jgi.p|Nanoce1779_2|674022, mRNA_9519 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674022
Unique NamemRNA_9519
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2336
Alignment locationscaffold_34:227861..230723 -

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Properties
Property NameValue
TranscriptId674108
TrackFilteredModels2
ProteinId674022
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:227861..230723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674022gene_9519Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674022mRNA_9519-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9519CDS_9519Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9519 ID=mRNA_9519|Name=jgi.p|Nanoce1779_2|674022|organism=Nannochloropsis oceanica|type=mRNA|length=2336bp
AAAAAAACCAAAAACCAGAGAAATAAAAACTTCCAAAATGCGCTTTTGCT
CTTCCGTCTTCCTGTTGTGTGTGATAATTCTTTGTACATTGTTCTTGTCA
CATGCACACACATGTAATCGACCAGAGGCTGGCCCCAATCACTGATTGGT
CTCTACCTGAGGGACTCTGAGCGCCCCATGGATTCCCTAGCTTCTTTGCG
CTATGCTATCCTATGGTAGCACGATTTGGTCCAAGTGTGGCGCGATGCAA
CGCGTCCTTCGTTAGAGGGCTACAGTGACCACAGCACGAAGGGAACCACT
GCGCTGTCTCGGCCCTCTCACATCACGGCCCTCTTTTTTCCAACATGTGC
CGCTGACCTCACCGCTCTCCACATACATGGAGAACTCGCCTGCCACCAGG
CAGATACAATGTCGTCGAGCATTTGCACCTTACCCCTTTTTTTCTGGCAC
TATCCTCCTCTCCATAATCTTCCCTCTTCTTTCTACCCCCCTTCCACACC
TTCCCTATCTCCTTCCCCCTTTCCCTTTCTCCTTCCCCCTTTTCTCCTGT
CTCCTCCCTCTTCTCTCTATAAGCTTCCCTCCTTCCGTCTCTCTCCCTCC
CCTTTATCTCCCCGCACCTCAACTCCCTTATTCTTCGTCTCATACCTTCG
AAATGGCTTTGATCCCTTCCTCCCTCTTCTCCCTTCCTTCTGCCTTTTGC
CTTAGCCTTCCTCCAAACGATGTCTCCTCACGTTCTTCTATTCAAACCCT
TCCCCCTTTTCCGCACCTTCCTGGCCGCCTTCCCCATGCTCTCTTCTTCT
TCATTTTCTATTTCCCTTATCCCCCTCTTCATTTTTCCCTTTCTCTCCTG
ACCTTCCTTCCACGTTTTCCCTCATCTCTCTCCGTTTCACGACTTCCTTG
CCATCTGCTCTCCTTGTATATATTTCTCCTGCTTTTGTGGAAATTCTGGA
CAATTGAGATCATTTTTGATATTCGAAATTCAATCCCAAAGCAATGCAGT
CGTTAAAAGAACGCACTGTGTCCTCTCCCCCCTTCTCATCGTCCTCATCC
CTTTTCTCCGTCACATGCCAGCCGTGAGTGCATGCATTGCGCATCCCCCC
CACCGAACCCGCACACGTCCACAATTTTGTACACAGAATATTCAGAATCA
TTTGTGCTCGCCTGCTCTCTCTGCTTCTTCCTTCCTCCTCGTCCCAAATT
GTGCTTCATTCAGATACTGAAGGCTCTATACAGCAGCCGCCGTATGGATC
AAAGCAATGCACTCATTTCCAACAATATATTTCAACTCACACCACCACAG
CAAACACACGTGACACATCATGCGTAGCGCTTTTTCTCTCCTTGCCCTCG
GCACCACGTTTGTCCTGACTGCGGCTCAGCCGATGGTGACCCTCACCTCC
ATCAAGGCTGTCGACGTGGCCAGGGAGAACAAGGACCAATGGAGTCTCAA
GGGCTACGTCGACGACCCTACCGGGACGTATGTTCCCTTGGTGGATGACA
TTGGCTTGAACGTGAGGCTTGTGGACTCGAACAACGTCAACATTAGTGCC
GTGAACTTTGCCCCTAGTGAGTGCAACCCGCTCCTCAACGATAAGGGAAC
CGTTTGCAAGGTTACGGGTGCCCGTTACACGCTGAGGAAGATCAATAAGC
TCCCCAAGAGCGCCATGATCTCGGCGCAGAAGAAGCACAACAAGACCAGC
AGCGAATCTTTCTATTACAAGCTTTCGGGCGTTTTCCGCCGTCAGGAGTT
CACGGCCACTGTGGTGACGCCTCTGACTGTTATCTTCGCTGCGGGCAACG
TTGGCACCCTTGCTGTCACCAACACGGACTGTACAGAGAAAGATGGAGCC
AAATCCACCAGGTATCCTTTTGGGGGAATCGCGTGAAGGAGAGCAACACG
AAGACCCTGTTACCCACCTTCTTCTCTTTCTTTTCATGATCTATTTCTTC
TTCTCCTTCATCACGTGAAACTCAACCATCTTGCATTGACCATCCGCCAG
CAAAATGATGATGTAACTCGGCCGTGTGAGAGGCAGAAGAGAAGTAGAAT
GTAGCCTCGCACTGATTGTTGTCGTTGTTTGGCAGAGCAGGAATGGATGG
AGGGCGGGAAGGAGAGAAGGGTGGATAGTTAATCGTATATTAAAAAGGAG
GGAAATATACAGATAGCGGATAGCACTTTGAAAGGAGGAAAAAGAAGGCG
CCGAGAAAGCAGAAGTGTAATCGTGAAAGAGCACACAGAGTCGACAGCAT
AATCAACAGGAAAAAGACAGACGGGAAAGACAAGGGCGTGCTGCCGATGA
AGAGAAATGAAAATCAAATTTGAAATAAGAGGAATC
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protein sequence of jgi.p|Nanoce1779_2|674022

>mRNA_9519-protein ID=mRNA_9519-protein|Name=jgi.p|Nanoce1779_2|674022|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MENSPATRQIQCRRAFAPYPFFSGTILLSIIFPLLSTPLPHLPYLLPPFP
FSFPLFSCLLPLLSISFPPSVSLPPLYLPAPQLPYSSSHTFEMALIPSSL
FSLPSAFCLSLPPNDVSSRSSIQTLPPFPHLPGRLPHALFFFIFYFPYPP
LHFSLSLLTFLPRFPSSLSVSRLPCHLLSLYIFLLLLWKFWTIEIIFDIR
NSIPKQCSR*
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mRNA from alignment at scaffold_34:227861..230723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9519 ID=mRNA_9519|Name=jgi.p|Nanoce1779_2|674022|organism=Nannochloropsis oceanica|type=mRNA|length=2863bp|location=Sequence derived from alignment at scaffold_34:227861..230723- (Nannochloropsis oceanica)
AAAAAAACCAAAAACCAGAGAAATAAAAACTTCCAAAATGCGCTTTTGCT
CTTCCGTCTTCCTGTTGTGTGTGATAATTCTTTGTACATTGTTCTTGTCA
CATGCACACACATGTAATCGACCAGAGGCTGGCCCCAATCACTGATTGGT
CTCTACCTGAGGGACTCTGAGCGCCCCATGGATTCCCTAGCTTCTTTGCG
CTATGCTATCCTATGGTAGCACGATTTGGTCCAAGTGTGGCGCGATGCAA
CGCGTCCTTCGTTAGAGGGCTACAGTGACCACAGCACGAAGGGAACCACT
GCGCTGTCTCGGCCCTCTCACATCACGGCCCTCTTTTTTCCAACATGTGC
CGCTGACCTCACCGCTCTCCACATACATGGAGAACTCGCCTGCCACCAGG
CAGATACAATGTCGTCGAGCATTTGCACCTTACCCCTTTTTTTCTGGCAC
TATCCTCCTCTCCATAATCTTCCCTCTTCTTTCTACCCCCCTTCCACACC
TTCCCTATCTCCTTCCCCCTTTCCCTTTCTCCTTCCCCCTTTTCTCCTGT
CTCCTCCCTCTTCTCTCTATAAGCTTCCCTCCTTCCGTCTCTCTCCCTCC
CCTTTATCTCCCCGCACCTCAACTCCCTTATTCTTCGTCTCATACCTTCG
AAATGGCTTTGATCCCTTCCTCCCTCTTCTCCCTTCCTTCTGCCTTTTGC
CTTAGCCTTCCTCCAAACGATGTCTCCTCACGTTCTTCTATTCAAACCCT
TCCCCCTTTTCCGCACCTTCCTGGCCGCCTTCCCCATGCTCTCTTCTTCT
TCATTTTCTATTTCCCTTATCCCCCTCTTCATTTTTCCCTTTCTCTCCTG
ACCTTCCTTCCACGTTTTCCCTCATCTCTCTCCGTTTCACGACTTCCTTG
CCATCTGCTCTCCTTGTATATATTTCTCCTGCTTTTGTGGAAATTCTGGA
CAATTGAGATCATTTTTGATATTCGAAATTCAATCCCAAAGCAATGCAGT
CGTTAAAAGAACGCACTGTGTCCTCTCCCCCCTTCTCATCGTCCTCATCC
CTTTTCTCCGTCACATGCCAGCCGTGAGTGCATGCATTGCGCATCCCCCC
CACCGAACCCGCACACGTCCACAATTTTGTACACAGAATATTCAGAATCA
TTTGTGCTCGCCTGCTCTCTCTGCTTCTTCCTTCCTCCTCGTCCCAAATT
GTGCTTCATTCAGATACTGAAGGCTCTATACAGCAGCCGCCGTATGGATC
AAAGCAATGCACTCATTTCCAACAATATATTTCAACTCACACCACCACAG
CAAACACACGTGACACATCATGCGTAGCGCTTTTTCTCTCCTTGCCCTCG
GCACCACGTTTGTCCTGACTGCGGCTCAGCCGATGGTGACCCTCACCTCC
ATCAAGGCTGTCGACGTGGCCAGGGAGAACAAGGACCAATGGAGTCTCAA
GGGCTACGTCGACGACCCTACCGGGACGTATGTTCCCTTGGTGGATGACA
TTGGCTTGAACGTGAGGCTTGTGGACTCGAACAACGTCAACATTAGTGCC
GTGAACTTTGCCCCTAGTGAGTGCAACCCGCTCCTCAACGATAAGGGAAC
CGTTTGCAAGGTTACGGGTGCCCGTTACACGCTGAGGAAGATCAATAAGC
TCCCCAAGAGCGCCATGATCTCGGCGCAGAAGAAGCACAACAAGACCAGC
AGCGAATCTTTCTATTACAAGCTTTCGGGCGTTTTCCGCCGTCAGGAGTT
CACGGCCACTGTGGTGACGCCTCTGACTGTTATCTTCGCTGCGGGCAACG
TTGGCACCCTTGCTGTCACCAACACGGACTGTACAGAGAAAGATGGAGCC
AAATCCACCAGGTACCTCTGCAAGCCCGGTGCCTCTACCCCCCGCCCCTA
CCGGGCTCCCATAAACGGCCTTATAACGGATCATAAGCATGACAAGTTTC
ATGTCTCGCTCCCCGTTTCTAATGTGTTTTTGATGATAAGGTTCTGTATG
CCCCTTGTCAGTCTGGAAGCTCCACCTTCCATACGTGATGTGTCGACTTG
TCTAGGCGTGTGACAATGCCTTTGTTCGTGTTTGTGGTTGTGTTGTGTAT
GTGTTTTTATTTGTTGCTCGTGTGCCACTTATGTTGAGAGCTTCAATTGC
CTCATACGTCCACCAGAGGCTTCTTTGAAGCCTGCATGCGGGAGGAGGAA
AACATGGCTCAATTTTCCGTGTAGACAGGTAACTAAAGTCCAAAATGTAG
CCGGTGAATCAAGATAGTGCAGACGCTTCTATCATTCTTTCTTCCATGCT
TCTTCTTCTTTGACTTCGTCTTCGTCTGCGTCTTTTTTCCTTTCTTGCCC
CCGCTCCCGGTCCTCCCCCTCTCCCCCCCCTCCTCCAGGTATCCTTTTGG
GGGAATCGCGTGAAGGAGAGCAACACGAAGACCCTGTTACCCACCTTCTT
CTCTTTCTTTTCATGATCTATTTCTTCTTCTCCTTCATCACGTGAAACTC
AACCATCTTGCATTGACCATCCGCCAGCAAAATGATGATGTAACTCGGCC
GTGTGAGAGGCAGAAGAGAAGTAGAATGTAGCCTCGCACTGATTGTTGTC
GTTGTTTGGCAGAGCAGGAATGGATGGAGGGCGGGAAGGAGAGAAGGGTG
GATAGTTAATCGTATATTAAAAAGGAGGGAAATATACAGATAGCGGATAG
CACTTTGAAAGGAGGAAAAAGAAGGCGCCGAGAAAGCAGAAGTGTAATCG
TGAAAGAGCACACAGAGTCGACAGCATAATCAACAGGAAAAAGACAGACG
GGAAAGACAAGGGCGTGCTGCCGATGAAGAGAAATGAAAATCAAATTTGA
AATAAGAGGAATC
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Coding sequence (CDS) from alignment at scaffold_34:227861..230723-

>mRNA_9519 ID=mRNA_9519|Name=jgi.p|Nanoce1779_2|674022|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_34:227861..230723- (Nannochloropsis oceanica)
ATGGAGAACTCGCCTGCCACCAGGCAGATACAATGTCGTCGAGCATTTGC
ACCTTACCCCTTTTTTTCTGGCACTATCCTCCTCTCCATAATCTTCCCTC
TTCTTTCTACCCCCCTTCCACACCTTCCCTATCTCCTTCCCCCTTTCCCT
TTCTCCTTCCCCCTTTTCTCCTGTCTCCTCCCTCTTCTCTCTATAAGCTT
CCCTCCTTCCGTCTCTCTCCCTCCCCTTTATCTCCCCGCACCTCAACTCC
CTTATTCTTCGTCTCATACCTTCGAAATGGCTTTGATCCCTTCCTCCCTC
TTCTCCCTTCCTTCTGCCTTTTGCCTTAGCCTTCCTCCAAACGATGTCTC
CTCACGTTCTTCTATTCAAACCCTTCCCCCTTTTCCGCACCTTCCTGGCC
GCCTTCCCCATGCTCTCTTCTTCTTCATTTTCTATTTCCCTTATCCCCCT
CTTCATTTTTCCCTTTCTCTCCTGACCTTCCTTCCACGTTTTCCCTCATC
TCTCTCCGTTTCACGACTTCCTTGCCATCTGCTCTCCTTGTATATATTTC
TCCTGCTTTTGTGGAAATTCTGGACAATTGAGATCATTTTTGATATTCGA
AATTCAATCCCAAAGCAATGCAGTCGTTAA
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Synonyms
Publications