jgi.p|Nanoce1779_2|668524, mRNA_512 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668524
Unique NamemRNA_512
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2241
Alignment locationscaffold_3:1238976..1241216 -

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Properties
Property NameValue
TranscriptId668610
TrackFilteredModels2
ProteinId668524
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1238976..1241216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668524gene_512Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668524mRNA_512-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_512CDS_512Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_512 ID=mRNA_512|Name=jgi.p|Nanoce1779_2|668524|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp
CAGAGCAATAACCCATGTTGACTCATTCATGAGCGCTCCTACTACTTCTA
TTCCCATCGTGATGCCCCACTTCACGAGCAGTGGCAGTAGCAGTGCTGGC
AGTCGTCGGACCTTGTTCCTGGTCATGCTGATGCTGGTTGTCCTCGGTGT
GCTGCTCTCCACCGCCCTCTTTGTCCTACGAACGAAGCAACAACAGCAGC
AGAGACAAGATCAGCGGCAGCAATGGCAGCATCGGCAATACTGCGAGGAC
GTAAAGCCCCCCCTTTCAAGCGTGCCTGTCTTCTTCACAGCCGGGGTCAC
GGCGGAGACGCAACGTGCAGCTTACTCTACTTTGAAAGGGACTTTGGAAC
AATACCGGTCGGAATTAGGATTGAGAATAAATGCACTGCATAACATGACT
TATGTGCGGCTGCCGGGATGGCAGGAAGAGGAAGATGATGGGGAGGAGGA
GGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAA
AGCATGCCGGCCTTCGGTCGAAGGCGAGAGCTAATTTGACAGCGAGTTTG
CAAGCACGAATGTGGAAAGAATTCGAGAAAATTCCTGCGTGCTGGCAACA
AAATGAGGACCTCTTAACCCTACTCCTACGTTTTCCTAAGCCGACCTCTG
CCTTGTTACCCGCGGCCCAAGGAACGCCAAAGCAACGACCTAAACAACGA
CAAAAAGAGCAATCGACATCTGTAACACCTACTAGCAGCTCATATAACGA
TGCCATCCAAATCTTTACTCACCTCTATCGAGATTGGACGGATGACGGCC
GTGAGCTCCGCCGCAAGACCTACATGCCCATCCTCCGAGCCGCTGCTCGT
TTATTCCAACCATCCTCGCCAAGCATGGCACGGAATGATGGCATGGTGGA
TGCGATAGAGATAAAGTATATTTTGGTTCCAGGCGCAGGCCTAGGTCGTC
TGGCGTTCGAGCTTGCTTTTGGTCAGCGGCCCTCGCAGCAGCTGCAGCCG
TGCTTCCATGTCACGGCTATGGATATCAGCCCTGTCATGATCGCAGCGAC
GGCGGCTGTGTTAGATGTTGTATTTGCATCAAAGACGGAGGAGGGAGAGG
AGGGGAGAGGAGGGAAAGAGGGCGCAAATTTCTTTTATCCCTTTTTGCAT
GATCCCCTTCTGAATCAGCGTTCGCATGCTCGTCGCTTCCACGCCGCGTC
TTTCCCCGATACGGCAGCTGTGAATCAACTTCAGTCGCATCGAATGAAAG
GAAAACAAAGACATCATGCCACGTCCTTCTTCTCCTCCTCCTCCTCCTCC
TCCTCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCGGCCTCCTTGCCCTC
CTCTTCCCTCGCCCTCGAACTCGGCAACTTCCTCCACCTCCCCCTCCACT
CGTCCTCCTCGTGGTCCCAATCCCAACACGCAATAATCACCTGCTATTTC
CTCGATACAGCCCCGAACCCTCTCTCCTACCTACGCACTATTCACTCCCT
CCTCAAAGAGGGGGGGTATTGGATCAATCTCGGCCCTCTTAACTACCACA
CTACTCTCCCCAACGGCGCCGTGCAACTGACGGTGGAGGAAATAGAAATA
GCAGCGGAAGGAATGGGTTTCCGGAAGATCAAGGAGGGCGAGGACGAGGA
CGGGGAGGAGGAGGAGGGACAGCTGGAATGGTGTGCATATCGGCCAGAGC
CTCCGAGGGTGGGAGGGAAGGAGGGGGAGGGAGAGGGAGGGAGGGAGGAA
GGATCAGCATTTTTGCGTGTAGATGTGTACAAGCCGGTCATGAGTATATT
TCAGAGGATAAAAACGAGGTAGCGACTGCCTTACATGTGACAAGTAAATA
GACAGTGAGACAGAAGGGGAAAATATAGAAGAAATGAAAGGTTCAAGTCA
CAAAGCCGAAAGTAAGAGCGACGATAATAAAATGTCTAACGAACTGTAAG
GGATGCCTCGAACGAGTAAGTCGGTCAATGTCTCCCCAGAAGGGACAAGA
AATATACACTTGATCCCCTCTTAGACGATTTTTTCATGTTTTCTTTTTCG
TTCGTTTTTGTTTTACTCCCTGATTTATCATTAGTAGTTTAACTACGTGT
GTGTATGTGTGACATATCACCTGAAAATAAAGCTATCTTCTTGTCTTTAT
GCTGCTTCACGAAAATATTTGTGTGAAACGCTGCAGTCGCTCACTGCATT
AACAACACACATCCGACCTACCACAATCCCCCACCCTCCCC
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protein sequence of jgi.p|Nanoce1779_2|668524

>mRNA_512-protein ID=mRNA_512-protein|Name=jgi.p|Nanoce1779_2|668524|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MSAPTTSIPIVMPHFTSSGSSSAGSRRTLFLVMLMLVVLGVLLSTALFVL
RTKQQQQQRQDQRQQWQHRQYCEDVKPPLSSVPVFFTAGVTAETQRAAYS
TLKGTLEQYRSELGLRINALHNMTYVRLPGWQEEEDDGEEEEEEEEEEEE
EEEEEEEKHAGLRSKARANLTASLQARMWKEFEKIPACWQQNEDLLTLLL
RFPKPTSALLPAAQGTPKQRPKQRQKEQSTSVTPTSSSYNDAIQIFTHLY
RDWTDDGRELRRKTYMPILRAAARLFQPSSPSMARNDGMVDAIEIKYILV
PGAGLGRLAFELAFGQRPSQQLQPCFHVTAMDISPVMIAATAAVLDVVFA
SKTEEGEEGRGGKEGANFFYPFLHDPLLNQRSHARRFHAASFPDTAAVNQ
LQSHRMKGKQRHHATSFFSSSSSSSSTSSSSSSSSSASLPSSSLALELGN
FLHLPLHSSSSWSQSQHAIITCYFLDTAPNPLSYLRTIHSLLKEGGYWIN
LGPLNYHTTLPNGAVQLTVEEIEIAAEGMGFRKIKEGEDEDGEEEEGQLE
WCAYRPEPPRVGGKEGEGEGGREEGSAFLRVDVYKPVMSIFQRIKTR*
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mRNA from alignment at scaffold_3:1238976..1241216-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_512 ID=mRNA_512|Name=jgi.p|Nanoce1779_2|668524|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at scaffold_3:1238976..1241216- (Nannochloropsis oceanica)
CAGAGCAATAACCCATGTTGACTCATTCATGAGCGCTCCTACTACTTCTA
TTCCCATCGTGATGCCCCACTTCACGAGCAGTGGCAGTAGCAGTGCTGGC
AGTCGTCGGACCTTGTTCCTGGTCATGCTGATGCTGGTTGTCCTCGGTGT
GCTGCTCTCCACCGCCCTCTTTGTCCTACGAACGAAGCAACAACAGCAGC
AGAGACAAGATCAGCGGCAGCAATGGCAGCATCGGCAATACTGCGAGGAC
GTAAAGCCCCCCCTTTCAAGCGTGCCTGTCTTCTTCACAGCCGGGGTCAC
GGCGGAGACGCAACGTGCAGCTTACTCTACTTTGAAAGGGACTTTGGAAC
AATACCGGTCGGAATTAGGATTGAGAATAAATGCACTGCATAACATGACT
TATGTGCGGCTGCCGGGATGGCAGGAAGAGGAAGATGATGGGGAGGAGGA
GGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAA
AGCATGCCGGCCTTCGGTCGAAGGCGAGAGCTAATTTGACAGCGAGTTTG
CAAGCACGAATGTGGAAAGAATTCGAGAAAATTCCTGCGTGCTGGCAACA
AAATGAGGACCTCTTAACCCTACTCCTACGTTTTCCTAAGCCGACCTCTG
CCTTGTTACCCGCGGCCCAAGGAACGCCAAAGCAACGACCTAAACAACGA
CAAAAAGAGCAATCGACATCTGTAACACCTACTAGCAGCTCATATAACGA
TGCCATCCAAATCTTTACTCACCTCTATCGAGATTGGACGGATGACGGCC
GTGAGCTCCGCCGCAAGACCTACATGCCCATCCTCCGAGCCGCTGCTCGT
TTATTCCAACCATCCTCGCCAAGCATGGCACGGAATGATGGCATGGTGGA
TGCGATAGAGATAAAGTATATTTTGGTTCCAGGCGCAGGCCTAGGTCGTC
TGGCGTTCGAGCTTGCTTTTGGTCAGCGGCCCTCGCAGCAGCTGCAGCCG
TGCTTCCATGTCACGGCTATGGATATCAGCCCTGTCATGATCGCAGCGAC
GGCGGCTGTGTTAGATGTTGTATTTGCATCAAAGACGGAGGAGGGAGAGG
AGGGGAGAGGAGGGAAAGAGGGCGCAAATTTCTTTTATCCCTTTTTGCAT
GATCCCCTTCTGAATCAGCGTTCGCATGCTCGTCGCTTCCACGCCGCGTC
TTTCCCCGATACGGCAGCTGTGAATCAACTTCAGTCGCATCGAATGAAAG
GAAAACAAAGACATCATGCCACGTCCTTCTTCTCCTCCTCCTCCTCCTCC
TCCTCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCGGCCTCCTTGCCCTC
CTCTTCCCTCGCCCTCGAACTCGGCAACTTCCTCCACCTCCCCCTCCACT
CGTCCTCCTCGTGGTCCCAATCCCAACACGCAATAATCACCTGCTATTTC
CTCGATACAGCCCCGAACCCTCTCTCCTACCTACGCACTATTCACTCCCT
CCTCAAAGAGGGGGGGTATTGGATCAATCTCGGCCCTCTTAACTACCACA
CTACTCTCCCCAACGGCGCCGTGCAACTGACGGTGGAGGAAATAGAAATA
GCAGCGGAAGGAATGGGTTTCCGGAAGATCAAGGAGGGCGAGGACGAGGA
CGGGGAGGAGGAGGAGGGACAGCTGGAATGGTGTGCATATCGGCCAGAGC
CTCCGAGGGTGGGAGGGAAGGAGGGGGAGGGAGAGGGAGGGAGGGAGGAA
GGATCAGCATTTTTGCGTGTAGATGTGTACAAGCCGGTCATGAGTATATT
TCAGAGGATAAAAACGAGGTAGCGACTGCCTTACATGTGACAAGTAAATA
GACAGTGAGACAGAAGGGGAAAATATAGAAGAAATGAAAGGTTCAAGTCA
CAAAGCCGAAAGTAAGAGCGACGATAATAAAATGTCTAACGAACTGTAAG
GGATGCCTCGAACGAGTAAGTCGGTCAATGTCTCCCCAGAAGGGACAAGA
AATATACACTTGATCCCCTCTTAGACGATTTTTTCATGTTTTCTTTTTCG
TTCGTTTTTGTTTTACTCCCTGATTTATCATTAGTAGTTTAACTACGTGT
GTGTATGTGTGACATATCACCTGAAAATAAAGCTATCTTCTTGTCTTTAT
GCTGCTTCACGAAAATATTTGTGTGAAACGCTGCAGTCGCTCACTGCATT
AACAACACACATCCGACCTACCACAATCCCCCACCCTCCCC
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Coding sequence (CDS) from alignment at scaffold_3:1238976..1241216-

>mRNA_512 ID=mRNA_512|Name=jgi.p|Nanoce1779_2|668524|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at scaffold_3:1238976..1241216- (Nannochloropsis oceanica)
ATGAGCGCTCCTACTACTTCTATTCCCATCGTGATGCCCCACTTCACGAG
CAGTGGCAGTAGCAGTGCTGGCAGTCGTCGGACCTTGTTCCTGGTCATGC
TGATGCTGGTTGTCCTCGGTGTGCTGCTCTCCACCGCCCTCTTTGTCCTA
CGAACGAAGCAACAACAGCAGCAGAGACAAGATCAGCGGCAGCAATGGCA
GCATCGGCAATACTGCGAGGACGTAAAGCCCCCCCTTTCAAGCGTGCCTG
TCTTCTTCACAGCCGGGGTCACGGCGGAGACGCAACGTGCAGCTTACTCT
ACTTTGAAAGGGACTTTGGAACAATACCGGTCGGAATTAGGATTGAGAAT
AAATGCACTGCATAACATGACTTATGTGCGGCTGCCGGGATGGCAGGAAG
AGGAAGATGATGGGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAA
GAGGAGGAGGAGGAGGAGGAAAAGCATGCCGGCCTTCGGTCGAAGGCGAG
AGCTAATTTGACAGCGAGTTTGCAAGCACGAATGTGGAAAGAATTCGAGA
AAATTCCTGCGTGCTGGCAACAAAATGAGGACCTCTTAACCCTACTCCTA
CGTTTTCCTAAGCCGACCTCTGCCTTGTTACCCGCGGCCCAAGGAACGCC
AAAGCAACGACCTAAACAACGACAAAAAGAGCAATCGACATCTGTAACAC
CTACTAGCAGCTCATATAACGATGCCATCCAAATCTTTACTCACCTCTAT
CGAGATTGGACGGATGACGGCCGTGAGCTCCGCCGCAAGACCTACATGCC
CATCCTCCGAGCCGCTGCTCGTTTATTCCAACCATCCTCGCCAAGCATGG
CACGGAATGATGGCATGGTGGATGCGATAGAGATAAAGTATATTTTGGTT
CCAGGCGCAGGCCTAGGTCGTCTGGCGTTCGAGCTTGCTTTTGGTCAGCG
GCCCTCGCAGCAGCTGCAGCCGTGCTTCCATGTCACGGCTATGGATATCA
GCCCTGTCATGATCGCAGCGACGGCGGCTGTGTTAGATGTTGTATTTGCA
TCAAAGACGGAGGAGGGAGAGGAGGGGAGAGGAGGGAAAGAGGGCGCAAA
TTTCTTTTATCCCTTTTTGCATGATCCCCTTCTGAATCAGCGTTCGCATG
CTCGTCGCTTCCACGCCGCGTCTTTCCCCGATACGGCAGCTGTGAATCAA
CTTCAGTCGCATCGAATGAAAGGAAAACAAAGACATCATGCCACGTCCTT
CTTCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCCTCCTCCTCCTCCT
CCTCCTCGGCCTCCTTGCCCTCCTCTTCCCTCGCCCTCGAACTCGGCAAC
TTCCTCCACCTCCCCCTCCACTCGTCCTCCTCGTGGTCCCAATCCCAACA
CGCAATAATCACCTGCTATTTCCTCGATACAGCCCCGAACCCTCTCTCCT
ACCTACGCACTATTCACTCCCTCCTCAAAGAGGGGGGGTATTGGATCAAT
CTCGGCCCTCTTAACTACCACACTACTCTCCCCAACGGCGCCGTGCAACT
GACGGTGGAGGAAATAGAAATAGCAGCGGAAGGAATGGGTTTCCGGAAGA
TCAAGGAGGGCGAGGACGAGGACGGGGAGGAGGAGGAGGGACAGCTGGAA
TGGTGTGCATATCGGCCAGAGCCTCCGAGGGTGGGAGGGAAGGAGGGGGA
GGGAGAGGGAGGGAGGGAGGAAGGATCAGCATTTTTGCGTGTAGATGTGT
ACAAGCCGGTCATGAGTATATTTCAGAGGATAAAAACGAGGTAG
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Synonyms
Publications