jgi.p|Nanoce1779_2|602135, mRNA_8462 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602135
Unique NamemRNA_8462
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1225
Alignment locationscaffold_24:348086..349310 +

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Properties
Property NameValue
TranscriptId602221
TrackFilteredModels2
ProteinId602135
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:348086..349310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602135gene_8462Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602135mRNA_8462-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8462CDS_8462Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8462 ID=mRNA_8462|Name=jgi.p|Nanoce1779_2|602135|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp
AAAAAAACAGCCACCCTCCCTTATCCTGCCTGCGTCCTTCCCCTCTCCAC
CACGCTGCCGGTGGCCCTGGCCTTATAATTGGTTGGGACAATCGCAAACC
ATGGCCTCCTCCACAGCCCGTGTACTCCTTCAACAATTCTTTCTTGTTGA
TGACGACGACCTGCTGCTGAAAGGGGCAGGTGGCGCGGTCTTCCTTCTCT
ACAATGCACAAACATGGCTCCCCCACCACTACATCCTATGGGGACTCCTC
GTGCTAGCCGGGCTCGAGATTCTCGCGTGTCTAGTCTTTGTTTTCGGTCA
TGCCCGCCGAGCAGCCTCCATTCCTGTGCGAGGGAAACACCTGGATGTCC
TTGAAAAGTGGGACTTGATTTTTATATCGTTCAACAAGCTAGCCACCACC
CTCTTCTCCTACCACCTCCTCAAGTTCCAATGGTTTTCGTCTAGCCCTTC
TCAATTCGCTTGGAAAATCTCCGAGCTCACTTGGATGAACACTTTGGTCG
CCTTGCCATCACTTTACGTCACATACGATTTCTTCTACACATTATTCCAC
CGGTGTTTGCATCACCGGAGTGTGTACAAATACATCCACAAACATCATCA
CCGTCAGAAGGCGCCAAGTCGTGGTAACGTCGATGCCGTTAACGTCCACC
CCGTCGAATTCTTGATCGGAGAATACAACCATTTGTTCGCCCTGTGGTTG
GTATCCAGGTTTGTGGTCCCTGTCCACGTATACACCTCATTAGTATTTAT
TGTGCTAGGAGGTTTTTTGGCTTCTTTGAACCACACTCGGTTCGACGTGT
CTACGAGCGGGTGGTGCAGTGGACTGTATGAGGTGAGGAACCACGATGTA
CACCATTGGTTCCCCGAATCGAATTACGGGCAGTACCTCATGCTGTGGGA
CCACGTCTTTGGCTCGTTCAAGCCGTACCCGGAGAGTCGTAAGAAGGAGT
AAAGCAAGGGGAGGAAAGCAAGAGGGAGGGACGTATGATGTGACGAGAGG
AAGGAGGAGGATGGAAGAGATGGATAGGAGGGGGTTAGAGCTAGCATAGG
GGAGTGGAAAAGGAGAGAAGGGGGTGGTCCGAAATTTTGTGAAGGTGGAG
ACTGAAAATAGCGGTGAGAAAAGGCGGAGACAGAGACTGGGGGAAATGGT
GGGAGAGTACCAAATTAGATCAATAATCAAAGAACCCATTCAATAAAAGT
GTAACACAAGAACAGAAAAAAGTGC
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protein sequence of jgi.p|Nanoce1779_2|602135

>mRNA_8462-protein ID=mRNA_8462-protein|Name=jgi.p|Nanoce1779_2|602135|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MASSTARVLLQQFFLVDDDDLLLKGAGGAVFLLYNAQTWLPHHYILWGLL
VLAGLEILACLVFVFGHARRAASIPVRGKHLDVLEKWDLIFISFNKLATT
LFSYHLLKFQWFSSSPSQFAWKISELTWMNTLVALPSLYVTYDFFYTLFH
RCLHHRSVYKYIHKHHHRQKAPSRGNVDAVNVHPVEFLIGEYNHLFALWL
VSRFVVPVHVYTSLVFIVLGGFLASLNHTRFDVSTSGWCSGLYEVRNHDV
HHWFPESNYGQYLMLWDHVFGSFKPYPESRKKE*
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mRNA from alignment at scaffold_24:348086..349310+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8462 ID=mRNA_8462|Name=jgi.p|Nanoce1779_2|602135|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp|location=Sequence derived from alignment at scaffold_24:348086..349310+ (Nannochloropsis oceanica)
AAAAAAACAGCCACCCTCCCTTATCCTGCCTGCGTCCTTCCCCTCTCCAC
CACGCTGCCGGTGGCCCTGGCCTTATAATTGGTTGGGACAATCGCAAACC
ATGGCCTCCTCCACAGCCCGTGTACTCCTTCAACAATTCTTTCTTGTTGA
TGACGACGACCTGCTGCTGAAAGGGGCAGGTGGCGCGGTCTTCCTTCTCT
ACAATGCACAAACATGGCTCCCCCACCACTACATCCTATGGGGACTCCTC
GTGCTAGCCGGGCTCGAGATTCTCGCGTGTCTAGTCTTTGTTTTCGGTCA
TGCCCGCCGAGCAGCCTCCATTCCTGTGCGAGGGAAACACCTGGATGTCC
TTGAAAAGTGGGACTTGATTTTTATATCGTTCAACAAGCTAGCCACCACC
CTCTTCTCCTACCACCTCCTCAAGTTCCAATGGTTTTCGTCTAGCCCTTC
TCAATTCGCTTGGAAAATCTCCGAGCTCACTTGGATGAACACTTTGGTCG
CCTTGCCATCACTTTACGTCACATACGATTTCTTCTACACATTATTCCAC
CGGTGTTTGCATCACCGGAGTGTGTACAAATACATCCACAAACATCATCA
CCGTCAGAAGGCGCCAAGTCGTGGTAACGTCGATGCCGTTAACGTCCACC
CCGTCGAATTCTTGATCGGAGAATACAACCATTTGTTCGCCCTGTGGTTG
GTATCCAGGTTTGTGGTCCCTGTCCACGTATACACCTCATTAGTATTTAT
TGTGCTAGGAGGTTTTTTGGCTTCTTTGAACCACACTCGGTTCGACGTGT
CTACGAGCGGGTGGTGCAGTGGACTGTATGAGGTGAGGAACCACGATGTA
CACCATTGGTTCCCCGAATCGAATTACGGGCAGTACCTCATGCTGTGGGA
CCACGTCTTTGGCTCGTTCAAGCCGTACCCGGAGAGTCGTAAGAAGGAGT
AAAGCAAGGGGAGGAAAGCAAGAGGGAGGGACGTATGATGTGACGAGAGG
AAGGAGGAGGATGGAAGAGATGGATAGGAGGGGGTTAGAGCTAGCATAGG
GGAGTGGAAAAGGAGAGAAGGGGGTGGTCCGAAATTTTGTGAAGGTGGAG
ACTGAAAATAGCGGTGAGAAAAGGCGGAGACAGAGACTGGGGGAAATGGT
GGGAGAGTACCAAATTAGATCAATAATCAAAGAACCCATTCAATAAAAGT
GTAACACAAGAACAGAAAAAAGTGC
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Coding sequence (CDS) from alignment at scaffold_24:348086..349310+

>mRNA_8462 ID=mRNA_8462|Name=jgi.p|Nanoce1779_2|602135|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_24:348086..349310+ (Nannochloropsis oceanica)
ATGGCCTCCTCCACAGCCCGTGTACTCCTTCAACAATTCTTTCTTGTTGA
TGACGACGACCTGCTGCTGAAAGGGGCAGGTGGCGCGGTCTTCCTTCTCT
ACAATGCACAAACATGGCTCCCCCACCACTACATCCTATGGGGACTCCTC
GTGCTAGCCGGGCTCGAGATTCTCGCGTGTCTAGTCTTTGTTTTCGGTCA
TGCCCGCCGAGCAGCCTCCATTCCTGTGCGAGGGAAACACCTGGATGTCC
TTGAAAAGTGGGACTTGATTTTTATATCGTTCAACAAGCTAGCCACCACC
CTCTTCTCCTACCACCTCCTCAAGTTCCAATGGTTTTCGTCTAGCCCTTC
TCAATTCGCTTGGAAAATCTCCGAGCTCACTTGGATGAACACTTTGGTCG
CCTTGCCATCACTTTACGTCACATACGATTTCTTCTACACATTATTCCAC
CGGTGTTTGCATCACCGGAGTGTGTACAAATACATCCACAAACATCATCA
CCGTCAGAAGGCGCCAAGTCGTGGTAACGTCGATGCCGTTAACGTCCACC
CCGTCGAATTCTTGATCGGAGAATACAACCATTTGTTCGCCCTGTGGTTG
GTATCCAGGTTTGTGGTCCCTGTCCACGTATACACCTCATTAGTATTTAT
TGTGCTAGGAGGTTTTTTGGCTTCTTTGAACCACACTCGGTTCGACGTGT
CTACGAGCGGGTGGTGCAGTGGACTGTATGAGGTGAGGAACCACGATGTA
CACCATTGGTTCCCCGAATCGAATTACGGGCAGTACCTCATGCTGTGGGA
CCACGTCTTTGGCTCGTTCAAGCCGTACCCGGAGAGTCGTAAGAAGGAGT
AA
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Synonyms
Publications