jgi.p|Nanoce1779_2|601471, mRNA_8296 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601471
Unique Name	mRNA_8296
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2448
Alignment location	scaffold_23:296612..299576 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601557
Track	FilteredModels2
ProteinId	601471

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:296612..299576 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601471	gene_8296	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601471	mRNA_8296-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8296	CDS_8296	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:296612..299576+
coding sequence from alignment at scaffold_23:296612..299576+

mRNA sequence

>mRNA_8296 ID=mRNA_8296|Name=jgi.p|Nanoce1779_2|601471|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp
TTCTTTACAAATGTCTTTTTTGTTTCTTTGTCTTGATTATCCTCCTGCTC
CGGTTACTCCTGCTCCTCCAGCTCCTCCTTCTTCTCCCCTCCTACCCTCC
CTCTCTCCCTCTCTCTAGAAAACCTAAAGTTCCCCTCCATCTTCATCATC
ATCATCCGCCAGATTATCCAGATCATCACTCGCGTCTTCATCGGGGCTCT
TGGCCAGCCCTTCGAACATTGACATGTCCAAGCCACTGAAAGCCGAGCCG
TCCACGTCCGGGTCAGGCATCTTCATGTAGAAATCCACCACTTTTTGAAT
TTCCTCTCTGAATTTCTGGGTGTCCTCCATCATGGCCCTGAAGTCATCGT
TCAAGAAGGGAGCCATCTGGGCCGCCACCTTGGGGTCCTGCGACACATTC
TCGAAGCTCTCCTTCAGCTTCAATCGGAGCATCTCCATGTCCTCTTCAGA
AGAAAGGTAACGCGCCACAATGGGGGAACGGACAAGCTTCCAGATGAAGG
CTTGGTACATCTTCGCCACCTTACCCATGTCCATCCCCTGGAACATCTTC
GCGGCGTCCTCGGGGGACCCAGCGCCCGCTAGCCCGCCAAGACCGCTGTT
TCCAAGCATGCCATTGAGCATCGACAGAAGCTCATCAGGTGTAGACGGGC
CCGCAGCAGCAGAAGCAGCAGGGGCAGCAGGAGCAGCTGGGGCGGACTCG
GACAGGTCCGTGTCCGTAGGAAGGGGAGGGCGAGGACGGGAGGGAGGAGG
GGCGCGGGGGGCATCACCTTTGGTGGGGACTATGTTGAGGGTGTCTCCCT
CCGTGACACCGGCGGCCAGGAGCTCCTCGGTGGAAGAGAGCTGCTTGCCT
TTGAAAAGGATGGCTTGCTGGGTAGGCTTGAGCCCGCTTTTGCCCTCCAT
TTGAGACTGGATATCTTGCACGCTGCTGGCAGTCAGGTCATACTTCTTGC
CGCGTAGGGTGACGACAATGTTGACAGGGGCCTAAGGTGATGAAAGAAGG
AGGAAAGGGCGAGGTCAAAGTGAATCATGCTTCGCCTCATATTGTACTGG
GACCAACACCTTCGCTTGCATTGCCTCCGATTACACACATGGACACGGAT
TGAATCGTGCCCTACAAGTAGCAGAACAACGAACAACGAACAGTACATAA
GGATGAAGATAACAGGAAATGAACACCGAGTCACTGATAAAGGAGCACCA
TCCCCATCTCTACAGCAACTGCAGGACGAGGACCCCTTCCCTGGTTCCTA
TCTTCACAGACGAACAGCTCCCCGAAGAAAACGTACCGCAGCGCCAAACA
CATAGGAAAAACAATAGCAGAAGAGGGTCAAGACAAGCAGGAATGTGGTC
GTGGTGATATTCTTCTTGGCCGCCATCGTTTTGAGATTGCTTTTGCTTGC
TGCTGCTAGATGCTGAATAGGGAGGTGATGATCCTTGTGTGCCTGTGTTG
GGGGTGGGAGGCAGGATGAGAGGACAATTAAAGTGGATGTGAGGGTGCAC
GCACTAGTAAAACTAGCTTGGGCTCGTTGTCCTTGTACTATTGGGATCTG
CAAGTAAGTTTGTTGAGTGCAGTCACAGCACAAAGAGACGGCAAAGAGGA
AGTTCCTATCATGCGGTTCTCAGCCCACTTCAACAGGTCGTTGCTTCGCT
GATGCATGCAATAATGTGGACGTGCCTTCCATACTATGCCAAATGACACG
CGCATCAACACGCGGCGGCCGTCTCCACCCTGAAATAACGACGCTCGAGT
TTGCTTTGTCACATACACAAAATCACAGGGCATCTCAGCGTAAGCAGACA
GCACCAGTCACGTCATCAGAACCGCACATCAGCAAGCGGCCGCGGCGGCG
CAGCAGCAACAACAGCATCAACAGCAGCAATAACCCTACTACGGAAATAA
CGACTTGTCTAGCCTCTCAATCAGAATAAATGGTGTGCGATACGTGCGAA
AAGAAACTCAGCAAGCTCTGCGTGCCCGACAAATGGAAAGAAGGCAGCCG
GAATGTGACGGGGGCTAGTGCTGCCAGAAGTGGTGGTGGTCCGCCCGGTT
CGATCAACAAGCTTTCTGAGAAGCGCAAGGCCCGGCTGGCAGAAGCAGGA
GGAGGTGGAGGGGTGGGAGGAAGGCAGTGTCGTATCTGTAAAGTGAGGGT
GATGGATGTACAGCGGCATTACTGCAATGGATGTGCGTACAAGAAAGCAA
TTTGTGCCATGTGCGGGAAGAAGGTGGGAAACACGAAGCTGTACAAGATG
AGCAGCAAGTGAACATAAAGTAGATCCGTGCGGCCATGAGTGGAAAAAGC
GATTAAGAGAAGCGCATGAATCAAGAAGGGAAGAAAGATAGAATGTACAG
TACCCCAAAAGAAGTCTTCGAATGACCCGGCCGCGGGCAAAAACAGAACA
CGGACCTGGGGTTACACCAAAACGTCAAGTAAATGCTAAGGGGGCGTG

protein sequence of jgi.p|Nanoce1779_2|601471

>mRNA_8296-protein ID=mRNA_8296-protein|Name=jgi.p|Nanoce1779_2|601471|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MVCDTCEKKLSKLCVPDKWKEGSRNVTGASAARSGGGPPGSINKLSEKRK
ARLAEAGGGGGVGGRQCRICKVRVMDVQRHYCNGCAYKKAICAMCGKKVG
NTKLYKMSSK*

mRNA from alignment at scaffold_23:296612..299576+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8296 ID=mRNA_8296|Name=jgi.p|Nanoce1779_2|601471|organism=Nannochloropsis oceanica|type=mRNA|length=2965bp|location=Sequence derived from alignment at scaffold_23:296612..299576+ (Nannochloropsis oceanica)
TTCTTTACAAATGTCTTTTTTGTTTCTTTGTCTTGATTATCCTCCTGCTC
CGGTTACTCCTGCTCCTCCAGCTCCTCCTTCTTCTCCCCTCCTACCCTCC
CTCTCTCCCTCTCTCTAGAAAACCTAAAGTTCCCCTCCATCTTCATCATC
ATCATCCGCCAGATTATCCAGATCATCACTCGCGTCTTCATCGGGGCTCT
TGGCCAGCCCTTCGAACATTGACATGTCCAAGCCACTGAAAGCCGAGCCG
TCCACGTCCGGGTCAGGCATCTTCATGTAGAAATCCACCACTTTTTGAAT
TTCCTGTAGGGGAGTAGAAAAAAAGTTGCAAGGGAAAAAGAAGAGAAGGA
GAAAATGTGGGGTCAGAAAGTCGGAAGAACGTGTGTGCCTGTATTCGTAT
GTGTGTGCGCCTGTGCGCCTCTGTCATAGGAACACAGGTATTTCATTGCT
TTGAGTCTCCTTTCCTCCCTCTCTCCCTTCCTTCCTCCCTCCCTCCCTAC
CTCTCTGAATTTCTGGGTGTCCTCCATCATGGCCCTGAAGTCATCGTTCA
AGAAGGGAGCCATCTGGGCCGCCACCTTGGGGTCCTGCGACACATTCTCG
AAGCTCTCCTTCAGCTTCAATCGGAGCATCTCCATGTCCTCTTCAGAAGA
AAGGTAACGCGCCACAATGGGGGAACGGACAAGCTTCCAGATGAAGGCTT
GGTACATCTTCGCCACCTTACCCATGTCCATCCCCTGGAACATCTTCGCG
GCGTCCTCGGGGGACCCAGCGCCCGCTAGCCCGCCTGATGTGGGAGGGGG
AAAGGAGGGAGGAGGAAGAGGTTAGTCAAGGAGGCGGCAAGGGGGGAGAA
AGAGGAAATCGCTTACCAAGACCGCTGTTTCCAAGCATGCCATTGAGCAT
CGACAGAAGCTCATCAGGTGTAGACGGGCCCGCAGCAGCAGAAGCAGCAG
GGGCAGCAGGAGCAGCTGGGGCGGACTCGGACAGGTCCGTGTCCGTAGGA
AGGGGAGGGCGAGGACGGGAGGGAGGAGGGGCGCGGGGGGCATCACCTTT
GGTGGGGACTATGTTGAGGGTGTCTCCCTCCGTGACACCGGCGGCCAGGA
GCTCCTCGGTGGAAGAGAGCTGCTTGCCTTTGAAAAGGATGGCTTGCTGG
GTAGGCTTGAGCCCGCTTTTGCCCTCCATTTGAGACTGGATATCTTGCAC
GCTGCTGGCAGTCAGGTCATACTTCTTGCCGCGTAGGGTGACGACAATGT
TGACAGGGGCCTAAGGTGATGAAAGAAGGAGGAAAGGGCGAGGTCAAAGT
GAATCATGCTTCGCCTCATATTGTACTGGGACCAACACCTTCGCTTGCAT
TGCCTCCGATTACACACATGGACACGGATTGAATCGTGCCCTACAAGTAG
CAGAACAACGAACAACGAACAGTACATAAGGATGAAGATAACAGGAAATG
AACACCGAGTCACTGATAAAGGAGCACCATCCCCATCTCTACAGCAACTG
CAGGACGAGGACCCCTTCCCTGGTTCCTATCTTCACAGACGAACAGCTCC
CCGAAGAAAACGTACCGCAGCGCCAAACACATAGGAAAAACAATAGCAGA
AGAGGGTCAAGACAAGCAGGAATGTGGTCGTGGTGATATTCTTCTTGGCC
GCCATCGTTTTGAGATTGCTTTTGCTTGCTGCTGCTAGATGCTGAATAGG
GAGGTGATGATCCTTGTGTGCCTGTGTTGGGGGTGGGAGGCAGGATGAGA
GGACAATTAAAGTGGATGTGAGGGTGCACGCACTAGTAAAACTAGCTTGG
GCTCGTTGTCCTTGTACTATTGGGATCTGCAAGTAAGTTTGTTGAGTGCA
GTCACAGCACAAAGAGACGGCAAAGAGGAAGTTCCTATCATGCGGTTCTC
AGCCCACTTCAACAGGTCGTTGCTTCGCTGATGCATGCAATAATGTGGAC
GTGCCTTCCATACTATGCCAAATGACACGCGCATCAACACGCGGCGGCCG
TCTCCACCCTGAAATAACGACGCTCGAGTTTGCTTTGTCACATACACAAA
ATCACAGGGCATCTCAGCGTAAGCAGACAGCACCAGTCACGTCATCAGAA
CCGCACATCAGCAAGCGGCCGCGGCGGCGCAGCAGCAACAACAGCATCAA
CAGCAGCAATAACCCTACTACGGAAATAACGACTTGTCTAGCCTCTCAAT
CAGGTGTGTGATGCATCCGCACAGGACGAAAAGAACAGTGTCCATTCATT
TCCCCCGCCTAAATGCCCTAACCGTCGGCGTCCCCTCATTAGATAAAAAT
TACCTCCTTCCTCATTCATCAGAATAAATGGTGTGCGATACGTGCGAAAA
GAAACTCAGCAAGCTCTGCGTGCCCGACAAATGGAAAGAAGGCAGCCGGA
ATGTGACGGGGGCTAGTGCTGCCAGAAGTGGTGGTGGTCCGCCCGGTTCG
ATCAACAAGCTTTCTGAGAAGCGCAAGGCCCGGCTGGCAGAAGCAGGAGG
AGGTGGAGGGGTGGGAGGAAGGCAGTGTCGTATCTGTAAAGTGAGGGTGA
TGGATGTACAGCGGCATTACTGCAATGGATGTGCGTACAAGGTGAGGTTA
AGGAAAGGAGAGAGGGAGGAAGGGGAGTAGTTTACCACTATTGCCCCCCC
AAATGCTCGCATTATAACACCTGGATGCGAATACCCACCTTCTCCCTTCC
CGACGAACAGAAAGCAATTTGTGCCATGTGCGGGAAGAAGGTGGGAAACA
CGAAGCTGTACAAGATGAGCAGCAAGTGAACATAAAGTAGATCCGTGCGG
CCATGAGTGGAAAAAGCGATTAAGAGAAGCGCATGAATCAAGAAGGGAAG
AAAGATAGAATGTACAGTACCCCAAAAGAAGTCTTCGAATGACCCGGCCG
CGGGCAAAAACAGAACACGGACCTGGGGTTACACCAAAACGTCAAGTAAA
TGCTAAGGGGGCGTG

Coding sequence (CDS) from alignment at scaffold_23:296612..299576+

>mRNA_8296 ID=mRNA_8296|Name=jgi.p|Nanoce1779_2|601471|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_23:296612..299576+ (Nannochloropsis oceanica)
ATGGTGTGCGATACGTGCGAAAAGAAACTCAGCAAGCTCTGCGTGCCCGA
CAAATGGAAAGAAGGCAGCCGGAATGTGACGGGGGCTAGTGCTGCCAGAA
GTGGTGGTGGTCCGCCCGGTTCGATCAACAAGCTTTCTGAGAAGCGCAAG
GCCCGGCTGGCAGAAGCAGGAGGAGGTGGAGGGGTGGGAGGAAGGCAGTG
TCGTATCTGTAAAGTGAGGGTGATGGATGTACAGCGGCATTACTGCAATG
GATGTGCGTACAAGAAAGCAATTTGTGCCATGTGCGGGAAGAAGGTGGGA
AACACGAAGCTGTACAAGATGAGCAGCAAGTGAATGGTGTGCGATACGTG
CGAAAAGAAACTCAGCAAGCTCTGCGTGCCCGACAAATGGAAAGAAGGCA
GCCGGAATGTGACGGGGGCTAGTGCTGCCAGAAGTGGTGGTGGTCCGCCC
GGTTCGATCAACAAGCTTTCTGAGAAGCGCAAGGCCCGGCTGGCAGAAGC
AGGAGGAGGTGGAGGGGTGGGAGGAAGGCAGTGTCGTATCTGTAAAGTGA
GGGTGATGGATGTACAGCGGCATTACTGCAATGGATGTGCGTACAAGAAA
GCAATTTGTGCCATGTGCGGGAAGAAGGTGGGAAACACGAAGCTGTACAA
GATGAGCAGCAAGTGA

Synonyms

Publications