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Properties
| Property Name | Value |
|---|
| TranscriptId | 560357 |
| Track | FilteredModels2 |
| ProteinId | 560271 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_35 | supercontig | scaffold_35:142797..145524 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9345 ID=mRNA_9345|Name=jgi.p|Nanoce1779_2|560271|organism=Nannochloropsis oceanica|type=mRNA|length=2479bp
TTACTCTCTCTGCACGACCTCCAAGCAAGCAGACCCATTTCAAACACGCT
CCTGGGCTCCTCCTCCCCCTCCTCCCCCTCCTTCTTCGCCCGTGTTCAAG
GACAGGTTAAGCAGAGAAATGGGTGAGGCCTAGGAAAGGGCGCACGCGAG
ACAATTAAATGTAATACAAGGCCCAAAACATACGAAGATTGCATGCACAT
ATTTATCTTGCTTTATTTCAAGTTTGCTTCTTTCATATCACATATCACAT
AGTACCTTGGTTGGATAAAAAAATATAGTTTTGGAGGCAGCAATTATGGC
CTACATCTTTCCTCCGCGTGTAAAGCAGGTACCGAAAGGCGTACCCACAG
ATCCAAACTATCATCAAGCCATGTCCCACATGTCCCCGCCTCTTATATTA
TTGCCGCCACGGTGCGCCTGGTTCATGCCAGCTGCAACGTCACACAGTAA
ATTGTTGCTAGGAAATGTCGAGCACTATTTCGTCTTGCGCTGAGTAATGT
AGTAATCAGAGTATCGCAGGAAGAAGCGAGGTATTTGTGGAGGGTCGGTG
GAAAATGCCTTCGAGGTGGGTTTTCACAAGGGCCAGAGGAGACCCGAATC
GAGATCCTGAGGGTACTGCTCGAGGTTGAATCCTTTTTCGAGGAACACTC
GATCAATGGCACATTTACAAGCTACAGTGTGCCCGTTTGACGCAAGTTTA
GGAGGATATCTTCATTGTAATACGCATTACAACTAGATCGAGGGGCAGCC
ACGTGTGTCCAGAGTGCAAGGAGCCTTGGAAGAGGCAAGGACCGACGCCA
AGTTCCAAGGAGACGTACTAGTACGCCCTCAACTTACGTACCTACACCAC
ACACACAGCCATGAAGGAGCAGGCAGCAGACATCCCCACAGCACCACTAC
CACCACACCGGCGATGGATCCACGATATGGAAGCCGTAAGCTGTCGGGGC
TGCCGAGCGCCATTCACTTCCCTCGCCCGTCGGAAGCACCACTGCCGGGC
TTGCGGGCGCGTCTTCTGCTTGGCATGCACACGACACAAACTCTTCATCC
CGCCCGCCGACGTAATCCGTCCACGCAAAACCCCCGCCGCTGCCGTTATC
CCGCTTAACCTCGATCCTTATTTGCCCCAGCGCGTCTGCGACACTTGCGC
CTCCCTCCTCCTCCCCCTCCAACCTGCCCTCCGCCTCACCAGCAGCAAAG
CCACACAAGCCCTCCACATTGACCGTCGCTCTTGGGCAAGATATTTCAAT
CATCCCGTGCAATTCTCACTGGGAGAAGAAATCAAAAAGGCCTCTTACAC
TCTGTGTAATTTTACGGGAGACAGTGCCTTGGGAGGGAGAGACAGCATTC
CGGGAGAGCTCTTGTGGGGAGCCAAGGGCCTGGCGTTTCTGACGGTGGTC
AAGGCAGGCATGTTTGTCACGGCTCGAATAGGGACAGGGCTGGTGATTGC
ACGGAGGGGGAGGGTAAGGTGGTCGGCGCCGTCGGCGTTGGGGTGCACGG
GAGTGGGATACGGATTTTCGTTCGGAGTGGAAGTGACGGATCTGCTCGTC
ATCCTCTCTTCCCAAGAAGCCGTCAATGCCTTCTCTACCCGCGCACAAAT
CTCTCTCGGGACGGAGCTAGGGATCGCCCTCGGTCCCCTGGGCCGCACCG
CCGCCACTGACCTCCACTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGCAGGCT
GGGAGCGGGGTTCAGCTACGGCCATAGCAGAGGTGCTTTTATGGGGGTGT
CAGTGGAGGGGTCTGTACTAACGGCACGGGAAAGGGTAAACCAAGAGTTT
TATGGAATGAAAGACGTGACGGTAGGAGGTATTTTAAGTGGGGAGATACC
GCCACCATTGGCCGCGTTTCCCTTGTATAAAGCCTTGGAAGAGGTGATGG
GGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCGTGTGGTACGAGG
TGGGACTCAAGGAACGGCATGCATGGGCGGCAACGATCCAAAACGGGGAG
GGACGGAGGGGAGGAAAGAAGGCAAGAGGAGGAGGAGGAGGATGATGGGG
AGGATGAGGAGGTGGGAGGGTTGTTGAGAGGGATGGGTGGGGAGATGATG
ACCTTTCAGGTAATGGGGGAGTAGTGGGAGGTGTGGGGGTGGAGGGAAAA
CGGGAGGAGGGGGAGGACGAGGAAGACGAAGAGGAGGGGGAGAAGGACGA
AGACGAAGAGGAGAGGGAGAAGGAGGAAGGGGGCGTGTACAGAACACAGG
AGGAAAAAACAAGAAACATGCACCACAAGGCCTGCTTTCGGTTGCTTTTT
TTGTTCCAATCTCTCTTTCCTTTCCTTCTCTCCCGTCCTCCTTTCACCCT
TCCTTTCCCCCTCTTCTACGAGGCAAGCAAGCAAGAAGGGAGGGAAGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|560271 >mRNA_9345-protein ID=mRNA_9345-protein|Name=jgi.p|Nanoce1779_2|560271|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MKEQAADIPTAPLPPHRRWIHDMEAVSCRGCRAPFTSLARRKHHCRACGR
VFCLACTRHKLFIPPADVIRPRKTPAAAVIPLNLDPYLPQRVCDTCASLL
LPLQPALRLTSSKATQALHIDRRSWARYFNHPVQFSLGEEIKKASYTLCN
FTGDSALGGRDSIPGELLWGAKGLAFLTVVKAGMFVTARIGTGLVIARRG
RVRWSAPSALGCTGVGYGFSFGVEVTDLLVILSSQEAVNAFSTRAQISLG
TELGIALGPLGRTAATDLHYSSSSSSSSSSSSSSSSSSSRRRRRSRLGAG
FSYGHSRGAFMGVSVEGSVLTARERVNQEFYGMKDVTVGGILSGEIPPPL
AAFPLYKALEEVMGEGEGGREGGREACGTRWDSRNGMHGRQRSKTGRDGG
EERRQEEEEEDDGEDEEVGGLLRGMGGEMMTFQVMGE* back to topmRNA from alignment at scaffold_35:142797..145524- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9345 ID=mRNA_9345|Name=jgi.p|Nanoce1779_2|560271|organism=Nannochloropsis oceanica|type=mRNA|length=2728bp|location=Sequence derived from alignment at scaffold_35:142797..145524- (Nannochloropsis oceanica)
TTACTCTCTCTGCACGACCTCCAAGCAAGCAGACCCATTTCAAACACGCT
CCTGGGCTCCTCCTCCCCCTCCTCCCCCTCCTTCTTCGCCCGTGTTCAAG
GACAGGTTAAGCAGAGAAATGGGTGAGGCCTAGGAAAGGGCGCACGCGAG
ACAATTAAATGTAATACAAGGCCCAAAACATACGAAGATTGCATGCACAT
ATTTATCTTGCTTTATTTCAAGTTTGCTTCTTTCATATCACATATCACAT
AGTACCTTGGTTGGATAAAAAAATATAGTTTTGGAGGCAGCAATTATGGC
CTACATCTTTCCTCCGCGTGTAAAGCAGGTACCGAAAGGCGTACCCACAG
ATCCAAACTATCATCAAGCCATGTCCCACATGTCCCCGCCTCTTATATTA
TTGCCGCCACGGTGCGCCTGGTTCATGCCAGCTGCAACGTCACACAGTAA
ATTGTTGCTAGGAAATGTCGAGCACTATTTCGTCTTGCGCTGAGTAATGT
AGTAATCAGAGTATCGCAGGAAGAAGCGAGGTATTTGTGGAGGGTCGGTG
GAAAATGCCTTCGAGGTGGGTTTTCACAAGGGCCAGAGGAGACCCGAATC
GAGATCCTGAGGGTACTGCTCGAGGTTGAATCCTTTTTCGAGGAACACTC
GATCAATGGCACATTTACAAGCTACAGTGTGCCCGTTTGACGCAAGTTTA
GGAGGATATCTTCATTGTAATACGCATTACAACTAGATCGAGGGGCAGCC
ACGTGTGTCCAGAGTGCAAGGAGCCTTGGAAGAGGCAAGGACCGACGCCA
AGTTCCAAGGAGACGTACTAGTACGCCCTCAACTTACGTACCTACACCAC
ACACACAGCCATGAAGGAGCAGGCAGCAGACATCCCCACAGCACCACTAC
CACCACACCGGCGATGGATCCACGATATGGAAGCCGTAAGCTGTCGGGGC
TGCCGAGCGCCATTCACTTCCCTCGCCCGTCGGAAGCACCACTGCCGGGC
TTGCGGGCGCGTCTTCTGCTTGGCATGCACACGACACAAACTCTTCATCC
CGCCCGCCGACGTAATCCGTCCACGCAAAACCCCCGCCGCTGCCGTTATC
CCGCTTAACCTCGATCCTTATTTGCCCCAGCGCGTCTGCGACACTTGCGC
CTCCCTCCTCCTCCCCCTCCAACCTGCCCTCCGCCTCACCAGCAGCAAAG
CCACACAAGCCCTCCACATTGACCGTCGCTCTTGGGCAAGATATTTCAAT
CATCCCGTGCAATTCTCACTGGGAGAAGAAATCAAAAAGGCCTCTTACAC
TCTGTGTAATTTTACGGGAGACAGTGCCTTGGGAGGGAGAGACAGCATTC
CGGGAGAGCTCTTGTGGGGAGCCAAGGGCCTGGCGTTTCTGACGGTGGTC
AAGGCAGGCATGTTTGTCACGGCTCGAATAGGGACAGGGCTGGTGATTGC
ACGGTTGCATGACGAAGAGGACGAGGAGGAGGAGGAGAAGGAAGGGGGGG
GAGGGAGGGAGGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGTA
AGGTGGTCGGCGCCGTCGGCGTTGGGGTGCACGGGAGTGGGATACGGATT
TTCGTTCGGAGTGGAAGTGGTACGTGTTTTGAATCAAAGATGTTGTTATT
TTTTAGCTTTGTGTTCACGTGTATTTCTGAGTGTTTGAAGTGTCCCTTCT
TCCTAAGACGTCGAACCCCCGCTGTTGGGGTGCAGTTCTTCTTACCCTCC
CTCCGTTCTTCCCTCCCTTCCCCCCCTCCTTCAGACGGATCTGCTCGTCA
TCCTCTCTTCCCAAGAAGCCGTCAATGCCTTCTCTACCCGCGCACAAATC
TCTCTCGGGACGGAGCTAGGGATCGCCCTCGGTCCCCTGGGCCGCACCGC
CGCCACTGACCTCCACTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGCAGGCTG
GGAGCGGGGTTCAGCTACGGCCATAGCAGAGGTGCTTTTATGGGGGTGTC
AGTGGAGGGGTCTGTACTAACGGCACGGGAAAGGGTAAACCAAGAGTTTT
ATGGAATGAAAGACGTGACGGTAGGAGGTATTTTAAGTGGGGAGATACCG
CCACCATTGGCCGCGTTTCCCTTGTATAAAGCCTTGGAAGAGGTGATGGG
GGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCGTGTGGTACGAGGT
GGGACTCAAGGAACGGCATGCATGGGCGGCAACGATCCAAAACGGGGAGG
GACGGAGGGGAGGAAAGAAGGCAAGAGGAGGAGGAGGAGGATGATGGGGA
GGATGAGGAGGTGGGAGGGTTGTTGAGAGGGATGGGTGGGGAGATGATGA
CCTTTCAGGTAATGGGGGAGTAGTGGGAGGTGTGGGGGTGGAGGGAAAAC
GGGAGGAGGGGGAGGACGAGGAAGACGAAGAGGAGGGGGAGAAGGACGAA
GACGAAGAGGAGAGGGAGAAGGAGGAAGGGGGCGTGTACAGAACACAGGA
GGAAAAAACAAGAAACATGCACCACAAGGCCTGCTTTCGGTTGCTTTTTT
TGTTCCAATCTCTCTTTCCTTTCCTTCTCTCCCGTCCTCCTTTCACCCTT
CCTTTCCCCCTCTTCTACGAGGCAAGCAAGCAAGAAGGGAGGGAAGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGG back to topCoding sequence (CDS) from alignment at scaffold_35:142797..145524- >mRNA_9345 ID=mRNA_9345|Name=jgi.p|Nanoce1779_2|560271|organism=Nannochloropsis oceanica|type=CDS|length=3942bp|location=Sequence derived from alignment at scaffold_35:142797..145524- (Nannochloropsis oceanica)
ACGGATCTGCTCGTCATCCTCTCTTCCCAAGAAGCCGTCAATGCCTTCTC
TACCCGCGCACAAATCTCTCTCGGGACGGAGCTAGGGATCGCCCTCGGTC
CCCTGGGCCGCACCGCCGCCACTGACCTCCACTACAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAG
GAGGAGGAGCAGGCTGGGAGCGGGGTTCAGCTACGGCCATAGCAGAGGTG
CTTTTATGGGGGTGTCAGTGGAGGGGTCTGTACTAACGGCACGGGAAAGG
GTAAACCAAGAGTTTTATGGAATGAAAGACGTGACGGTAGGAGGTATTTT
AAGTGGGGAGATACCGCCACCATTGGCCGCGTTTCCCTTGTATAAAGCCT
TGGAAGAGGTGATGGGGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GCGTGTGGTACGAGGTGGGACTCAAGGAACGGCATGCATGGGCGGCAACG
ATCCAAAACGGGGAGGGACGGAGGGGAGGAAAGAAGGCAAGAGGAGGAGG
AGGAGGATGATGGGGAGGATGAGGAGGTGGGAGGGTTGTTGAGAGGGATG
GGTGGGGAGATGATGACCTTTCAGGTAATGGGGGAGTAGGAGGGGGAGGG
TAAGGTGGTCGGCGCCGTCGGCGTTGGGGTGCACGGGAGTGGGATACGGA
TTTTCGTTCGGAGTGGAAGTGATGAAGGAGCAGGCAGCAGACATCCCCAC
AGCACCACTACCACCACACCGGCGATGGATCCACGATATGGAAGCCGTAA
GCTGTCGGGGCTGCCGAGCGCCATTCACTTCCCTCGCCCGTCGGAAGCAC
CACTGCCGGGCTTGCGGGCGCGTCTTCTGCTTGGCATGCACACGACACAA
ACTCTTCATCCCGCCCGCCGACGTAATCCGTCCACGCAAAACCCCCGCCG
CTGCCGTTATCCCGCTTAACCTCGATCCTTATTTGCCCCAGCGCGTCTGC
GACACTTGCGCCTCCCTCCTCCTCCCCCTCCAACCTGCCCTCCGCCTCAC
CAGCAGCAAAGCCACACAAGCCCTCCACATTGACCGTCGCTCTTGGGCAA
GATATTTCAATCATCCCGTGCAATTCTCACTGGGAGAAGAAATCAAAAAG
GCCTCTTACACTCTGTGTAATTTTACGGGAGACAGTGCCTTGGGAGGGAG
AGACAGCATTCCGGGAGAGCTCTTGTGGGGAGCCAAGGGCCTGGCGTTTC
TGACGGTGGTCAAGGCAGGCATGTTTGTCACGGCTCGAATAGGGACAGGG
CTGGTGATTGCACGACGGATCTGCTCGTCATCCTCTCTTCCCAAGAAGCC
GTCAATGCCTTCTCTACCCGCGCACAAATCTCTCTCGGGACGGAGCTAGG
GATCGCCCTCGGTCCCCTGGGCCGCACCGCCGCCACTGACCTCCACTACA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGGAGGAGGAGGAGGAGCAGGCTGGGAGCGGGGTTCAGCTACGG
CCATAGCAGAGGTGCTTTTATGGGGGTGTCAGTGGAGGGGTCTGTACTAA
CGGCACGGGAAAGGGTAAACCAAGAGTTTTATGGAATGAAAGACGTGACG
GTAGGAGGTATTTTAAGTGGGGAGATACCGCCACCATTGGCCGCGTTTCC
CTTGTATAAAGCCTTGGAAGAGGTGATGGGGGAGGGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGCGTGTGGTACGAGGTGGGACTCAAGGAACGGCATG
CATGGGCGGCAACGATCCAAAACGGGGAGGGACGGAGGGGAGGAAAGAAG
GCAAGAGGAGGAGGAGGAGGATGATGGGGAGGATGAGGAGGTGGGAGGGT
TGTTGAGAGGGATGGGTGGGGAGATGATGACCTTTCAGGTAATGGGGGAG
TAGGAGGGGGAGGGTAAGGTGGTCGGCGCCGTCGGCGTTGGGGTGCACGG
GAGTGGGATACGGATTTTCGTTCGGAGTGGAAGTGATGAAGGAGCAGGCA
GCAGACATCCCCACAGCACCACTACCACCACACCGGCGATGGATCCACGA
TATGGAAGCCGTAAGCTGTCGGGGCTGCCGAGCGCCATTCACTTCCCTCG
CCCGTCGGAAGCACCACTGCCGGGCTTGCGGGCGCGTCTTCTGCTTGGCA
TGCACACGACACAAACTCTTCATCCCGCCCGCCGACGTAATCCGTCCACG
CAAAACCCCCGCCGCTGCCGTTATCCCGCTTAACCTCGATCCTTATTTGC
CCCAGCGCGTCTGCGACACTTGCGCCTCCCTCCTCCTCCCCCTCCAACCT
GCCCTCCGCCTCACCAGCAGCAAAGCCACACAAGCCCTCCACATTGACCG
TCGCTCTTGGGCAAGATATTTCAATCATCCCGTGCAATTCTCACTGGGAG
AAGAAATCAAAAAGGCCTCTTACACTCTGTGTAATTTTACGGGAGACAGT
GCCTTGGGAGGGAGAGACAGCATTCCGGGAGAGCTCTTGTGGGGAGCCAA
GGGCCTGGCGTTTCTGACGGTGGTCAAGGCAGGCATGTTTGTCACGGCTC
GAATAGGGACAGGGCTGGTGATTGCACGACGGATCTGCTCGTCATCCTCT
CTTCCCAAGAAGCCGTCAATGCCTTCTCTACCCGCGCACAAATCTCTCTC
GGGACGGAGCTAGGGATCGCCCTCGGTCCCCTGGGCCGCACCGCCGCCAC
TGACCTCCACTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGCAGGCTGGGAGCG
GGGTTCAGCTACGGCCATAGCAGAGGTGCTTTTATGGGGGTGTCAGTGGA
GGGGTCTGTACTAACGGCACGGGAAAGGGTAAACCAAGAGTTTTATGGAA
TGAAAGACGTGACGGTAGGAGGTATTTTAAGTGGGGAGATACCGCCACCA
TTGGCCGCGTTTCCCTTGTATAAAGCCTTGGAAGAGGTGATGGGGGAGGG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGCGTGTGGTACGAGGTGGGACT
CAAGGAACGGCATGCATGGGCGGCAACGATCCAAAACGGGGAGGGACGGA
GGGGAGGAAAGAAGGCAAGAGGAGGAGGAGGAGGATGATGGGGAGGATGA
GGAGGTGGGAGGGTTGTTGAGAGGGATGGGTGGGGAGATGATGACCTTTC
AGGTAATGGGGGAGTAGGAGGGGGAGGGTAAGGTGGTCGGCGCCGTCGGC
GTTGGGGTGCACGGGAGTGGGATACGGATTTTCGTTCGGAGTGGAAGTGA
TGAAGGAGCAGGCAGCAGACATCCCCACAGCACCACTACCACCACACCGG
CGATGGATCCACGATATGGAAGCCGTAAGCTGTCGGGGCTGCCGAGCGCC
ATTCACTTCCCTCGCCCGTCGGAAGCACCACTGCCGGGCTTGCGGGCGCG
TCTTCTGCTTGGCATGCACACGACACAAACTCTTCATCCCGCCCGCCGAC
GTAATCCGTCCACGCAAAACCCCCGCCGCTGCCGTTATCCCGCTTAACCT
CGATCCTTATTTGCCCCAGCGCGTCTGCGACACTTGCGCCTCCCTCCTCC
TCCCCCTCCAACCTGCCCTCCGCCTCACCAGCAGCAAAGCCACACAAGCC
CTCCACATTGACCGTCGCTCTTGGGCAAGATATTTCAATCATCCCGTGCA
ATTCTCACTGGGAGAAGAAATCAAAAAGGCCTCTTACACTCTGTGTAATT
TTACGGGAGACAGTGCCTTGGGAGGGAGAGACAGCATTCCGGGAGAGCTC
TTGTGGGGAGCCAAGGGCCTGGCGTTTCTGACGGTGGTCAAGGCAGGCAT
GTTTGTCACGGCTCGAATAGGGACAGGGCTGGTGATTGCACG back to top
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