTCTTCACACTTGTCGGCCTGGGAATAGCACAAAA
TCAGGCGACCGTGCAAAGCATGAGCAGGACCGGCGCCCGGCAGGAGTTGT
TGCGCGGGCCTTTCTTGTATGGAAGCGTCATGATCGTTGCTACGCTGGTG
TACTGGCGGCACCTGACTGCCGCCCTGTGTATTTCGTGCCTGTGTGCGGG
CGACGGCTTCGCGGACTTGATTGGTCGTCGGTGTGCACCTTTGGCGATTC
AAAACGTGAAACACGACGACGACGGAAAAAAACTCACATGGCAGTCAGAG
CCACAACTCCAACACCACCACCACGACCAACCACAACAACAACAACAACA
ACCACAACAAAGAGGGCGGATTCCCTGGTGTCGTAGCAAGTCGTGGGTGG
GCACGCTGGGCTTCATCGCTGCCAGTGTCTTGACCTCTTTCTGCCTCGCG
GCATATTTCCAATACCACGGGTGGATCGCCGTTGCAGAGAGAGGGAGGAG
GGGGGTGGGGGAGAGGGTGTGGGGGGCCACGTTGTTGAGTGCGGCGGCGG
AGACATTACCGGTTCCGGAGGGGTGGGATAATGTGGTAGTGTTTGTTGCG
GTCGTGCTGGCGGATTGGCTGGTTATGAGGGGGAGGGGGGAGGGGTTGTA
GGAGGGAGGGAGGGAGGGAGGATGGCCCCAAGGGGGATGGGATAGGAAGC
ACACCGGTCGAATGAGCAATGGATGTACATAAAATGATTACAATTAAGTA
TGACATGGGCAAACGAAAGTCAGTATCGAATCGAAGGTGCTTATGCTTTG
GTGCTTCCTCTATTACCACGGATTTGTTCACGGCCCGGCGGGGGATTTGC
TGGGGGCACTGCATGCCTTTATCACATGCTCCGCCTGTACTCCTCTGTCT
ACGCCTGCGCATCGTCTCGTCATAATCATCCCCCCCCTCTCTACACACAC
ATCTTAGCCCCCTCCTACCTCGGCTTCGACTCGGGACAAGCCCGCGGTCC
CCACTCGGTCTTCTCACGCCGACAACACGTCATAATGTCCTGGGCGGTAC
AACAGCGTTACCCC
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Coding sequence (CDS) from alignment at scaffold_17:633794..635157-

>mRNA_6990 ID=mRNA_6990|Name=jgi.p|Nanoce1779_2|557976|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_17:633794..635157- (Nannochloropsis oceanica)
GGCGGATTCCCTGGTGTCGTAGCAAGTCGTGGGTGGGCACGCTGGGCTTC
ATCGCTGCCAGTGTCTTGACCTCTTTCTGCCTCGCGGCATATTTCCAATA
CCACGGGTGGATCGCCGTTGCAGAGAGAGGGAGGAGGGGGGTGGGGGAGA
GGGTGTGGGGGGCCACGTTGTTGAGTGCGGCGGCGGAGACATTACCGGTT
CCGGAGGGGTGGGATAATGTGGTAGTGTTTGTTGCGGTCGTGCTGGCGGA
TTGGCTGGTTATGAGGGGGAGGGGGGAGGGGTTGTAGATGCCGACCTTCT
CCCTGGCCCCCGCCGCCGCCAGCACTCCCACTCCCACCACCGCCTCGTCC
TTCTTCACGGCCAAGACCCTCGCCAACCCCCATGCACACGATACCCGCGC
CCTCCTCCTCACGTCCCTGGCCATGGTCTCCTACTCGGAAGGCGTCAAAC
TCCTCGCCGCCCGCAAGATCTGTGCCTCCACAACCGCACGCAAGTTCATG
CACGTCGGTTGTGGCCCCATCTTTCTGCTATGCTGGCCTCTCTTTTCCCA
GTCGTCACATGCCTCCTCCTTTGCCATGGTGGCGCCCTTGGCCTTGACGT
CTTTCTTCACACTTGTCGGCCTGGGAATAGCACAAAATCAGGCGACCGTG
CAAAGCATGAGCAGGACCGGCGCCCGGCAGGAGTTGTTGCGCGGGCCTTT
CTTGTATGGAAGCGTCATGATCGTTGCTACGCTGGTGTACTGGCGGCACC
TGACTGCCGCCCTGTGTATTTCGTGCCTGTGTGCGGGCGACGGCTTCGCG
GACTTGATTGGTCGTCGGTGGCGGATTCCCTGGTGTCGTAGCAAGTCGTG
GGTGGGCACGCTGGGCTTCATCGCTGCCAGTGTCTTGACCTCTTTCTGCC
TCGCGGCATATTTCCAATACCACGGGTGGATCGCCGTTGCAGAGAGAGGG
AGGAGGGGGGTGGGGGAGAGGGTGTGGGGGGCCACGTTGTTGAGTGCGGC
GGCGGAGACATTACCGGTTCCGGAGGGGTGGGATAATGTGGTAGTGTTTG
TTGCGGTCGTGCTGGCGGATTGGCTGGTTATGAGGGGGAGGGGGGAGGGG
TTGTAGATGCCGACCTTCTCCCTGGCCCCCGCCGCCGCCAGCACTCCCAC
TCCCACCACCGCCTCGTCCTTCTTCACGGCCAAGACCCTCGCCAACCCCC
ATGCACACGATACCCGCGCCCTCCTCCTCACGTCCCTGGCCATGGTCTCC
TACTCGGAAGGCGTCAAACTCCTCGCCGCCCGCAAGATCTGTGCCTCCAC
AACCGCACGCAAGTTCATGCACGTCGGTTGTGGCCCCATCTTTCTGCTAT
GCTGGCCTCTCTTTTCCCAGTCGTCACATGCCTCCTCCTTTGCCATGGTG
GCGCCCTTGGCCTTGACGTCTTTCTTCACACTTGTCGGCCTGGGAATAGC
ACAAAATCAGGCGACCGTGCAAAGCATGAGCAGGACCGGCGCCCGGCAGG
AGTTGTTGCGCGGGCCTTTCTTGTATGGAAGCGTCATGATCGTTGCTACG
CTGGTGTACTGGCGGCACCTGACTGCCGCCCTGTGTATTTCGTGCCTGTG
TGCGGGCGACGGCTTCGCGGACTTGATTGGTCGTCGGT
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Synonyms
Publications