jgi.p|Nanoce1779_2|603916, mRNA_8766 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603916
Unique Name	mRNA_8766
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	950
Alignment location	scaffold_28:72273..73222 +

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Properties


Property Name	Value
TranscriptId	604002
Track	FilteredModels2
ProteinId	603916

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:72273..73222 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603916	gene_8766	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603916	mRNA_8766-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8766	CDS_8766	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:72273..73222+
coding sequence from alignment at scaffold_28:72273..73222+

mRNA sequence

>mRNA_8766 ID=mRNA_8766|Name=jgi.p|Nanoce1779_2|603916|organism=Nannochloropsis oceanica|type=mRNA|length=950bp
CATCATGAGCGAATCGGCCTCCTTACGGCCGCGCCATTTCTGTTTGTATG
AATTCAGGCATGGGCATGGGCATGGGCGATCAGTGCCTAGGGACTACACG
TACATGAAAACACTGCGTGAAAATGTTGCCACCTTGACCTGAGAGCTTAT
TTTTCGTCTTCCTGTATTCGGTGGCTTGGACTAGCCACTTGGACGATGGA
CAGCACCACTATCATCTCTCACCCTGGCCCACCCCTCTGACCTAATCCAC
ACTCTTCTTTACGCACACCTCCAAAACACCGGCAGCGCCGAAATCATGCG
GACCCGCAGCCTCTTGGCGTGGTTGGGCGGCTTCGAGGCCCGCGTGGCGG
CGGCCATTAGCGAGGACGATGACAATGCCATTGCCCTGGCCCTCCTCCAA
AGTGGGCACGTCCTGTGGAACATCATGGACCAGCTGCACGACGGTGAGCT
TCAAGGCACGCGGGACGACAAGACTGAGGAGGGTGAGGAGGAGGATATCA
AGCGATGCTGGAAAGCCCTTTTGCCCTTCCTTCGTCCTACCCTCCCCCGG
GCCATCGCTGCTAAGCTTGCGTCGTCTTCCTCCTCCCCTTCTTCGTCCTT
TCTCATGCCTTTGTCCATGCTCCCCGCCGTCCTCGAAACCTTCCTGGGCG
CCGCCGTAGGCTCAAAGGTACCAAAACGCTCACAAAGTATCCATCAAATC
CTGGCCTTGTCGGTACGTACAATTATGAGGAGGGGAGTGTAGGGAGGAAG
GAAAGGCAGAGAGGAAGGGCCTGTAGCTGGACTCGAGCTCACCAAACACT
TCTCTATGAAATAGCCTGAGTACCAGGAGCAGCTCAAGACCGTAATTGAA
GAGCAGATGGCGGCTAAGAACCGCGAAGGAAGCGACAATGACGATGACGA
CGACGGGGAAAGTGAGCAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG

protein sequence of jgi.p|Nanoce1779_2|603916

>mRNA_8766-protein ID=mRNA_8766-protein|Name=jgi.p|Nanoce1779_2|603916|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MRTRSLLAWLGGFEARVAAAISEDDDNAIALALLQSGHVLWNIMDQLHDG
ELQGTRDDKTEEGEEEDIKRCWKALLPFLRPTLPRAIAAKLASSSSSPSS
SFLMPLSMLPAVLETFLGAAVGSKVPKRSQSIHQILALSVRTIMRRGV*

mRNA from alignment at scaffold_28:72273..73222+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8766 ID=mRNA_8766|Name=jgi.p|Nanoce1779_2|603916|organism=Nannochloropsis oceanica|type=mRNA|length=950bp|location=Sequence derived from alignment at scaffold_28:72273..73222+ (Nannochloropsis oceanica)
CATCATGAGCGAATCGGCCTCCTTACGGCCGCGCCATTTCTGTTTGTATG
AATTCAGGCATGGGCATGGGCATGGGCGATCAGTGCCTAGGGACTACACG
TACATGAAAACACTGCGTGAAAATGTTGCCACCTTGACCTGAGAGCTTAT
TTTTCGTCTTCCTGTATTCGGTGGCTTGGACTAGCCACTTGGACGATGGA
CAGCACCACTATCATCTCTCACCCTGGCCCACCCCTCTGACCTAATCCAC
ACTCTTCTTTACGCACACCTCCAAAACACCGGCAGCGCCGAAATCATGCG
GACCCGCAGCCTCTTGGCGTGGTTGGGCGGCTTCGAGGCCCGCGTGGCGG
CGGCCATTAGCGAGGACGATGACAATGCCATTGCCCTGGCCCTCCTCCAA
AGTGGGCACGTCCTGTGGAACATCATGGACCAGCTGCACGACGGTGAGCT
TCAAGGCACGCGGGACGACAAGACTGAGGAGGGTGAGGAGGAGGATATCA
AGCGATGCTGGAAAGCCCTTTTGCCCTTCCTTCGTCCTACCCTCCCCCGG
GCCATCGCTGCTAAGCTTGCGTCGTCTTCCTCCTCCCCTTCTTCGTCCTT
TCTCATGCCTTTGTCCATGCTCCCCGCCGTCCTCGAAACCTTCCTGGGCG
CCGCCGTAGGCTCAAAGGTACCAAAACGCTCACAAAGTATCCATCAAATC
CTGGCCTTGTCGGTACGTACAATTATGAGGAGGGGAGTGTAGGGAGGAAG
GAAAGGCAGAGAGGAAGGGCCTGTAGCTGGACTCGAGCTCACCAAACACT
TCTCTATGAAATAGCCTGAGTACCAGGAGCAGCTCAAGACCGTAATTGAA
GAGCAGATGGCGGCTAAGAACCGCGAAGGAAGCGACAATGACGATGACGA
CGACGGGGAAAGTGAGCAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG

Coding sequence (CDS) from alignment at scaffold_28:72273..73222+

>mRNA_8766 ID=mRNA_8766|Name=jgi.p|Nanoce1779_2|603916|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_28:72273..73222+ (Nannochloropsis oceanica)
ATGCGGACCCGCAGCCTCTTGGCGTGGTTGGGCGGCTTCGAGGCCCGCGT
GGCGGCGGCCATTAGCGAGGACGATGACAATGCCATTGCCCTGGCCCTCC
TCCAAAGTGGGCACGTCCTGTGGAACATCATGGACCAGCTGCACGACGGT
GAGCTTCAAGGCACGCGGGACGACAAGACTGAGGAGGGTGAGGAGGAGGA
TATCAAGCGATGCTGGAAAGCCCTTTTGCCCTTCCTTCGTCCTACCCTCC
CCCGGGCCATCGCTGCTAAGCTTGCGTCGTCTTCCTCCTCCCCTTCTTCG
TCCTTTCTCATGCCTTTGTCCATGCTCCCCGCCGTCCTCGAAACCTTCCT
GGGCGCCGCCGTAGGCTCAAAGGTACCAAAACGCTCACAAAGTATCCATC
AAATCCTGGCCTTGTCGGTACGTACAATTATGAGGAGGGGAGTGTAG

Synonyms

Publications