jgi.p|Nanoce1779_2|576351, mRNA_142 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576351
Unique NamemRNA_142
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length952
Alignment locationscaffold_3:368176..369967 -

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Properties
Property NameValue
TranscriptId576437
TrackFilteredModels2
ProteinId576351
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:368176..369967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576351gene_142Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576351mRNA_142-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_142CDS_142Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_142 ID=mRNA_142|Name=jgi.p|Nanoce1779_2|576351|organism=Nannochloropsis oceanica|type=mRNA|length=952bp
ACAGGCCGGAACGCTGTCTCCAGCTCCTTGTTATTACCGAGCAGGACAAG
ACGCGACGGGACGGACTTCAAAAAGCCATATTCTACACTATCATCATCCC
GCATCATCAGTTGCTTTATTCCTCTTCCTCTCCTCGCCTTCCCTGTGACA
ACACAAAGCACTACAAACCTTCACCATGAACGCCGACGCCCAAAACCAAG
AGCTCATGCGGCTCTACCGCATCCGTAAGACCGTCCTCAAGATGCTTGCC
AAGCGCGGGTATAACGTGCTTGAACAAACTCTGGAAGCCACCTTCCAATC
TTTCTCTGACGACGTTGCGCGGATCTCCCTTGAAAACAACAATTGTACGG
CCCGGGAGGCGTGTACGATCAACGTTGGCAAGATTGACGATGCTTCCGAT
GTGGTGTTTGTCTTTTTTTCGGATGATGAGAAGGGCCTAGGCACCAAGCC
CATTCAGAAGTATGTCGAGCGCCTGTTGCAAGCCGGTTCGAATTGCGGTA
TCATCGTCTACCGGAATAATATAACGGCCATCGCCAAAAAGCTCCTGCAA
GCGGGGGCAATCCCAGGGGTGAAGCTCGAGGTGTTCAAGGAATCGGAGCT
CCTGGTCGACATTACCGAGCACACCCTCGTTCCTGAACATGTCGTCCTTA
CACCCGACCAAAAAGCAGAGGTTTTGGGTCGGTACAAATTAAAGGAAAGT
CAACTCCCCAAGATCCAATCAGCTGACCCGATTGCGCGTTATTATGGCTT
ACAGCGAGGGACGGTGGTGAAGATAATTCGATTGTCTGAGACAGCGGGAA
GGTACATCACGTATCGGGTATGTGTATGAGTGAATGAAAAAGAAGTAACG
AGAAAACATAAAAAAATTAGTTGGTGGAGCATTGTGGGGGGTTTTCGTTA
TTGTTGTTTCTTTGTAGCGTGTAACCAGCGGGTAGTTCGTGTAAAGGAAA
AC
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protein sequence of jgi.p|Nanoce1779_2|576351

>mRNA_142-protein ID=mRNA_142-protein|Name=jgi.p|Nanoce1779_2|576351|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MNADAQNQELMRLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARI
SLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERL
LQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHT
LVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKI
IRLSETAGRYITYRVCV*
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mRNA from alignment at scaffold_3:368176..369967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_142 ID=mRNA_142|Name=jgi.p|Nanoce1779_2|576351|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at scaffold_3:368176..369967- (Nannochloropsis oceanica)
ACAGGCCGGAACGCTGTCTCCAGCTCCTTGTTATTACCGAGCAGGACAAG
ACGCGACGGGACGGACTTCAAAAAGCCATATTCTACACTATCATCATCCC
GCATCATCAGTTGCTTTATTCCTCTTCCTCTCCTCGCCTTCCCTGTGACA
ACACAAAGGTATGTCTTTGTCTGTTTGTCTCGGAAATTTAAGTCATCTCT
ACCCTGCTCTGTCTGCATTTTTGCCTTCGTCGAAGCTGCCCTTATCCGCC
TGTCTATCGTCCGAAATCGTGATACCAAAATTTCCTCCATTGAGAGGATA
CTTAGCCTGTTATTCCTACTGGTGTGGTTGTTGTGTTGTTGTGTTGTGTG
TTGTGGCCTTTTGTGGCCTGTGGCCGGCGGCTGCACAGTTTAGAATACTT
GGCATAACCTTGTCCTTGTATCATCCATGCACATTCGTTCATTTCGTAGC
TTTTCGTTTTGTGTCCACCGATCAAGGGAGAAAGGGCCTCATCCTCACCT
AAAACACCCATTACGCATATAGCACTACAAACCTTCACCATGAACGCCGA
CGCCCAAAACCAAGAGCTCATGCGGCTCTACCGCATCCGTAAGACCGTCC
TCAAGATGCTTGCCAAGCGCGGGTATAACGTGCTTGAACAAACTCTGGAA
GCCACCTTCCAATCTTTCTCTGACGACGTTGCGCGGATCTCCCTTGAAAA
CAACAATTGTACGGCCCGGGAGGCGTGTACGATCAACGTTGGCAAGATTG
ACGATGCTTCCGATGTGGTGTTTGTCTTTTTTTCGGATGATGAGAAGGTA
AGATGTGGAGAGAAGGAAGGGAAAAGTGGAGGGAGTTTATATACTTAATT
AATCGTCTTCCTCCCCTAGTATTATTGTTTACACTTTCCAAATAAAGGTG
GCTTAAGTATTCACTCACTGCTCCTCCTCCTCCCTTCTTCCCTCCCCATT
CTTCCTTTATTTTTTGCATCAATCACAAGGGCCTAGGCACCAAGCCCATT
CAGAAGTATGTCGAGCGCCTGTTGCAAGCCGGTTCGAATTGCGGTATCAT
CGTCTACCGGAATAATATAACGGCCATCGCCAAAAAGCTCCTGCAAGCGG
GGGCAATCCCAGGGGTGAAGCTCGAGGTGTTCAAGGTGAGTTGAATAAAA
GATGTATGTGCTTGTTAATTTTTCTCGCATTTTCGTGTTTCTTTCAAATT
GTTCGCAGCGTGCGTCGGCTTTATGTACGCTCTCGCTCACTCACACAACC
TTTCCCTTCTGTGGCAATCTGGTGTCCTTGTAGATATCACTGCGCACACT
ATTATTCCTTAACACGGCATCCTCATGCCCGATCGCATTTCCAGAGCTCT
TTGGTCACATTCTTATCAAATTACCCTCTCTCCTTCCTTCCCACCCATCC
TCCCCTCCCCCCCTACCTCCCCTTCCCAGGAATCGGAGCTCCTGGTCGAC
ATTACCGAGCACACCCTCGTTCCTGAACATGTCGTCCTTACACCCGACCA
AAAAGCAGAGGTTTTGGGTCGGTACAAATTAAAGGAAAGTCAACTCCCCA
AGATCCAATCAGCTGACCCGATTGCGCGTTATTATGGCTTACAGCGAGGG
ACGGTGGTGAAGATAATTCGATTGTCTGAGACAGCGGGAAGGTACATCAC
GTATCGGGTATGTGTATGAGTGAATGAAAAAGAAGTAACGAGAAAACATA
AAAAAATTAGTTGGTGGAGCATTGTGGGGGGTTTTCGTTATTGTTGTTTC
TTTGTAGCGTGTAACCAGCGGGTAGTTCGTGTAAAGGAAAAC
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Coding sequence (CDS) from alignment at scaffold_3:368176..369967-

>mRNA_142 ID=mRNA_142|Name=jgi.p|Nanoce1779_2|576351|organism=Nannochloropsis oceanica|type=CDS|length=1962bp|location=Sequence derived from alignment at scaffold_3:368176..369967- (Nannochloropsis oceanica)
GAATCGGAGCTCCTGGTCGACATTACCGAGCACACCCTCGTTCCTGAACA
TGTCGTCCTTACACCCGACCAAAAAGCAGAGGTTTTGGGTCGGTACAAAT
TAAAGGAAAGTCAACTCCCCAAGATCCAATCAGCTGACCCGATTGCGCGT
TATTATGGCTTACAGCGAGGGACGGTGGTGAAGATAATTCGATTGTCTGA
GACAGCGGGAAGGTACATCACGTATCGGGTATGTGTATGAGGCCTAGGCA
CCAAGCCCATTCAGAAGTATGTCGAGCGCCTGTTGCAAGCCGGTTCGAAT
TGCGGTATCATCGTCTACCGGAATAATATAACGGCCATCGCCAAAAAGCT
CCTGCAAGCGGGGGCAATCCCAGGGGTGAAGCTCGAGGTGTTCAAGATGA
ACGCCGACGCCCAAAACCAAGAGCTCATGCGGCTCTACCGCATCCGTAAG
ACCGTCCTCAAGATGCTTGCCAAGCGCGGGTATAACGTGCTTGAACAAAC
TCTGGAAGCCACCTTCCAATCTTTCTCTGACGACGTTGCGCGGATCTCCC
TTGAAAACAACAATTGTACGGCCCGGGAGGCGTGTACGATCAACGTTGGC
AAGATTGACGATGCTTCCGATGTGGTGTTTGTCTTTTTTTCGGATGATGA
GAAGGAATCGGAGCTCCTGGTCGACATTACCGAGCACACCCTCGTTCCTG
AACATGTCGTCCTTACACCCGACCAAAAAGCAGAGGTTTTGGGTCGGTAC
AAATTAAAGGAAAGTCAACTCCCCAAGATCCAATCAGCTGACCCGATTGC
GCGTTATTATGGCTTACAGCGAGGGACGGTGGTGAAGATAATTCGATTGT
CTGAGACAGCGGGAAGGTACATCACGTATCGGGTATGTGTATGAGGCCTA
GGCACCAAGCCCATTCAGAAGTATGTCGAGCGCCTGTTGCAAGCCGGTTC
GAATTGCGGTATCATCGTCTACCGGAATAATATAACGGCCATCGCCAAAA
AGCTCCTGCAAGCGGGGGCAATCCCAGGGGTGAAGCTCGAGGTGTTCAAG
ATGAACGCCGACGCCCAAAACCAAGAGCTCATGCGGCTCTACCGCATCCG
TAAGACCGTCCTCAAGATGCTTGCCAAGCGCGGGTATAACGTGCTTGAAC
AAACTCTGGAAGCCACCTTCCAATCTTTCTCTGACGACGTTGCGCGGATC
TCCCTTGAAAACAACAATTGTACGGCCCGGGAGGCGTGTACGATCAACGT
TGGCAAGATTGACGATGCTTCCGATGTGGTGTTTGTCTTTTTTTCGGATG
ATGAGAAGGAATCGGAGCTCCTGGTCGACATTACCGAGCACACCCTCGTT
CCTGAACATGTCGTCCTTACACCCGACCAAAAAGCAGAGGTTTTGGGTCG
GTACAAATTAAAGGAAAGTCAACTCCCCAAGATCCAATCAGCTGACCCGA
TTGCGCGTTATTATGGCTTACAGCGAGGGACGGTGGTGAAGATAATTCGA
TTGTCTGAGACAGCGGGAAGGTACATCACGTATCGGGTATGTGTATGAGG
CCTAGGCACCAAGCCCATTCAGAAGTATGTCGAGCGCCTGTTGCAAGCCG
GTTCGAATTGCGGTATCATCGTCTACCGGAATAATATAACGGCCATCGCC
AAAAAGCTCCTGCAAGCGGGGGCAATCCCAGGGGTGAAGCTCGAGGTGTT
CAAGATGAACGCCGACGCCCAAAACCAAGAGCTCATGCGGCTCTACCGCA
TCCGTAAGACCGTCCTCAAGATGCTTGCCAAGCGCGGGTATAACGTGCTT
GAACAAACTCTGGAAGCCACCTTCCAATCTTTCTCTGACGACGTTGCGCG
GATCTCCCTTGAAAACAACAATTGTACGGCCCGGGAGGCGTGTACGATCA
ACGTTGGCAAGATTGACGATGCTTCCGATGTGGTGTTTGTCTTTTTTTCG
GATGATGAGAAG
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Synonyms
Publications