jgi.p|Nanoce1779_2|273389, mRNA_9144 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|273389
Unique NamemRNA_9144
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length861
Alignment locationscaffold_36:54760..55620 +

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Properties
Property NameValue
TranscriptId273475
TrackFilteredModels2
ProteinId273389
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:54760..55620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|273389gene_9144Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|273389mRNA_9144-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9144CDS_9144Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9144 ID=mRNA_9144|Name=jgi.p|Nanoce1779_2|273389|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
AAAGGAAGGAAGGGAAAAGGAGGAAGAAAAAAGGAAGGGAAGGAGGGAGT
AGGCAATTGTGTGTGAATGAGAGAGAGGAGGGGGGGGGGTAGGGAGAGTC
TGTGTACTGTATCTTGAGACAACTTTTATGTTATTTGATGTGTTGTGGTG
CGGCAAGAGGGTGCGTGCAGTGGGCGCTTCTCGCTTTCCCATTTTTTCCT
TGTGGCGCTCGAAATTGAGGATGATTAGGGAAGATATATATGTATGCATG
TGTGAATGTGTGAGAGAGAGGGCGGTAGAGAGTGAGGAGTATAGAAAGAG
TGAAGGGGGAAGATGCATGATTTTACACGTCCTCTTCATGTCTTACGTGA
ATGCCCTCGTCTCCTTCTTGACTTTTTTTTGTTTCTTAGGACGTAGTGAA
AGTGCTGTCAGTCGAACGCGGGAGGGAGGGAGGGAGGGAGGGAGCGAGGG
AGCGAGGGAGCGAGGGAGGGAGGGACGGGGGGAGGACGCTCTTGGGTGTT
TCTTTATTCATTCTTTCCCAGGACGGAGAGAAAGTGGTGGAGCAAGAGGG
GGAAGAGGAGAAGGAGTAGAAGGAGGACGGGGAGAAGGACGAGGAGATTT
GAGCTTCTGGGAGGTTGTTGTAGGACAAGAAGGAAGCAGGGGAGAAAGAA
GGCTGTGGCCAGCTTTTCATATGGGAAAAAAAAAGGAAAAGGAAAAGCAA
AGCATTTATCCCTCCTTTTGGACGAAGGAAGGGGAAAGGATGGAAGAAAA
ATATTAGGCGCGAAAGAAAAAGGAAACCGGGCACAAGGAGTTAAATCCCT
CCGAAAAAGAAGAACGAAGAATGAAACACCTGCACTGAAGGCAGGCCGCG
GGAAAGGGAAG
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protein sequence of jgi.p|Nanoce1779_2|273389

>mRNA_9144-protein ID=mRNA_9144-protein|Name=jgi.p|Nanoce1779_2|273389|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MLFDVLWCGKRVRAVGASRFPIFSLWRSKLRMIREDIYVCMCECVRERAV
ESEEYRKSEGGRCMILHVLFMSYVNALVSFLTFFCFLGRSESAVSRTREG
GREGGSEGARERGREGRGEDALGCFFIHSFPGRRESGGARGGRGEGVEGG
RGEGRGDLSFWEVVVGQEGSRGERRLWPAFHMGKKKEKEKQSIYPSFWTK
EGERMEEKY*
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mRNA from alignment at scaffold_36:54760..55620+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9144 ID=mRNA_9144|Name=jgi.p|Nanoce1779_2|273389|organism=Nannochloropsis oceanica|type=mRNA|length=861bp|location=Sequence derived from alignment at scaffold_36:54760..55620+ (Nannochloropsis oceanica)
AAAGGAAGGAAGGGAAAAGGAGGAAGAAAAAAGGAAGGGAAGGAGGGAGT
AGGCAATTGTGTGTGAATGAGAGAGAGGAGGGGGGGGGGTAGGGAGAGTC
TGTGTACTGTATCTTGAGACAACTTTTATGTTATTTGATGTGTTGTGGTG
CGGCAAGAGGGTGCGTGCAGTGGGCGCTTCTCGCTTTCCCATTTTTTCCT
TGTGGCGCTCGAAATTGAGGATGATTAGGGAAGATATATATGTATGCATG
TGTGAATGTGTGAGAGAGAGGGCGGTAGAGAGTGAGGAGTATAGAAAGAG
TGAAGGGGGAAGATGCATGATTTTACACGTCCTCTTCATGTCTTACGTGA
ATGCCCTCGTCTCCTTCTTGACTTTTTTTTGTTTCTTAGGACGTAGTGAA
AGTGCTGTCAGTCGAACGCGGGAGGGAGGGAGGGAGGGAGGGAGCGAGGG
AGCGAGGGAGCGAGGGAGGGAGGGACGGGGGGAGGACGCTCTTGGGTGTT
TCTTTATTCATTCTTTCCCAGGACGGAGAGAAAGTGGTGGAGCAAGAGGG
GGAAGAGGAGAAGGAGTAGAAGGAGGACGGGGAGAAGGACGAGGAGATTT
GAGCTTCTGGGAGGTTGTTGTAGGACAAGAAGGAAGCAGGGGAGAAAGAA
GGCTGTGGCCAGCTTTTCATATGGGAAAAAAAAAGGAAAAGGAAAAGCAA
AGCATTTATCCCTCCTTTTGGACGAAGGAAGGGGAAAGGATGGAAGAAAA
ATATTAGGCGCGAAAGAAAAAGGAAACCGGGCACAAGGAGTTAAATCCCT
CCGAAAAAGAAGAACGAAGAATGAAACACCTGCACTGAAGGCAGGCCGCG
GGAAAGGGAAG
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Coding sequence (CDS) from alignment at scaffold_36:54760..55620+

>mRNA_9144 ID=mRNA_9144|Name=jgi.p|Nanoce1779_2|273389|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_36:54760..55620+ (Nannochloropsis oceanica)
ATGTTATTTGATGTGTTGTGGTGCGGCAAGAGGGTGCGTGCAGTGGGCGC
TTCTCGCTTTCCCATTTTTTCCTTGTGGCGCTCGAAATTGAGGATGATTA
GGGAAGATATATATGTATGCATGTGTGAATGTGTGAGAGAGAGGGCGGTA
GAGAGTGAGGAGTATAGAAAGAGTGAAGGGGGAAGATGCATGATTTTACA
CGTCCTCTTCATGTCTTACGTGAATGCCCTCGTCTCCTTCTTGACTTTTT
TTTGTTTCTTAGGACGTAGTGAAAGTGCTGTCAGTCGAACGCGGGAGGGA
GGGAGGGAGGGAGGGAGCGAGGGAGCGAGGGAGCGAGGGAGGGAGGGACG
GGGGGAGGACGCTCTTGGGTGTTTCTTTATTCATTCTTTCCCAGGACGGA
GAGAAAGTGGTGGAGCAAGAGGGGGAAGAGGAGAAGGAGTAGAAGGAGGA
CGGGGAGAAGGACGAGGAGATTTGAGCTTCTGGGAGGTTGTTGTAGGACA
AGAAGGAAGCAGGGGAGAAAGAAGGCTGTGGCCAGCTTTTCATATGGGAA
AAAAAAAGGAAAAGGAAAAGCAAAGCATTTATCCCTCCTTTTGGACGAAG
GAAGGGGAAAGGATGGAAGAAAAATATTAG
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Synonyms
Publications