jgi.p|Nanoce1779_2|600682, mRNA_7955 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600682
Unique NamemRNA_7955
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length916
Alignment locationscaffold_22:263966..264881 -

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Properties
Property NameValue
TranscriptId600768
TrackFilteredModels2
ProteinId600682
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:263966..264881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600682gene_7955Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600682mRNA_7955-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7955CDS_7955Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7955 ID=mRNA_7955|Name=jgi.p|Nanoce1779_2|600682|organism=Nannochloropsis oceanica|type=mRNA|length=916bp
CTCGTGCATGAGCCAATGCACGCCCATGGCCCAGAGGCGGTTGATCACAT
TGTTTATGGTTGCCCCGCCCAAAAGTGCAGCCACGCGCACACCGTCCTGT
TGCCAGTCCCCGTGCGGCAGCAGCGGCTCGTACAGCACGGCATCGTAGGC
GTACCCGAAAACCAGCAGGGCCGGGGCCAGGAGCACGCCCACGTCAAAAA
AGAAGGACGGCGCGTGCTGCGCATACGTCCTCCAGCTGCTGCGCTGGTAC
TTGAGGCTATACTTGTCCCAACGGCCCGAGATGTCGTGAAAGGCGATGAA
AAGCACCATCAACAGGTGGCTCACCACCAGGGACACGCACACTACACCCG
AAAACCACACGGCGCGCTCCATCTCCGGCGAGGCCAGGAGCGTCGACACC
CATTCCCAAACTTTTTCCGCTCTTCTTCTTCCTTCCTCTCCTCCTTCATT
CCCTCTTTCTCCTGTCGCTTGACAGCCTCCGTCATAGGTCCCCAAGAGGA
GCTCGGAAAGGGGCAATGCATGTGGCCATTGCCGCAGCCATGCTGCACCC
ATATCCATGGGTGCGGGAAACCCCCCGACTGGGCAATCGGGGTCTCTTTC
ACCGCCAGGAGTCCACCTGTTGTATGTAGTAAGGGAGGGCAAATAGTGGG
AAGGGTGTGAGTGTGTGGTTAGCTGTAGCATATGGGCGGTGCGAGATGTC
CCATACGCCATAGCCAGATCCCAGGGAAGTAGTACTTCGCGGTTTTTAAT
ATGTATCGCAGTTGCCCTTGAATGGAAGACCTGTGGATAGCATTGATGGT
CATGAGGAGTCGTGCTGTAGTCCTTTAGGCCAGCGGCAGTCTGAACGGCG
AGGCTAATTAGGTGGTGTACCGTGATCGGGCGTGGCGTACGTGCTGAAAG
TATGTCGCTTCTTCGC
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protein sequence of jgi.p|Nanoce1779_2|600682

>mRNA_7955-protein ID=mRNA_7955-protein|Name=jgi.p|Nanoce1779_2|600682|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MHAHGPEAVDHIVYGCPAQKCSHAHTVLLPVPVRQQRLVQHGIVGVPENQ
QGRGQEHAHVKKEGRRVLRIRPPAAALVLEAILVPTARDVVKGDEKHHQQ
VAHHQGHAHYTRKPHGALHLRRGQERRHPFPNFFRSSSSFLSSFIPSFSC
RLTASVIGPQEELGKGQCMWPLPQPCCTHIHGCGKPPDWAIGVSFTARSP
PVVCSKGGQIVGRV*
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mRNA from alignment at scaffold_22:263966..264881-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7955 ID=mRNA_7955|Name=jgi.p|Nanoce1779_2|600682|organism=Nannochloropsis oceanica|type=mRNA|length=916bp|location=Sequence derived from alignment at scaffold_22:263966..264881- (Nannochloropsis oceanica)
CTCGTGCATGAGCCAATGCACGCCCATGGCCCAGAGGCGGTTGATCACAT
TGTTTATGGTTGCCCCGCCCAAAAGTGCAGCCACGCGCACACCGTCCTGT
TGCCAGTCCCCGTGCGGCAGCAGCGGCTCGTACAGCACGGCATCGTAGGC
GTACCCGAAAACCAGCAGGGCCGGGGCCAGGAGCACGCCCACGTCAAAAA
AGAAGGACGGCGCGTGCTGCGCATACGTCCTCCAGCTGCTGCGCTGGTAC
TTGAGGCTATACTTGTCCCAACGGCCCGAGATGTCGTGAAAGGCGATGAA
AAGCACCATCAACAGGTGGCTCACCACCAGGGACACGCACACTACACCCG
AAAACCACACGGCGCGCTCCATCTCCGGCGAGGCCAGGAGCGTCGACACC
CATTCCCAAACTTTTTCCGCTCTTCTTCTTCCTTCCTCTCCTCCTTCATT
CCCTCTTTCTCCTGTCGCTTGACAGCCTCCGTCATAGGTCCCCAAGAGGA
GCTCGGAAAGGGGCAATGCATGTGGCCATTGCCGCAGCCATGCTGCACCC
ATATCCATGGGTGCGGGAAACCCCCCGACTGGGCAATCGGGGTCTCTTTC
ACCGCCAGGAGTCCACCTGTTGTATGTAGTAAGGGAGGGCAAATAGTGGG
AAGGGTGTGAGTGTGTGGTTAGCTGTAGCATATGGGCGGTGCGAGATGTC
CCATACGCCATAGCCAGATCCCAGGGAAGTAGTACTTCGCGGTTTTTAAT
ATGTATCGCAGTTGCCCTTGAATGGAAGACCTGTGGATAGCATTGATGGT
CATGAGGAGTCGTGCTGTAGTCCTTTAGGCCAGCGGCAGTCTGAACGGCG
AGGCTAATTAGGTGGTGTACCGTGATCGGGCGTGGCGTACGTGCTGAAAG
TATGTCGCTTCTTCGC
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Coding sequence (CDS) from alignment at scaffold_22:263966..264881-

>mRNA_7955 ID=mRNA_7955|Name=jgi.p|Nanoce1779_2|600682|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_22:263966..264881- (Nannochloropsis oceanica)
ATGCACGCCCATGGCCCAGAGGCGGTTGATCACATTGTTTATGGTTGCCC
CGCCCAAAAGTGCAGCCACGCGCACACCGTCCTGTTGCCAGTCCCCGTGC
GGCAGCAGCGGCTCGTACAGCACGGCATCGTAGGCGTACCCGAAAACCAG
CAGGGCCGGGGCCAGGAGCACGCCCACGTCAAAAAAGAAGGACGGCGCGT
GCTGCGCATACGTCCTCCAGCTGCTGCGCTGGTACTTGAGGCTATACTTG
TCCCAACGGCCCGAGATGTCGTGAAAGGCGATGAAAAGCACCATCAACAG
GTGGCTCACCACCAGGGACACGCACACTACACCCGAAAACCACACGGCGC
GCTCCATCTCCGGCGAGGCCAGGAGCGTCGACACCCATTCCCAAACTTTT
TCCGCTCTTCTTCTTCCTTCCTCTCCTCCTTCATTCCCTCTTTCTCCTGT
CGCTTGACAGCCTCCGTCATAGGTCCCCAAGAGGAGCTCGGAAAGGGGCA
ATGCATGTGGCCATTGCCGCAGCCATGCTGCACCCATATCCATGGGTGCG
GGAAACCCCCCGACTGGGCAATCGGGGTCTCTTTCACCGCCAGGAGTCCA
CCTGTTGTATGTAGTAAGGGAGGGCAAATAGTGGGAAGGGTGTGA
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Synonyms
Publications