jgi.p|Nanoce1779_2|597449, mRNA_6600 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597449
Unique Name	mRNA_6600
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1847
Alignment location	scaffold_18:236976..238822 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597535
Track	FilteredModels2
ProteinId	597449

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:236976..238822 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597449	gene_6600	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597449	mRNA_6600-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6600	CDS_6600	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:236976..238822+
coding sequence from alignment at scaffold_18:236976..238822+

mRNA sequence

>mRNA_6600 ID=mRNA_6600|Name=jgi.p|Nanoce1779_2|597449|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp
ACAGAGCCGTTGCATGCCTCCACACTCCCCACCTCGATCCCCACCTCCGC
CGTGCTCAACCATCTCCGCATTTCTTCGTTCCTTCGATATCGATCCCGTC
CACGGCTTTTTGCCATCCTCATGGCCTCTGCCTCGCCTCCCTTACCTAGC
CTTTCAGGCGCATGAAGACCTGGCCGCGGTCTTGCCTCAGCTCCTAGTCT
CTTCCACAGCTCGCGCCGCCATCGAGGCCCTCCCTTTAGTAAAGTCGACT
TCCACACGAAACCTCTTCAACAACAATGAGCCTGCACAACGCCGAGCATT
GCTACTTTTTGGTGGACTTGCCTCGGCGTACGTCTGGGGTGGTGGCACCG
ACGTGACCCCACGTGATTACCTGCCTGCTTGCATCGCCGTACCTTTGTAC
GAGGTGGCGCGTATGTTGGAGACTTGCCCAATATTGAGCCATCAAAGCAA
CTGTTTGTATAACTGGAAGAAAGGAGCCTCTGAAAAGGCGAAGGAGAAGG
GGGGAAATGTGAACCGCATGCACAATGGCGACGAGGATGCTTGCAGTGAC
AGCGACAACCCTTCAAATCCGCTACAAGCCCAAAACTTGGCATTGACCTT
CTCATTTACGGGTGACGACAACGAACGGATGTTTTATCTGCTCAGTCTTG
AAATTGAGGTGGTAGGTGCTCGTGCGTTACCCTTATTGGAGACGGCCCGT
CGTGCCGCCCATCATCTGCTTAAAGCTTCTTTTCCTTGTTCATGGAAGGG
GGATGAGGGGGAAGAAAATGGGATGAAAACAGAGCAGCATCAACAGCAGC
AGCAGCAGCAGCATCAACAAGAAGTGTACCTGCAGCAGGAATCGCGAGAA
GTAGAGGAAAAGGCCATCATCGACGCCTTAATTCAGGTCCGTGCCTGTAT
CAGGGCATGCCAATCAATCCTTCTTTCCATGCCTCGTCATGTGGACCCGG
TATTCTTTTTCCATCGGATCCGACCTTATTTGTCAGGATGGAGAAATAAT
CCGAGCGTGCCTCAAGGGATAATATATCGAGGTGTGGTGGTGGGAGAGGG
AGAGGGAGGAGGAGAGGTAGGTGGAGGACGAGGACAGGGACGAGGACGCG
GACGAGAAGATGCCGGTCAAAGCAGTAATGAGAACGAGCATCAGCAAGAG
GGAGACAATTATTCCGAACAAGAATTAGACGAAAGAGGTCCTCGCCTCTC
TTACTCCGGGGGTTCCGCTGCGCAAAGCTCCCTCCTTCCATCCCTTGACC
TCTACCTTGGCGTGAATCACGATGAGGCGGGCACGCGTAGTCAGTCCTCC
TATCAATTCGTCAAAGCCATGCGGGCTTACATGCCGAAGGGACATCGTCG
CTTCCTCGAGGCGCTGGAAGAAGATGTCAAGATTGAGGATGAGGAGGAAG
GAAGGGAGAAAAGGATGAGCATTCGAAGGTATGTATTGTGGAGATGTGAA
GAATGTGAGGGTGGGAAGGAGGAGCGGAAGGAGGATGGGCTGCGGTTAGT
GAGGGCGTATGACGGATGTGTAGAAGCCTTGGTAGCTTTTCGCATGTCAC
ATTTAGGGATTGTTCGTCTATATATCACGCATCAGCAAGGAGGGAAGGGG
GGAAGGAAGACGGGTGGAGGAGGGTTGGAGGAAGCGGCGGGGGGCAAGGG
CACGGGAGGGCAGGCCCCGAAAGAGTTTCTTAAACCGTTGCGGGATCAGA
CAGCAGCAGCGCTGCTGGAGGGAAAGGTAAAAGGGGTGTAACATAGAACA
GGTGAAGAGAGATAGAGAGAGAAAGCGAACACATGTCTGAAAACTGTGAG
AGAAAAATTAACGTGTCTATATATTTATGCATAATTCAAGGAACCAG

protein sequence of jgi.p|Nanoce1779_2|597449

>mRNA_6600-protein ID=mRNA_6600-protein|Name=jgi.p|Nanoce1779_2|597449|organism=Nannochloropsis oceanica|type=polypeptide|length=576bp
MPPHSPPRSPPPPCSTISAFLRSFDIDPVHGFLPSSWPLPRLPYLAFQAH
EDLAAVLPQLLVSSTARAAIEALPLVKSTSTRNLFNNNEPAQRRALLLFG
GLASAYVWGGGTDVTPRDYLPACIAVPLYEVARMLETCPILSHQSNCLYN
WKKGASEKAKEKGGNVNRMHNGDEDACSDSDNPSNPLQAQNLALTFSFTG
DDNERMFYLLSLEIEVVGARALPLLETARRAAHHLLKASFPCSWKGDEGE
ENGMKTEQHQQQQQQQHQQEVYLQQESREVEEKAIIDALIQVRACIRACQ
SILLSMPRHVDPVFFFHRIRPYLSGWRNNPSVPQGIIYRGVVVGEGEGGG
EVGGGRGQGRGRGREDAGQSSNENEHQQEGDNYSEQELDERGPRLSYSGG
SAAQSSLLPSLDLYLGVNHDEAGTRSQSSYQFVKAMRAYMPKGHRRFLEA
LEEDVKIEDEEEGREKRMSIRRYVLWRCEECEGGKEERKEDGLRLVRAYD
GCVEALVAFRMSHLGIVRLYITHQQGGKGGRKTGGGGLEEAAGGKGTGGQ
APKEFLKPLRDQTAAALLEGKVKGV*

mRNA from alignment at scaffold_18:236976..238822+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6600 ID=mRNA_6600|Name=jgi.p|Nanoce1779_2|597449|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp|location=Sequence derived from alignment at scaffold_18:236976..238822+ (Nannochloropsis oceanica)
ACAGAGCCGTTGCATGCCTCCACACTCCCCACCTCGATCCCCACCTCCGC
CGTGCTCAACCATCTCCGCATTTCTTCGTTCCTTCGATATCGATCCCGTC
CACGGCTTTTTGCCATCCTCATGGCCTCTGCCTCGCCTCCCTTACCTAGC
CTTTCAGGCGCATGAAGACCTGGCCGCGGTCTTGCCTCAGCTCCTAGTCT
CTTCCACAGCTCGCGCCGCCATCGAGGCCCTCCCTTTAGTAAAGTCGACT
TCCACACGAAACCTCTTCAACAACAATGAGCCTGCACAACGCCGAGCATT
GCTACTTTTTGGTGGACTTGCCTCGGCGTACGTCTGGGGTGGTGGCACCG
ACGTGACCCCACGTGATTACCTGCCTGCTTGCATCGCCGTACCTTTGTAC
GAGGTGGCGCGTATGTTGGAGACTTGCCCAATATTGAGCCATCAAAGCAA
CTGTTTGTATAACTGGAAGAAAGGAGCCTCTGAAAAGGCGAAGGAGAAGG
GGGGAAATGTGAACCGCATGCACAATGGCGACGAGGATGCTTGCAGTGAC
AGCGACAACCCTTCAAATCCGCTACAAGCCCAAAACTTGGCATTGACCTT
CTCATTTACGGGTGACGACAACGAACGGATGTTTTATCTGCTCAGTCTTG
AAATTGAGGTGGTAGGTGCTCGTGCGTTACCCTTATTGGAGACGGCCCGT
CGTGCCGCCCATCATCTGCTTAAAGCTTCTTTTCCTTGTTCATGGAAGGG
GGATGAGGGGGAAGAAAATGGGATGAAAACAGAGCAGCATCAACAGCAGC
AGCAGCAGCAGCATCAACAAGAAGTGTACCTGCAGCAGGAATCGCGAGAA
GTAGAGGAAAAGGCCATCATCGACGCCTTAATTCAGGTCCGTGCCTGTAT
CAGGGCATGCCAATCAATCCTTCTTTCCATGCCTCGTCATGTGGACCCGG
TATTCTTTTTCCATCGGATCCGACCTTATTTGTCAGGATGGAGAAATAAT
CCGAGCGTGCCTCAAGGGATAATATATCGAGGTGTGGTGGTGGGAGAGGG
AGAGGGAGGAGGAGAGGTAGGTGGAGGACGAGGACAGGGACGAGGACGCG
GACGAGAAGATGCCGGTCAAAGCAGTAATGAGAACGAGCATCAGCAAGAG
GGAGACAATTATTCCGAACAAGAATTAGACGAAAGAGGTCCTCGCCTCTC
TTACTCCGGGGGTTCCGCTGCGCAAAGCTCCCTCCTTCCATCCCTTGACC
TCTACCTTGGCGTGAATCACGATGAGGCGGGCACGCGTAGTCAGTCCTCC
TATCAATTCGTCAAAGCCATGCGGGCTTACATGCCGAAGGGACATCGTCG
CTTCCTCGAGGCGCTGGAAGAAGATGTCAAGATTGAGGATGAGGAGGAAG
GAAGGGAGAAAAGGATGAGCATTCGAAGGTATGTATTGTGGAGATGTGAA
GAATGTGAGGGTGGGAAGGAGGAGCGGAAGGAGGATGGGCTGCGGTTAGT
GAGGGCGTATGACGGATGTGTAGAAGCCTTGGTAGCTTTTCGCATGTCAC
ATTTAGGGATTGTTCGTCTATATATCACGCATCAGCAAGGAGGGAAGGGG
GGAAGGAAGACGGGTGGAGGAGGGTTGGAGGAAGCGGCGGGGGGCAAGGG
CACGGGAGGGCAGGCCCCGAAAGAGTTTCTTAAACCGTTGCGGGATCAGA
CAGCAGCAGCGCTGCTGGAGGGAAAGGTAAAAGGGGTGTAACATAGAACA
GGTGAAGAGAGATAGAGAGAGAAAGCGAACACATGTCTGAAAACTGTGAG
AGAAAAATTAACGTGTCTATATATTTATGCATAATTCAAGGAACCAG

Coding sequence (CDS) from alignment at scaffold_18:236976..238822+

>mRNA_6600 ID=mRNA_6600|Name=jgi.p|Nanoce1779_2|597449|organism=Nannochloropsis oceanica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_18:236976..238822+ (Nannochloropsis oceanica)
ATGCCTCCACACTCCCCACCTCGATCCCCACCTCCGCCGTGCTCAACCAT
CTCCGCATTTCTTCGTTCCTTCGATATCGATCCCGTCCACGGCTTTTTGC
CATCCTCATGGCCTCTGCCTCGCCTCCCTTACCTAGCCTTTCAGGCGCAT
GAAGACCTGGCCGCGGTCTTGCCTCAGCTCCTAGTCTCTTCCACAGCTCG
CGCCGCCATCGAGGCCCTCCCTTTAGTAAAGTCGACTTCCACACGAAACC
TCTTCAACAACAATGAGCCTGCACAACGCCGAGCATTGCTACTTTTTGGT
GGACTTGCCTCGGCGTACGTCTGGGGTGGTGGCACCGACGTGACCCCACG
TGATTACCTGCCTGCTTGCATCGCCGTACCTTTGTACGAGGTGGCGCGTA
TGTTGGAGACTTGCCCAATATTGAGCCATCAAAGCAACTGTTTGTATAAC
TGGAAGAAAGGAGCCTCTGAAAAGGCGAAGGAGAAGGGGGGAAATGTGAA
CCGCATGCACAATGGCGACGAGGATGCTTGCAGTGACAGCGACAACCCTT
CAAATCCGCTACAAGCCCAAAACTTGGCATTGACCTTCTCATTTACGGGT
GACGACAACGAACGGATGTTTTATCTGCTCAGTCTTGAAATTGAGGTGGT
AGGTGCTCGTGCGTTACCCTTATTGGAGACGGCCCGTCGTGCCGCCCATC
ATCTGCTTAAAGCTTCTTTTCCTTGTTCATGGAAGGGGGATGAGGGGGAA
GAAAATGGGATGAAAACAGAGCAGCATCAACAGCAGCAGCAGCAGCAGCA
TCAACAAGAAGTGTACCTGCAGCAGGAATCGCGAGAAGTAGAGGAAAAGG
CCATCATCGACGCCTTAATTCAGGTCCGTGCCTGTATCAGGGCATGCCAA
TCAATCCTTCTTTCCATGCCTCGTCATGTGGACCCGGTATTCTTTTTCCA
TCGGATCCGACCTTATTTGTCAGGATGGAGAAATAATCCGAGCGTGCCTC
AAGGGATAATATATCGAGGTGTGGTGGTGGGAGAGGGAGAGGGAGGAGGA
GAGGTAGGTGGAGGACGAGGACAGGGACGAGGACGCGGACGAGAAGATGC
CGGTCAAAGCAGTAATGAGAACGAGCATCAGCAAGAGGGAGACAATTATT
CCGAACAAGAATTAGACGAAAGAGGTCCTCGCCTCTCTTACTCCGGGGGT
TCCGCTGCGCAAAGCTCCCTCCTTCCATCCCTTGACCTCTACCTTGGCGT
GAATCACGATGAGGCGGGCACGCGTAGTCAGTCCTCCTATCAATTCGTCA
AAGCCATGCGGGCTTACATGCCGAAGGGACATCGTCGCTTCCTCGAGGCG
CTGGAAGAAGATGTCAAGATTGAGGATGAGGAGGAAGGAAGGGAGAAAAG
GATGAGCATTCGAAGGTATGTATTGTGGAGATGTGAAGAATGTGAGGGTG
GGAAGGAGGAGCGGAAGGAGGATGGGCTGCGGTTAGTGAGGGCGTATGAC
GGATGTGTAGAAGCCTTGGTAGCTTTTCGCATGTCACATTTAGGGATTGT
TCGTCTATATATCACGCATCAGCAAGGAGGGAAGGGGGGAAGGAAGACGG
GTGGAGGAGGGTTGGAGGAAGCGGCGGGGGGCAAGGGCACGGGAGGGCAG
GCCCCGAAAGAGTTTCTTAAACCGTTGCGGGATCAGACAGCAGCAGCGCT
GCTGGAGGGAAAGGTAAAAGGGGTGTAA

Synonyms

Publications