jgi.p|Nanoce1779_2|177367, mRNA_7936 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|177367
Unique NamemRNA_7936
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2211
Alignment locationscaffold_22:213188..215398 -

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Properties
Property NameValue
TranscriptId177453
TrackFilteredModels2
ProteinId177367
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:213188..215398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|177367gene_7936Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|177367mRNA_7936-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7936CDS_7936Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7936 ID=mRNA_7936|Name=jgi.p|Nanoce1779_2|177367|organism=Nannochloropsis oceanica|type=mRNA|length=2211bp
CAACTGAGTCGCCGAAACCATGCGGAAAAGCAACGAGTACCGCTGTCATG
TATATTATATGAAATTTGTACTGGCTAGGCACAAATTACGCACACATTAA
CACAGGTGCTAGTGCCATGATGCGAGCCCAAATCGCCCGAGAAAGCGGCG
GGGCATCGTCGTACCTTGGCATTCATCGCCTCGCCCACCTCCCGCCCAGT
AGCAACAAAGACCTGCTCTACGACACCACTGCCTACATAAACCACCTCGA
GACACAACTGAAGAGGGTCACGGCCGCGTGCGAGCAGGCCTCAGACCTGA
AGGAGGAAAATCAGGCCGTGCGGGAATTGGTGGAGGAGGTGTCGGCGCGC
GTGAATGCCTACGGTGCCAACAGGCACGACACTGAAAGCCGCTTGCACGC
TGTCGAGACGTTGGGGGATCGTTTGACAAATCTTGAGGTCGAAGGCAGGC
TGCGGGATGAGCAACAGCAACAAGGGCGGAAGCAGCAAGAGGAATGGCAG
GAGCAGCAGCGGAGCCAGAACTGCACCACAGCGCTGTTGGAACGATTGAA
ATCGCTCGAGAGAGTGGTTGTCGAGTTCGAGATGCGAGAGGGAGAGGCAA
AGGATGAGCAGCAAAACGAGGTAGCGCGGCTGACAACACGATTAGATGAG
CTTGAAATGTGGTGTCAGGGATTGGAGACAGCACAGCTACAAGGATTTGC
GCGATTGCGAATCGAGGTGGAAGAAAGCATGGAGAGGTTTCGGCATGAAG
TCTCTATGGATCACCACCGTGCCCTCAGCGCGTGCACCAAGCAAGGCATC
TTGTTACAAGAGGAGCTGAGTAGGATGCAAAAGCAAATTGCAGAGCTGCA
GCGGAGGGAGGTGTTGCGAGAGGATTCAACATTTGTTTCGAGCCAGCAGG
AGATGGGAGGGGAGAGAGGAATAGGAGGAGGAGGAGCAGCAGCAGCAGCA
GAAGCAGCAGTGCCGACATCTTCATGGCAATACCTGGAAGGGGGCGGTGA
TAATAAGCCGACCACGACGATGGCGGATAAATTGGAAAAGAAACTTGCTG
CTCTTAACGCCGCATTTCGACACGCGGAGAAGGGGCACAACAAGAGCAGG
AAGGAGCATCAAGGTGCTATTACAAGGCTGCAGCAGACTCTAGCAATGGT
GGGAGAGAAGGCGTTAGAGACGTCGGCGAGGCAAGCGGAAGCCGTGCTAG
GGGTAATGCGACAGCTAGAGGACCGGCTCGCAGGCTTGGAGACTGAGCAA
CAGCAGCGGAATCAGCGGAAACAGCGGCAACAGCAGCGGAAACAGCGGCA
ACAGCAGCGGCAACAACGGCAGCAGCGGCAGCAGCCGCTTGAGCAGCAGT
TTCATGAGGGAGGGCCCATGGAAGAGACGTGGATGACAGCCGAGGCGATG
GACATGATCTCGACTGAACGCTTCAAGGACATGGCTGAGGAAAGAGGGGA
GGAGGACAAGAAGGAGGAGGAAGAGCAGGAAGAGGAGGAAGAGGAGGAAG
GGGTCATAACTGCTGCTTGGCAACACATACAGGAGCAGCAGCGGCTACAG
AAGGAGGAGGAGGAGCGCGAGATTGAAGAAGAGCTGATGCGGGCCACTAG
TGCAGTCTTGGCGACAGGAGCGATGATTGGTGCTGGTGGTGGATGCAAGG
GGAAGATGGAGGAAAATACAAAAGTACAAGGGGCTCGAGAGAAGGTTGTT
GGCGAAAGAGGAAAGCATCGCAACCGCGCCGATTTTTCTGCAGCCCTTCA
TCATCAAGCACTTTCTATCGAATCAACAGCACGCAGCAAGCTGAAGGGTC
TCTCGCGGCGGCAGGGGAAAAGTTCGGCGGCATTGAGTGGCTCGGCTGGG
TTGCAAGAAGGCATCATTCCCAATGTAGCGGTCAAAAAAAAGGCATTGAC
TCCTCACCTACCTATTAGTCCCCCTTCTCCTTCTGCTTCCTTCTCTTCGT
CCTCGCCTTCTTCCCCTCTCCGTCGCCATCAACGAAGAAATGAAGTGGCG
AGGTGTTCGATGGAGCAGCAGCAGCAACAACAGCACCAGCAAATGCAAAA
GAACAGAGATAATAAAAGGATGCCTGGTTTGTTGAAGCGAGGGCGTCATG
TCATCATCTGAATCCAGGCGAACGGAAAGCAAAGAGAAGATAAGGCTGGT
GTACATATCTATCTAACTTGTATAAACAAGTGCAGAGGAAAAACATGAAA
TATAATGGTGA
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protein sequence of jgi.p|Nanoce1779_2|177367

>mRNA_7936-protein ID=mRNA_7936-protein|Name=jgi.p|Nanoce1779_2|177367|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MMRAQIARESGGASSYLGIHRLAHLPPSSNKDLLYDTTAYINHLETQLKR
VTAACEQASDLKEENQAVRELVEEVSARVNAYGANRHDTESRLHAVETLG
DRLTNLEVEGRLRDEQQQQGRKQQEEWQEQQRSQNCTTALLERLKSLERV
VVEFEMREGEAKDEQQNEVARLTTRLDELEMWCQGLETAQLQGFARLRIE
VEESMERFRHEVSMDHHRALSACTKQGILLQEELSRMQKQIAELQRREVL
REDSTFVSSQQEMGGERGIGGGGAAAAAEAAVPTSSWQYLEGGGDNKPTT
TMADKLEKKLAALNAAFRHAEKGHNKSRKEHQGAITRLQQTLAMVGEKAL
ETSARQAEAVLGVMRQLEDRLAGLETEQQQRNQRKQRQQQRKQRQQQRQQ
RQQRQQPLEQQFHEGGPMEETWMTAEAMDMISTERFKDMAEERGEEDKKE
EEEQEEEEEEEGVITAAWQHIQEQQRLQKEEEEREIEEELMRATSAVLAT
GAMIGAGGGCKGKMEENTKVQGAREKVVGERGKHRNRADFSAALHHQALS
IESTARSKLKGLSRRQGKSSAALSGSAGLQEGIIPNVAVKKKALTPHLPI
SPPSPSASFSSSSPSSPLRRHQRRNEVARCSMEQQQQQQHQQMQKNRDNK
RMPGLLKRGRHVII*
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mRNA from alignment at scaffold_22:213188..215398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7936 ID=mRNA_7936|Name=jgi.p|Nanoce1779_2|177367|organism=Nannochloropsis oceanica|type=mRNA|length=2211bp|location=Sequence derived from alignment at scaffold_22:213188..215398- (Nannochloropsis oceanica)
CAACTGAGTCGCCGAAACCATGCGGAAAAGCAACGAGTACCGCTGTCATG
TATATTATATGAAATTTGTACTGGCTAGGCACAAATTACGCACACATTAA
CACAGGTGCTAGTGCCATGATGCGAGCCCAAATCGCCCGAGAAAGCGGCG
GGGCATCGTCGTACCTTGGCATTCATCGCCTCGCCCACCTCCCGCCCAGT
AGCAACAAAGACCTGCTCTACGACACCACTGCCTACATAAACCACCTCGA
GACACAACTGAAGAGGGTCACGGCCGCGTGCGAGCAGGCCTCAGACCTGA
AGGAGGAAAATCAGGCCGTGCGGGAATTGGTGGAGGAGGTGTCGGCGCGC
GTGAATGCCTACGGTGCCAACAGGCACGACACTGAAAGCCGCTTGCACGC
TGTCGAGACGTTGGGGGATCGTTTGACAAATCTTGAGGTCGAAGGCAGGC
TGCGGGATGAGCAACAGCAACAAGGGCGGAAGCAGCAAGAGGAATGGCAG
GAGCAGCAGCGGAGCCAGAACTGCACCACAGCGCTGTTGGAACGATTGAA
ATCGCTCGAGAGAGTGGTTGTCGAGTTCGAGATGCGAGAGGGAGAGGCAA
AGGATGAGCAGCAAAACGAGGTAGCGCGGCTGACAACACGATTAGATGAG
CTTGAAATGTGGTGTCAGGGATTGGAGACAGCACAGCTACAAGGATTTGC
GCGATTGCGAATCGAGGTGGAAGAAAGCATGGAGAGGTTTCGGCATGAAG
TCTCTATGGATCACCACCGTGCCCTCAGCGCGTGCACCAAGCAAGGCATC
TTGTTACAAGAGGAGCTGAGTAGGATGCAAAAGCAAATTGCAGAGCTGCA
GCGGAGGGAGGTGTTGCGAGAGGATTCAACATTTGTTTCGAGCCAGCAGG
AGATGGGAGGGGAGAGAGGAATAGGAGGAGGAGGAGCAGCAGCAGCAGCA
GAAGCAGCAGTGCCGACATCTTCATGGCAATACCTGGAAGGGGGCGGTGA
TAATAAGCCGACCACGACGATGGCGGATAAATTGGAAAAGAAACTTGCTG
CTCTTAACGCCGCATTTCGACACGCGGAGAAGGGGCACAACAAGAGCAGG
AAGGAGCATCAAGGTGCTATTACAAGGCTGCAGCAGACTCTAGCAATGGT
GGGAGAGAAGGCGTTAGAGACGTCGGCGAGGCAAGCGGAAGCCGTGCTAG
GGGTAATGCGACAGCTAGAGGACCGGCTCGCAGGCTTGGAGACTGAGCAA
CAGCAGCGGAATCAGCGGAAACAGCGGCAACAGCAGCGGAAACAGCGGCA
ACAGCAGCGGCAACAACGGCAGCAGCGGCAGCAGCCGCTTGAGCAGCAGT
TTCATGAGGGAGGGCCCATGGAAGAGACGTGGATGACAGCCGAGGCGATG
GACATGATCTCGACTGAACGCTTCAAGGACATGGCTGAGGAAAGAGGGGA
GGAGGACAAGAAGGAGGAGGAAGAGCAGGAAGAGGAGGAAGAGGAGGAAG
GGGTCATAACTGCTGCTTGGCAACACATACAGGAGCAGCAGCGGCTACAG
AAGGAGGAGGAGGAGCGCGAGATTGAAGAAGAGCTGATGCGGGCCACTAG
TGCAGTCTTGGCGACAGGAGCGATGATTGGTGCTGGTGGTGGATGCAAGG
GGAAGATGGAGGAAAATACAAAAGTACAAGGGGCTCGAGAGAAGGTTGTT
GGCGAAAGAGGAAAGCATCGCAACCGCGCCGATTTTTCTGCAGCCCTTCA
TCATCAAGCACTTTCTATCGAATCAACAGCACGCAGCAAGCTGAAGGGTC
TCTCGCGGCGGCAGGGGAAAAGTTCGGCGGCATTGAGTGGCTCGGCTGGG
TTGCAAGAAGGCATCATTCCCAATGTAGCGGTCAAAAAAAAGGCATTGAC
TCCTCACCTACCTATTAGTCCCCCTTCTCCTTCTGCTTCCTTCTCTTCGT
CCTCGCCTTCTTCCCCTCTCCGTCGCCATCAACGAAGAAATGAAGTGGCG
AGGTGTTCGATGGAGCAGCAGCAGCAACAACAGCACCAGCAAATGCAAAA
GAACAGAGATAATAAAAGGATGCCTGGTTTGTTGAAGCGAGGGCGTCATG
TCATCATCTGAATCCAGGCGAACGGAAAGCAAAGAGAAGATAAGGCTGGT
GTACATATCTATCTAACTTGTATAAACAAGTGCAGAGGAAAAACATGAAA
TATAATGGTGA
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Coding sequence (CDS) from alignment at scaffold_22:213188..215398-

>mRNA_7936 ID=mRNA_7936|Name=jgi.p|Nanoce1779_2|177367|organism=Nannochloropsis oceanica|type=CDS|length=1995bp|location=Sequence derived from alignment at scaffold_22:213188..215398- (Nannochloropsis oceanica)
ATGATGCGAGCCCAAATCGCCCGAGAAAGCGGCGGGGCATCGTCGTACCT
TGGCATTCATCGCCTCGCCCACCTCCCGCCCAGTAGCAACAAAGACCTGC
TCTACGACACCACTGCCTACATAAACCACCTCGAGACACAACTGAAGAGG
GTCACGGCCGCGTGCGAGCAGGCCTCAGACCTGAAGGAGGAAAATCAGGC
CGTGCGGGAATTGGTGGAGGAGGTGTCGGCGCGCGTGAATGCCTACGGTG
CCAACAGGCACGACACTGAAAGCCGCTTGCACGCTGTCGAGACGTTGGGG
GATCGTTTGACAAATCTTGAGGTCGAAGGCAGGCTGCGGGATGAGCAACA
GCAACAAGGGCGGAAGCAGCAAGAGGAATGGCAGGAGCAGCAGCGGAGCC
AGAACTGCACCACAGCGCTGTTGGAACGATTGAAATCGCTCGAGAGAGTG
GTTGTCGAGTTCGAGATGCGAGAGGGAGAGGCAAAGGATGAGCAGCAAAA
CGAGGTAGCGCGGCTGACAACACGATTAGATGAGCTTGAAATGTGGTGTC
AGGGATTGGAGACAGCACAGCTACAAGGATTTGCGCGATTGCGAATCGAG
GTGGAAGAAAGCATGGAGAGGTTTCGGCATGAAGTCTCTATGGATCACCA
CCGTGCCCTCAGCGCGTGCACCAAGCAAGGCATCTTGTTACAAGAGGAGC
TGAGTAGGATGCAAAAGCAAATTGCAGAGCTGCAGCGGAGGGAGGTGTTG
CGAGAGGATTCAACATTTGTTTCGAGCCAGCAGGAGATGGGAGGGGAGAG
AGGAATAGGAGGAGGAGGAGCAGCAGCAGCAGCAGAAGCAGCAGTGCCGA
CATCTTCATGGCAATACCTGGAAGGGGGCGGTGATAATAAGCCGACCACG
ACGATGGCGGATAAATTGGAAAAGAAACTTGCTGCTCTTAACGCCGCATT
TCGACACGCGGAGAAGGGGCACAACAAGAGCAGGAAGGAGCATCAAGGTG
CTATTACAAGGCTGCAGCAGACTCTAGCAATGGTGGGAGAGAAGGCGTTA
GAGACGTCGGCGAGGCAAGCGGAAGCCGTGCTAGGGGTAATGCGACAGCT
AGAGGACCGGCTCGCAGGCTTGGAGACTGAGCAACAGCAGCGGAATCAGC
GGAAACAGCGGCAACAGCAGCGGAAACAGCGGCAACAGCAGCGGCAACAA
CGGCAGCAGCGGCAGCAGCCGCTTGAGCAGCAGTTTCATGAGGGAGGGCC
CATGGAAGAGACGTGGATGACAGCCGAGGCGATGGACATGATCTCGACTG
AACGCTTCAAGGACATGGCTGAGGAAAGAGGGGAGGAGGACAAGAAGGAG
GAGGAAGAGCAGGAAGAGGAGGAAGAGGAGGAAGGGGTCATAACTGCTGC
TTGGCAACACATACAGGAGCAGCAGCGGCTACAGAAGGAGGAGGAGGAGC
GCGAGATTGAAGAAGAGCTGATGCGGGCCACTAGTGCAGTCTTGGCGACA
GGAGCGATGATTGGTGCTGGTGGTGGATGCAAGGGGAAGATGGAGGAAAA
TACAAAAGTACAAGGGGCTCGAGAGAAGGTTGTTGGCGAAAGAGGAAAGC
ATCGCAACCGCGCCGATTTTTCTGCAGCCCTTCATCATCAAGCACTTTCT
ATCGAATCAACAGCACGCAGCAAGCTGAAGGGTCTCTCGCGGCGGCAGGG
GAAAAGTTCGGCGGCATTGAGTGGCTCGGCTGGGTTGCAAGAAGGCATCA
TTCCCAATGTAGCGGTCAAAAAAAAGGCATTGACTCCTCACCTACCTATT
AGTCCCCCTTCTCCTTCTGCTTCCTTCTCTTCGTCCTCGCCTTCTTCCCC
TCTCCGTCGCCATCAACGAAGAAATGAAGTGGCGAGGTGTTCGATGGAGC
AGCAGCAGCAACAACAGCACCAGCAAATGCAAAAGAACAGAGATAATAAA
AGGATGCCTGGTTTGTTGAAGCGAGGGCGTCATGTCATCATCTGA
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Synonyms
Publications