jgi.p|Nanoce1779_2|575724, mRNA_1200 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575724
Unique NamemRNA_1200
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1020
Alignment locationscaffold_2:1483617..1484636 -

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Properties
Property NameValue
TranscriptId575810
TrackFilteredModels2
ProteinId575724
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1483617..1484636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575724gene_1200Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575724mRNA_1200-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1200CDS_1200Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1200 ID=mRNA_1200|Name=jgi.p|Nanoce1779_2|575724|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp
ATGAAGGAGGGAAGGGGAGGGAGAGGGGGAGGAAGGGCAACCGATGAGGA
ATATGAGGAAGAGAAGTTGGAGGATGGAGAAAGAGAAGATGAAGGGGCTT
TGCAGTCAAGACCATCACCATCGGAGCATCCATCCTCTTCTTCTTCGTCT
TCCAGCCTCCTCTCCTCCTCCCTTTCTTTCCCCCCTCCCCACAACCCCGC
ATTGCAAGAGCAAGACGTAAATCAAAGCAAAGGCAACGACTCTGAAAGTC
AAATAAATACACCCGCCCCCCACCACCGCATCCTCATCGAGCTCGGCTGC
GGGGTGGGAAACGCCGTCTTCCCTCTCCTCGAGAGAGACCCTGATCTCTT
CGTGTATGCCCTTGACTTCTCCCCCCGTGCCATCGCCCTTGTCAAGGCCC
ACCCGCTCTACAAGCAGACCAAACGCTGCCAAGCTATCGTCCACGATGCT
GTCCTCGACCCCTCCCTCCCACCCGCCCTCACCCTGAATGGAGGGCAGGC
TGACCTGTGTCTGTGCATGTACGCCCTCTCGGCTATGGCCCCCGGGAAAA
TAAAGAGTGTCGCGGTGAAAATAAGAGCCGCACTCAAGCCAGGGGGAAGG
GTGCTCATTCGCGATTACGGGAGGTGGGATGAAGCGCAGCTGAGGTTCAA
GAGGGGGCATCGGCTAGCGGAGAATTTTTATTTGCGCTCGGATGGAACGA
GGGCGTACTATTTCAGCGTGGAGGACTTAAGGGAAATGTTTGGAGTAGGG
GAGGGAGGGGAAGAGGGAGAGGAGGAAGGAGGGGGCTTTAAAGAAGTAGA
AGTGGGATATGTGAGGAGGCAGTATATCAACCGGGGGGATGCGGTGACGA
GGAGGAGGGTGTGGGTGCATGCACGGTTTGAGAAACCAGTAGAAAAGGGT
AAGGGTAAGGGAGAGGGAGCAGATGTGATTGAAATGAACGTATAGAAAGT
ACCCAAATGAAAGAATGAAAATTCGAAAAGTTAACAGAGTCTTGTTTGTT
TCTTTTGAGGGTGGGTCTTG
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protein sequence of jgi.p|Nanoce1779_2|575724

>mRNA_1200-protein ID=mRNA_1200-protein|Name=jgi.p|Nanoce1779_2|575724|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MKEGRGGRGGGRATDEEYEEEKLEDGEREDEGALQSRPSPSEHPSSSSSS
SSLLSSSLSFPPPHNPALQEQDVNQSKGNDSESQINTPAPHHRILIELGC
GVGNAVFPLLERDPDLFVYALDFSPRAIALVKAHPLYKQTKRCQAIVHDA
VLDPSLPPALTLNGGQADLCLCMYALSAMAPGKIKSVAVKIRAALKPGGR
VLIRDYGRWDEAQLRFKRGHRLAENFYLRSDGTRAYYFSVEDLREMFGVG
EGGEEGEEEGGGFKEVEVGYVRRQYINRGDAVTRRRVWVHARFEKPVEKG
KGKGEGADVIEMNV*
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mRNA from alignment at scaffold_2:1483617..1484636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1200 ID=mRNA_1200|Name=jgi.p|Nanoce1779_2|575724|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp|location=Sequence derived from alignment at scaffold_2:1483617..1484636- (Nannochloropsis oceanica)
ATGAAGGAGGGAAGGGGAGGGAGAGGGGGAGGAAGGGCAACCGATGAGGA
ATATGAGGAAGAGAAGTTGGAGGATGGAGAAAGAGAAGATGAAGGGGCTT
TGCAGTCAAGACCATCACCATCGGAGCATCCATCCTCTTCTTCTTCGTCT
TCCAGCCTCCTCTCCTCCTCCCTTTCTTTCCCCCCTCCCCACAACCCCGC
ATTGCAAGAGCAAGACGTAAATCAAAGCAAAGGCAACGACTCTGAAAGTC
AAATAAATACACCCGCCCCCCACCACCGCATCCTCATCGAGCTCGGCTGC
GGGGTGGGAAACGCCGTCTTCCCTCTCCTCGAGAGAGACCCTGATCTCTT
CGTGTATGCCCTTGACTTCTCCCCCCGTGCCATCGCCCTTGTCAAGGCCC
ACCCGCTCTACAAGCAGACCAAACGCTGCCAAGCTATCGTCCACGATGCT
GTCCTCGACCCCTCCCTCCCACCCGCCCTCACCCTGAATGGAGGGCAGGC
TGACCTGTGTCTGTGCATGTACGCCCTCTCGGCTATGGCCCCCGGGAAAA
TAAAGAGTGTCGCGGTGAAAATAAGAGCCGCACTCAAGCCAGGGGGAAGG
GTGCTCATTCGCGATTACGGGAGGTGGGATGAAGCGCAGCTGAGGTTCAA
GAGGGGGCATCGGCTAGCGGAGAATTTTTATTTGCGCTCGGATGGAACGA
GGGCGTACTATTTCAGCGTGGAGGACTTAAGGGAAATGTTTGGAGTAGGG
GAGGGAGGGGAAGAGGGAGAGGAGGAAGGAGGGGGCTTTAAAGAAGTAGA
AGTGGGATATGTGAGGAGGCAGTATATCAACCGGGGGGATGCGGTGACGA
GGAGGAGGGTGTGGGTGCATGCACGGTTTGAGAAACCAGTAGAAAAGGGT
AAGGGTAAGGGAGAGGGAGCAGATGTGATTGAAATGAACGTATAGAAAGT
ACCCAAATGAAAGAATGAAAATTCGAAAAGTTAACAGAGTCTTGTTTGTT
TCTTTTGAGGGTGGGTCTTG
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Coding sequence (CDS) from alignment at scaffold_2:1483617..1484636-

>mRNA_1200 ID=mRNA_1200|Name=jgi.p|Nanoce1779_2|575724|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_2:1483617..1484636- (Nannochloropsis oceanica)
ATGAAGGAGGGAAGGGGAGGGAGAGGGGGAGGAAGGGCAACCGATGAGGA
ATATGAGGAAGAGAAGTTGGAGGATGGAGAAAGAGAAGATGAAGGGGCTT
TGCAGTCAAGACCATCACCATCGGAGCATCCATCCTCTTCTTCTTCGTCT
TCCAGCCTCCTCTCCTCCTCCCTTTCTTTCCCCCCTCCCCACAACCCCGC
ATTGCAAGAGCAAGACGTAAATCAAAGCAAAGGCAACGACTCTGAAAGTC
AAATAAATACACCCGCCCCCCACCACCGCATCCTCATCGAGCTCGGCTGC
GGGGTGGGAAACGCCGTCTTCCCTCTCCTCGAGAGAGACCCTGATCTCTT
CGTGTATGCCCTTGACTTCTCCCCCCGTGCCATCGCCCTTGTCAAGGCCC
ACCCGCTCTACAAGCAGACCAAACGCTGCCAAGCTATCGTCCACGATGCT
GTCCTCGACCCCTCCCTCCCACCCGCCCTCACCCTGAATGGAGGGCAGGC
TGACCTGTGTCTGTGCATGTACGCCCTCTCGGCTATGGCCCCCGGGAAAA
TAAAGAGTGTCGCGGTGAAAATAAGAGCCGCACTCAAGCCAGGGGGAAGG
GTGCTCATTCGCGATTACGGGAGGTGGGATGAAGCGCAGCTGAGGTTCAA
GAGGGGGCATCGGCTAGCGGAGAATTTTTATTTGCGCTCGGATGGAACGA
GGGCGTACTATTTCAGCGTGGAGGACTTAAGGGAAATGTTTGGAGTAGGG
GAGGGAGGGGAAGAGGGAGAGGAGGAAGGAGGGGGCTTTAAAGAAGTAGA
AGTGGGATATGTGAGGAGGCAGTATATCAACCGGGGGGATGCGGTGACGA
GGAGGAGGGTGTGGGTGCATGCACGGTTTGAGAAACCAGTAGAAAAGGGT
AAGGGTAAGGGAGAGGGAGCAGATGTGATTGAAATGAACGTATAG
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Synonyms
Publications