jgi.p|Nanoce1779_2|658638, mRNA_9797 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|658638
Unique Name	mRNA_9797
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	839
Alignment location	scaffold_32:94684..95522 -

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Properties


Property Name	Value
TranscriptId	658724
Track	FilteredModels2
ProteinId	658638

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:94684..95522 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|658638	gene_9797	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|658638	mRNA_9797-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9797	CDS_9797	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_32:94684..95522-
coding sequence from alignment at scaffold_32:94684..95522-

mRNA sequence

>mRNA_9797 ID=mRNA_9797|Name=jgi.p|Nanoce1779_2|658638|organism=Nannochloropsis oceanica|type=mRNA|length=839bp
ATGGCGTCGACTGCGAATTCCCCGCTTACTGAGCACTCGGATGTCAAGTT
TTACCAACCGATTGCACCGCTGGGCGAGGCCCCCCTCCCGCTACAAGAGA
TCCAAGCCGGTGTGATGGGGTTTGTGGTGGGACTGCTGCCTGGCAAACGC
TTCAAGATCATGAATAAGTACCTTCCGGTAAGAGATACGAGAAGTGCGCA
CTTGGCTACCGTTCGCGTGAAAGATGTAGCATCTTTGAATAACATTCTTT
CTCTCCATTCACTCATTCTCCCCTTACAACAGAGTACAGAGAAGCAGCGA
AGAGCGTCGAAAGAGGACTTGTCGGGTTTAACGGAGGAGGAGAGAGCGAA
TCGACGCAAGATACGCGCACAAGTGTACAATCGCTCGTCTCGCCACCGCC
GCGACCGGCTACAGGGTGACCTACGCAGCGATGTGAGTCGCATGCGAATC
TATAAGAATATTGTTGACCATGCACCGGACATAATGTGTGTCATCTCCCC
CGACTTTCAGTGCCAAGTTCTGTACATCAACAAGGCCGCTCAATGCGTCC
TTCATATTGAGCCCAACCAGCTGCTTGGGTCTAGCTTCTGGAACATTGTC
CACATGGAAGACAAGATGGCGCTTTTCAGGTCCCTTACCAGTGTCACCAT
TTTCAAGTCGGCCGGGAAAATGGAAAAGCTTTGCTGTCGTGTCGTTACTA
ATTCCCCCAGTATCTATGTGTCTGTTCGGATGATGCTAGCAAATGGGATT
CAGGGCATTATCTGCGTAATGTACCATGATGTTGCTCTGCCTGCCAATTT
GTGCGTGTCGCCTAATTAAATGCGGTGTGTAATCTTGTG

protein sequence of jgi.p|Nanoce1779_2|658638

>mRNA_9797-protein ID=mRNA_9797-protein|Name=jgi.p|Nanoce1779_2|658638|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MASTANSPLTEHSDVKFYQPIAPLGEAPLPLQEIQAGVMGFVVGLLPGKR
FKIMNKYLPVRDTRSAHLATVRVKDVASLNNILSLHSLILPLQQSTEKQR
RASKEDLSGLTEEERANRRKIRAQVYNRSSRHRRDRLQGDLRSDVSRMRI
YKNIVDHAPDIMCVISPDFQCQVLYINKAAQCVLHIEPNQLLGSSFWNIV
HMEDKMALFRSLTSVTIFKSAGKMEKLCCRVVTNSPSIYVSVRMMLANGI
QGIICVMYHDVALPANLCVSPN*

mRNA from alignment at scaffold_32:94684..95522-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9797 ID=mRNA_9797|Name=jgi.p|Nanoce1779_2|658638|organism=Nannochloropsis oceanica|type=mRNA|length=839bp|location=Sequence derived from alignment at scaffold_32:94684..95522- (Nannochloropsis oceanica)
ATGGCGTCGACTGCGAATTCCCCGCTTACTGAGCACTCGGATGTCAAGTT
TTACCAACCGATTGCACCGCTGGGCGAGGCCCCCCTCCCGCTACAAGAGA
TCCAAGCCGGTGTGATGGGGTTTGTGGTGGGACTGCTGCCTGGCAAACGC
TTCAAGATCATGAATAAGTACCTTCCGGTAAGAGATACGAGAAGTGCGCA
CTTGGCTACCGTTCGCGTGAAAGATGTAGCATCTTTGAATAACATTCTTT
CTCTCCATTCACTCATTCTCCCCTTACAACAGAGTACAGAGAAGCAGCGA
AGAGCGTCGAAAGAGGACTTGTCGGGTTTAACGGAGGAGGAGAGAGCGAA
TCGACGCAAGATACGCGCACAAGTGTACAATCGCTCGTCTCGCCACCGCC
GCGACCGGCTACAGGGTGACCTACGCAGCGATGTGAGTCGCATGCGAATC
TATAAGAATATTGTTGACCATGCACCGGACATAATGTGTGTCATCTCCCC
CGACTTTCAGTGCCAAGTTCTGTACATCAACAAGGCCGCTCAATGCGTCC
TTCATATTGAGCCCAACCAGCTGCTTGGGTCTAGCTTCTGGAACATTGTC
CACATGGAAGACAAGATGGCGCTTTTCAGGTCCCTTACCAGTGTCACCAT
TTTCAAGTCGGCCGGGAAAATGGAAAAGCTTTGCTGTCGTGTCGTTACTA
ATTCCCCCAGTATCTATGTGTCTGTTCGGATGATGCTAGCAAATGGGATT
CAGGGCATTATCTGCGTAATGTACCATGATGTTGCTCTGCCTGCCAATTT
GTGCGTGTCGCCTAATTAAATGCGGTGTGTAATCTTGTG

Coding sequence (CDS) from alignment at scaffold_32:94684..95522-

>mRNA_9797 ID=mRNA_9797|Name=jgi.p|Nanoce1779_2|658638|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_32:94684..95522- (Nannochloropsis oceanica)
ATGGCGTCGACTGCGAATTCCCCGCTTACTGAGCACTCGGATGTCAAGTT
TTACCAACCGATTGCACCGCTGGGCGAGGCCCCCCTCCCGCTACAAGAGA
TCCAAGCCGGTGTGATGGGGTTTGTGGTGGGACTGCTGCCTGGCAAACGC
TTCAAGATCATGAATAAGTACCTTCCGGTAAGAGATACGAGAAGTGCGCA
CTTGGCTACCGTTCGCGTGAAAGATGTAGCATCTTTGAATAACATTCTTT
CTCTCCATTCACTCATTCTCCCCTTACAACAGAGTACAGAGAAGCAGCGA
AGAGCGTCGAAAGAGGACTTGTCGGGTTTAACGGAGGAGGAGAGAGCGAA
TCGACGCAAGATACGCGCACAAGTGTACAATCGCTCGTCTCGCCACCGCC
GCGACCGGCTACAGGGTGACCTACGCAGCGATGTGAGTCGCATGCGAATC
TATAAGAATATTGTTGACCATGCACCGGACATAATGTGTGTCATCTCCCC
CGACTTTCAGTGCCAAGTTCTGTACATCAACAAGGCCGCTCAATGCGTCC
TTCATATTGAGCCCAACCAGCTGCTTGGGTCTAGCTTCTGGAACATTGTC
CACATGGAAGACAAGATGGCGCTTTTCAGGTCCCTTACCAGTGTCACCAT
TTTCAAGTCGGCCGGGAAAATGGAAAAGCTTTGCTGTCGTGTCGTTACTA
ATTCCCCCAGTATCTATGTGTCTGTTCGGATGATGCTAGCAAATGGGATT
CAGGGCATTATCTGCGTAATGTACCATGATGTTGCTCTGCCTGCCAATTT
GTGCGTGTCGCCTAATTAA

Synonyms

Publications