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Properties
Property Name | Value |
TranscriptId | 600427 |
Track | FilteredModels2 |
ProteinId | 600341 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_22 | supercontig | scaffold_22:48767..50524 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7876 ID=mRNA_7876|Name=jgi.p|Nanoce1779_2|600341|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp ATGAAGGAGGAGGGATGTAAGGCCTTATGCGAGGCGTTGAAACGACACGG GGAAGCAGGAAGGGAGGGAAGGAGCGAGGGAGGGAGTAGATTGAGACGGT TGGGGTTGGGAGGACACTTGATAGGCGTAGAGGGTGTGAGGATGGTAGTG GAGGTACTGAAGGAGGGAGGGATGCCGCGGTTGGAAGAGCTGGATCTAAC GGGGAATGGATTAGGGGACGAAGGGGCAGTGGTGGTGGCAGAATGGCTGT GGGAGGGAGGGAAGGAGGAGTGTGCTCGGGTGGATAAGGAGAAAGGAGAG AGGAGGGGGGACACGTCTGGTTTTCCTTCTTCCCTGATTCCTTACTCCTC CGGTCCCTCCCTCAAACGGCTCTTCCTTGGTCACAACAACATATATGGCC ATCTCTTCCATTCCCATCACCTTTTCTGTCACCCCCTCCCTCCCTCGCAT CCTCCCTCCTGCTCCTCTCTCATCGATCTCAACCTTGAAGGTAACTTCCT CTCCTCGTCCTACTCATCCTCATCCTTCGTCTCCTCCGACGAGGAAGGAG GGTTAGAGGGCAGGGAGTGTCAGTCTTCCGTCTCCTCCTTTCCCTCCACC TCTTCCTCCTTCTCCTCCTCCTATTGTGACGAGAAGGAAGGATGGATTGA ACAAGGTTATGATCTGAACCCCTGCCTGCGAGCCTTCATCGGTCCCTTCC TTCGGCATCTCTCCCTCGCGTACAACCCTGCTGTTGCTGCAACCGCAACA GCAGCAGCAGCGCTTGGCCGCCTTCTGAACGATTATCCCCTTCTTGAAAG CGCCAATGTCACTGGATGTGGACGAGGGGAAGAAGGGAAGGAAGGAGGGA TGGAGGTCGGGGTGATGCTGGAGGAGATCAAGAGGCCTTTGGCACTGACA GCACTGTTGGCGAGGGATTGCGGGTTGTCCCCGCCCTCACTCGCTTCCCT GCTCTCGCCCGGGAGTAGTGCCAAGTTCCCTAGGCTTGCGACGTTGGAGG TTGATGGGGAGGGAGAGAAGGTGTGTTCAGAGATGCTGTCTGTGCTGCTG GAGTGTTTGGAGGGAGGGAAGGAGGAAGGGAGGAGTAGGGCGTTGCCGGG GCTGACAGCATTGACTTTCCCTTGTTTGAATGTGGGAGATGAGGAGGCTT GGAGGCAAAGCGAGAAAGCAAGGAAAATTGAGAGGGCAAGACCCTGGTTG AAAGCCTTCATATCTTGGCCGGTCGAGGAGAGAGTCGGGAAGGAAGAGGA GGAAGGAGACAGGGAGTAGAATATGATGGAGGAGTAGAAGAAGGAAGAGA AGGGGATGGGGGAAGATGAAAGTATGAGATCAGATATGGAAATGACTAGG CTGAGAGGGACGGAGAGATGCAGGAAAAGAGTCACCAAGAAATAAAAGTG ATGATGATTTTGTGGGATGAATTAGGTTGTGAAAAGTTATCTTTTTCACA CAGGGTTAGGGCATGTGGACATGGCGATGACGAGATAAATATAGGCCGTG GTGTCCTTCAGCTCCACATCCGTGGGGCATCATTTCCAGTTGCTACCACC AAAATGGCAGGAAATTGCAGGTAGAAATTGGTCCTTCTTGGACAAGGACA TGTGGTATTCAACACCCCCCCCCCAAATAGAGAAAGGAGAAGACATTATT GGAAAATCGTGTGCCTTGACTAGTAATAGTACGCTTTTTTGCTCGTCTTC CTTTAACCAATTGATTGAGTGATTGATTTTTTGATTCATTTGTGAGATCG TTTTTGAC back to topprotein sequence of jgi.p|Nanoce1779_2|600341 >mRNA_7876-protein ID=mRNA_7876-protein|Name=jgi.p|Nanoce1779_2|600341|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp MKEEGCKALCEALKRHGEAGREGRSEGGSRLRRLGLGGHLIGVEGVRMVV EVLKEGGMPRLEELDLTGNGLGDEGAVVVAEWLWEGGKEECARVDKEKGE RRGDTSGFPSSLIPYSSGPSLKRLFLGHNNIYGHLFHSHHLFCHPLPPSH PPSCSSLIDLNLEGNFLSSSYSSSSFVSSDEEGGLEGRECQSSVSSFPST SSSFSSSYCDEKEGWIEQGYDLNPCLRAFIGPFLRHLSLAYNPAVAATAT AAAALGRLLNDYPLLESANVTGCGRGEEGKEGGMEVGVMLEEIKRPLALT ALLARDCGLSPPSLASLLSPGSSAKFPRLATLEVDGEGEKVCSEMLSVLL ECLEGGKEEGRSRALPGLTALTFPCLNVGDEEAWRQSEKARKIERARPWL KAFISWPVEERVGKEEEEGDRE* back to topmRNA from alignment at scaffold_22:48767..50524- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7876 ID=mRNA_7876|Name=jgi.p|Nanoce1779_2|600341|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp|location=Sequence derived from alignment at scaffold_22:48767..50524- (Nannochloropsis oceanica) ATGAAGGAGGAGGGATGTAAGGCCTTATGCGAGGCGTTGAAACGACACGG
GGAAGCAGGAAGGGAGGGAAGGAGCGAGGGAGGGAGTAGATTGAGACGGT
TGGGGTTGGGAGGACACTTGATAGGCGTAGAGGGTGTGAGGATGGTAGTG
GAGGTACTGAAGGAGGGAGGGATGCCGCGGTTGGAAGAGCTGGATCTAAC
GGGGAATGGATTAGGGGACGAAGGGGCAGTGGTGGTGGCAGAATGGCTGT
GGGAGGGAGGGAAGGAGGAGTGTGCTCGGGTGGATAAGGAGAAAGGAGAG
AGGAGGGGGGACACGTCTGGTTTTCCTTCTTCCCTGATTCCTTACTCCTC
CGGTCCCTCCCTCAAACGGCTCTTCCTTGGTCACAACAACATATATGGCC
ATCTCTTCCATTCCCATCACCTTTTCTGTCACCCCCTCCCTCCCTCGCAT
CCTCCCTCCTGCTCCTCTCTCATCGATCTCAACCTTGAAGGTAACTTCCT
CTCCTCGTCCTACTCATCCTCATCCTTCGTCTCCTCCGACGAGGAAGGAG
GGTTAGAGGGCAGGGAGTGTCAGTCTTCCGTCTCCTCCTTTCCCTCCACC
TCTTCCTCCTTCTCCTCCTCCTATTGTGACGAGAAGGAAGGATGGATTGA
ACAAGGTTATGATCTGAACCCCTGCCTGCGAGCCTTCATCGGTCCCTTCC
TTCGGCATCTCTCCCTCGCGTACAACCCTGCTGTTGCTGCAACCGCAACA
GCAGCAGCAGCGCTTGGCCGCCTTCTGAACGATTATCCCCTTCTTGAAAG
CGCCAATGTCACTGGATGTGGACGAGGGGAAGAAGGGAAGGAAGGAGGGA
TGGAGGTCGGGGTGATGCTGGAGGAGATCAAGAGGCCTTTGGCACTGACA
GCACTGTTGGCGAGGGATTGCGGGTTGTCCCCGCCCTCACTCGCTTCCCT
GCTCTCGCCCGGGAGTAGTGCCAAGTTCCCTAGGCTTGCGACGTTGGAGG
TTGATGGGGAGGGAGAGAAGGTGTGTTCAGAGATGCTGTCTGTGCTGCTG
GAGTGTTTGGAGGGAGGGAAGGAGGAAGGGAGGAGTAGGGCGTTGCCGGG
GCTGACAGCATTGACTTTCCCTTGTTTGAATGTGGGAGATGAGGAGGCTT
GGAGGCAAAGCGAGAAAGCAAGGAAAATTGAGAGGGCAAGACCCTGGTTG
AAAGCCTTCATATCTTGGCCGGTCGAGGAGAGAGTCGGGAAGGAAGAGGA
GGAAGGAGACAGGGAGTAGAATATGATGGAGGAGTAGAAGAAGGAAGAGA
AGGGGATGGGGGAAGATGAAAGTATGAGATCAGATATGGAAATGACTAGG
CTGAGAGGGACGGAGAGATGCAGGAAAAGAGTCACCAAGAAATAAAAGTG
ATGATGATTTTGTGGGATGAATTAGGTTGTGAAAAGTTATCTTTTTCACA
CAGGGTTAGGGCATGTGGACATGGCGATGACGAGATAAATATAGGCCGTG
GTGTCCTTCAGCTCCACATCCGTGGGGCATCATTTCCAGTTGCTACCACC
AAAATGGCAGGAAATTGCAGGTAGAAATTGGTCCTTCTTGGACAAGGACA
TGTGGTATTCAACACCCCCCCCCCAAATAGAGAAAGGAGAAGACATTATT
GGAAAATCGTGTGCCTTGACTAGTAATAGTACGCTTTTTTGCTCGTCTTC
CTTTAACCAATTGATTGAGTGATTGATTTTTTGATTCATTTGTGAGATCG
TTTTTGAC back to topCoding sequence (CDS) from alignment at scaffold_22:48767..50524- >mRNA_7876 ID=mRNA_7876|Name=jgi.p|Nanoce1779_2|600341|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at scaffold_22:48767..50524- (Nannochloropsis oceanica) ATGAAGGAGGAGGGATGTAAGGCCTTATGCGAGGCGTTGAAACGACACGG GGAAGCAGGAAGGGAGGGAAGGAGCGAGGGAGGGAGTAGATTGAGACGGT TGGGGTTGGGAGGACACTTGATAGGCGTAGAGGGTGTGAGGATGGTAGTG GAGGTACTGAAGGAGGGAGGGATGCCGCGGTTGGAAGAGCTGGATCTAAC GGGGAATGGATTAGGGGACGAAGGGGCAGTGGTGGTGGCAGAATGGCTGT GGGAGGGAGGGAAGGAGGAGTGTGCTCGGGTGGATAAGGAGAAAGGAGAG AGGAGGGGGGACACGTCTGGTTTTCCTTCTTCCCTGATTCCTTACTCCTC CGGTCCCTCCCTCAAACGGCTCTTCCTTGGTCACAACAACATATATGGCC ATCTCTTCCATTCCCATCACCTTTTCTGTCACCCCCTCCCTCCCTCGCAT CCTCCCTCCTGCTCCTCTCTCATCGATCTCAACCTTGAAGGTAACTTCCT CTCCTCGTCCTACTCATCCTCATCCTTCGTCTCCTCCGACGAGGAAGGAG GGTTAGAGGGCAGGGAGTGTCAGTCTTCCGTCTCCTCCTTTCCCTCCACC TCTTCCTCCTTCTCCTCCTCCTATTGTGACGAGAAGGAAGGATGGATTGA ACAAGGTTATGATCTGAACCCCTGCCTGCGAGCCTTCATCGGTCCCTTCC TTCGGCATCTCTCCCTCGCGTACAACCCTGCTGTTGCTGCAACCGCAACA GCAGCAGCAGCGCTTGGCCGCCTTCTGAACGATTATCCCCTTCTTGAAAG CGCCAATGTCACTGGATGTGGACGAGGGGAAGAAGGGAAGGAAGGAGGGA TGGAGGTCGGGGTGATGCTGGAGGAGATCAAGAGGCCTTTGGCACTGACA GCACTGTTGGCGAGGGATTGCGGGTTGTCCCCGCCCTCACTCGCTTCCCT GCTCTCGCCCGGGAGTAGTGCCAAGTTCCCTAGGCTTGCGACGTTGGAGG TTGATGGGGAGGGAGAGAAGGTGTGTTCAGAGATGCTGTCTGTGCTGCTG GAGTGTTTGGAGGGAGGGAAGGAGGAAGGGAGGAGTAGGGCGTTGCCGGG GCTGACAGCATTGACTTTCCCTTGTTTGAATGTGGGAGATGAGGAGGCTT GGAGGCAAAGCGAGAAAGCAAGGAAAATTGAGAGGGCAAGACCCTGGTTG AAAGCCTTCATATCTTGGCCGGTCGAGGAGAGAGTCGGGAAGGAAGAGGA GGAAGGAGACAGGGAGTAG back to top
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