jgi.p|Nanoce1779_2|602440, mRNA_8086 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602440
Unique Name	mRNA_8086
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1482
Alignment location	scaffold_25:119085..120566 +

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Properties


Property Name	Value
TranscriptId	602526
Track	FilteredModels2
ProteinId	602440

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:119085..120566 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602440	gene_8086	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602440	mRNA_8086-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8086	CDS_8086	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:119085..120566+
coding sequence from alignment at scaffold_25:119085..120566+

mRNA sequence

>mRNA_8086 ID=mRNA_8086|Name=jgi.p|Nanoce1779_2|602440|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
CCCCTGCTTCCTGGTGGTCCATCGCAAGGTTATTCAGAGCCGTCAAGGCA
TGCTCCGCCACCTCAGCTTGAGCATTCAGTTCGCCCGCTGCATCCCCCAA
CAACAAGACCAAGGAAGAGATTCCTCCTGTCCTAACCAGCGCTGATCGGT
TCTGTGCTTGCCTCGACAGGTCAGCCAGGGCCTCCGCCACATGCCCTCTA
ATTTCGACTTCATTACTAGACGCAAGAGGAAGAAGGTGAGGTAAAATATT
GGATGCCAGAATTTTGGCGTCGATGAAGCCTCGTGTGTATATGTCGAGGG
AACCAACTCCGGAACTGTTACTGCTGCTGCTGCTGTTGTTGGTGCCACAG
CTTTTTTCGTCGTCATGGGGCCGGGCACAGAGTGAAGCGACGATAGAAAC
GGCTTGGCGTTCTATATCCTTGACGTTTGAGGTAAGCCGTTCCTCGAGGA
GGGGGAGGAGTCCGCGGTTGACAAGCAGGACACGGCTAGCTTCTACATGT
GCAGTCTGCGCGAGAGAAAACGCCGTTAGAATAGTAGCATCACGATCGGA
AGGATCCATCTGCAGGGAAGAAGCAAGAAAGGCACTACTGCCCTGCAACT
GCTGTTGTTGCGCTCGAAATGACGAGGACGACTTAGGACAGGCTCCTCCT
CCTCCTCCTCCTGCTCCTCCGTTTCCTTGCCCTCTTCGTCCCCCCGAGGT
GATTGTCCGACCACAGTCATCCTCTGCCAGCATCATTGCAAGTTCCACCA
CCCTCCCCAAGCTATCAGTTATGGTCGAGGAGCTCTTTGTCTTGCTCGTC
GTCCAGGCCAAAAACCTCTCCGAGGTTGGAGGGGCATCTCCGGATGCATG
CCTCCATTCCTGCTTGATTATAACGATCATGTGCGCCAGTACACGTGCAA
CCAAATGCCTGTAATGACAAGGACTGGTCTCATCCACTCTTTGCATTTCC
TCCGTTTCAGGTGCTGAAGTTGGCTTTGGCTCATCTAGCTCCTGCTTTTG
CTCCTGCTCGCCCTGCTGCAACAACAGCTCCTCCTGCTGCTTTGCCTCTC
GGGCCTCCTTGCTCGTTACTAGCAACAGGCGCAACGCATCCAGAATGCCC
CGTGAAAATCTCAACAAAACCCACGCATCGTCTACACCCAAGATGGCATG
GGCGATGGCCTTAGCCGACGCCAATTGCACGTCGGGCCGGACTTGAATCA
ACGAGGCCAGCCCCCCGGCAGCCAGAACTTGGCCTCTCAAGTCAGCTGAA
GTGGCGGCATACTTGCCTAGCTGGATGCACGCCTCATGCTTCTCCTTCTT
GGTGCCCGTGCGGAGTTTGCAGACGTGGAAGAGGATGAGGTTGGACGGGC
TGACCCGCTGGGCGTACCCGTTGGAGAAGTCTCCTTGCAAGTATGTCTCG
CAGTTGGTGCAAGAGGGAGTGGCCGTCGAGGCTGTAGAAGACGACATCTC
CGCCGCTTCCGTGTCCGGATCGTCCATGATCT

protein sequence of jgi.p|Nanoce1779_2|602440

>mRNA_8086-protein ID=mRNA_8086-protein|Name=jgi.p|Nanoce1779_2|602440|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MKPRVYMSREPTPELLLLLLLLLVPQLFSSSWGRAQSEATIETAWRSISL
TFEVSRSSRRGRSPRLTSRTRLASTCAVCARENAVRIVASRSEGSICREE
ARKALLPCNCCCCARNDEDDLGQAPPPPPPAPPFPCPLRPPEVIVRPQSS
SASIIASSTTLPKLSVMVEELFVLLVVQAKNLSEVGGASPDACLHSCLII
TIMCASTRATKCL*

mRNA from alignment at scaffold_25:119085..120566+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8086 ID=mRNA_8086|Name=jgi.p|Nanoce1779_2|602440|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at scaffold_25:119085..120566+ (Nannochloropsis oceanica)
CCCCTGCTTCCTGGTGGTCCATCGCAAGGTTATTCAGAGCCGTCAAGGCA
TGCTCCGCCACCTCAGCTTGAGCATTCAGTTCGCCCGCTGCATCCCCCAA
CAACAAGACCAAGGAAGAGATTCCTCCTGTCCTAACCAGCGCTGATCGGT
TCTGTGCTTGCCTCGACAGGTCAGCCAGGGCCTCCGCCACATGCCCTCTA
ATTTCGACTTCATTACTAGACGCAAGAGGAAGAAGGTGAGGTAAAATATT
GGATGCCAGAATTTTGGCGTCGATGAAGCCTCGTGTGTATATGTCGAGGG
AACCAACTCCGGAACTGTTACTGCTGCTGCTGCTGTTGTTGGTGCCACAG
CTTTTTTCGTCGTCATGGGGCCGGGCACAGAGTGAAGCGACGATAGAAAC
GGCTTGGCGTTCTATATCCTTGACGTTTGAGGTAAGCCGTTCCTCGAGGA
GGGGGAGGAGTCCGCGGTTGACAAGCAGGACACGGCTAGCTTCTACATGT
GCAGTCTGCGCGAGAGAAAACGCCGTTAGAATAGTAGCATCACGATCGGA
AGGATCCATCTGCAGGGAAGAAGCAAGAAAGGCACTACTGCCCTGCAACT
GCTGTTGTTGCGCTCGAAATGACGAGGACGACTTAGGACAGGCTCCTCCT
CCTCCTCCTCCTGCTCCTCCGTTTCCTTGCCCTCTTCGTCCCCCCGAGGT
GATTGTCCGACCACAGTCATCCTCTGCCAGCATCATTGCAAGTTCCACCA
CCCTCCCCAAGCTATCAGTTATGGTCGAGGAGCTCTTTGTCTTGCTCGTC
GTCCAGGCCAAAAACCTCTCCGAGGTTGGAGGGGCATCTCCGGATGCATG
CCTCCATTCCTGCTTGATTATAACGATCATGTGCGCCAGTACACGTGCAA
CCAAATGCCTGTAATGACAAGGACTGGTCTCATCCACTCTTTGCATTTCC
TCCGTTTCAGGTGCTGAAGTTGGCTTTGGCTCATCTAGCTCCTGCTTTTG
CTCCTGCTCGCCCTGCTGCAACAACAGCTCCTCCTGCTGCTTTGCCTCTC
GGGCCTCCTTGCTCGTTACTAGCAACAGGCGCAACGCATCCAGAATGCCC
CGTGAAAATCTCAACAAAACCCACGCATCGTCTACACCCAAGATGGCATG
GGCGATGGCCTTAGCCGACGCCAATTGCACGTCGGGCCGGACTTGAATCA
ACGAGGCCAGCCCCCCGGCAGCCAGAACTTGGCCTCTCAAGTCAGCTGAA
GTGGCGGCATACTTGCCTAGCTGGATGCACGCCTCATGCTTCTCCTTCTT
GGTGCCCGTGCGGAGTTTGCAGACGTGGAAGAGGATGAGGTTGGACGGGC
TGACCCGCTGGGCGTACCCGTTGGAGAAGTCTCCTTGCAAGTATGTCTCG
CAGTTGGTGCAAGAGGGAGTGGCCGTCGAGGCTGTAGAAGACGACATCTC
CGCCGCTTCCGTGTCCGGATCGTCCATGATCT

Coding sequence (CDS) from alignment at scaffold_25:119085..120566+

>mRNA_8086 ID=mRNA_8086|Name=jgi.p|Nanoce1779_2|602440|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_25:119085..120566+ (Nannochloropsis oceanica)
ATGAAGCCTCGTGTGTATATGTCGAGGGAACCAACTCCGGAACTGTTACT
GCTGCTGCTGCTGTTGTTGGTGCCACAGCTTTTTTCGTCGTCATGGGGCC
GGGCACAGAGTGAAGCGACGATAGAAACGGCTTGGCGTTCTATATCCTTG
ACGTTTGAGGTAAGCCGTTCCTCGAGGAGGGGGAGGAGTCCGCGGTTGAC
AAGCAGGACACGGCTAGCTTCTACATGTGCAGTCTGCGCGAGAGAAAACG
CCGTTAGAATAGTAGCATCACGATCGGAAGGATCCATCTGCAGGGAAGAA
GCAAGAAAGGCACTACTGCCCTGCAACTGCTGTTGTTGCGCTCGAAATGA
CGAGGACGACTTAGGACAGGCTCCTCCTCCTCCTCCTCCTGCTCCTCCGT
TTCCTTGCCCTCTTCGTCCCCCCGAGGTGATTGTCCGACCACAGTCATCC
TCTGCCAGCATCATTGCAAGTTCCACCACCCTCCCCAAGCTATCAGTTAT
GGTCGAGGAGCTCTTTGTCTTGCTCGTCGTCCAGGCCAAAAACCTCTCCG
AGGTTGGAGGGGCATCTCCGGATGCATGCCTCCATTCCTGCTTGATTATA
ACGATCATGTGCGCCAGTACACGTGCAACCAAATGCCTGTAA

Synonyms

Publications