jgi.p|Nanoce1779_2|533325, mRNA_9190 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533325
Unique Name	mRNA_9190
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2013
Alignment location	scaffold_36:176593..178605 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	533411
Track	FilteredModels2
ProteinId	533325

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:176593..178605 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533325	gene_9190	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533325	mRNA_9190-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9190	CDS_9190	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:176593..178605+
coding sequence from alignment at scaffold_36:176593..178605+

mRNA sequence

>mRNA_9190 ID=mRNA_9190|Name=jgi.p|Nanoce1779_2|533325|organism=Nannochloropsis oceanica|type=mRNA|length=2013bp
ATGCGAGAAGCAGAAAAAGAAGCGGAAGCAGGGGCTAGCAGTGGTGAAGG
TATCGGTAGTGGGATTACCAAATCAATTTCCTTCCTCAGGCTGCCACGGG
TCACCCCTGCGCAACGTTATGCGGCTGCTATTTTGTTGGGTTCGGAAACG
TTTCGATTTAAGCGAAGCGTGCCTACCGTTGAGACCAAGGAGGAAGGGGA
GAGAGGGTGTGTGGAGGAAGAGGTATTGATGATAGTAGGGCAGGGGTTCA
AGCCGCTGGAGCCATCAGTGGTGCACTCGCGAGAGGTCATGTCGTTCGTG
CAGGCCGTAAGGCACACGGAGGAGAAGCGCCTATTAATGGCCACCGAAGG
TGAAGAGGAAGTGGGAGACGATGGGACTGCAGCTGCTGCGGCACCTGCCG
CAGGATCGGCACAGTGGGACGCGTCTCAGTGGCGGATGCTACACCACCTG
GAGGTAGTCGCCTTGGGCGCGGGCGTCGAAGGCCTCTCAGCCACTAGCAA
GCAAGTCCTCAAATCTCTAGGGGAGGCAGCCACGCCTGAAGGTGCCAAGT
CTGTCCTCCTCCGTGCTGGGTGCTGGACCGAGAAGAAAGGAGACGGCCGT
GGACAGCGTCAGGCAGATATGGCTGCTGCTGCTGCTGCGGCTCGGAGCGC
TGCAACCCCCTGGCCAGAAGAGATCTTGGAGTTGGCTAAGGAGGCATTTA
ATAAGACGCAGAAACGACGGGCAGCGCTGGAGAAGGTGGCGACACCAAAT
CGACCCGGTCGCAAAGGGCCGCATGGCCGGTGCGACTACCGAAAGGCGGG
CTTGGGGGCCTACGCGTTGGACCCCTCGGGCTCGGAGTTCGCGGATGATG
CCCTGGGGTTCGATCCAGAGACGGGAGAGATCTTGATTCACATTGCTGAT
GTTCAGCCGTTGCTGGAGAGTGCGCCGGAGCTTGAGGCGCTCGCGAGACA
TAGAGGAGAAGCCTTGTATTTGCCTGATGGGCCACTACACTTGCTGCCGC
CGCAAGCGTTGCAGGCGGCGTCTTTGAGCGATCGAGAAGTGAACGAGTGT
GTGACAGCGGCGGTGACTCTGGGGAAGGATGGGAGGGTAGTCAATGTCAG
ATTTTTATTGTCCTTGATCCCGCCGGTTACAAGGGTTAGGTACGACGAGG
CGAATGATTTGCTGGCCTCTTCTCCTGAGCAGGTTCCTGCGTACAGGAGG
AAAGCCGCTGCCGATCTAGCCGTGTTATTGGAGGCGTCGACCACTCGAAG
GGGAATGACCAAGCGAAACTTTTCCGATAGCAAGCGTGTGTCGCGGGTGA
AGAGGAACACCAATGGGGAGCTGGAGGCGATTTCCTTCCAGAGGACTCCG
GCTCATTTGATGGTGGATGAGTTCCTGGCCCTCTATTCGGAGGCGGGTCG
TCGCTTCTTGAAGGCGCACAGTGTGACCTTGCCGCTTGCCCCGGGCTCGG
TCTCGGGGGGTTTGGATGCGGCGAGGTTTGGCACGGGCCCCTTGAGACGG
TATATCGACGTGTTGGTGCAGCATCAGGTCGTGGCTATTTTGAAGGGCCA
AGCGCCTTTCTCCAAGAATGAGGTTATTCAGAGGATGACGCAGGTGAACT
GGCAGAGCAAGGCCTCCCAGAAACTGAGATCAGTGAGTCGGAACAAGGTT
TTATTGGAGTCATTCGCCACTTATTGTGCCTCGAAAGCCAAGGCGGCGGG
GGAAGCCTACGCTGTTGTTACTGCCACTGCTACCGGAACAGGCACAGAGG
TGATACTCCCGGATGTGGGCTTGAGGAGCTATGTGAAACTGCCGGGGGAT
TGGAAAAAGGGAGGGAAGGAGGGAGGAGAGGGAGGAAGGGAAGGAGGGCC
CCGTAGATTATTTGATTTGATGGCGGGCAAGGCGTTCGAGGTGCACGTGC
TGAGAGTAGACCCTGCGAAGGGGGTGATCGATCTGGAGTTTGCCCATGAG
AAGGATGCGGTGGGGGTGACGATCCCAGAAGTGGAGGAAAAAGACGAGGG
AGAGGAGGAGTAG

protein sequence of jgi.p|Nanoce1779_2|533325

>mRNA_9190-protein ID=mRNA_9190-protein|Name=jgi.p|Nanoce1779_2|533325|organism=Nannochloropsis oceanica|type=polypeptide|length=671bp
MREAEKEAEAGASSGEGIGSGITKSISFLRLPRVTPAQRYAAAILLGSET
FRFKRSVPTVETKEEGERGCVEEEVLMIVGQGFKPLEPSVVHSREVMSFV
QAVRHTEEKRLLMATEGEEEVGDDGTAAAAAPAAGSAQWDASQWRMLHHL
EVVALGAGVEGLSATSKQVLKSLGEAATPEGAKSVLLRAGCWTEKKGDGR
GQRQADMAAAAAAARSAATPWPEEILELAKEAFNKTQKRRAALEKVATPN
RPGRKGPHGRCDYRKAGLGAYALDPSGSEFADDALGFDPETGEILIHIAD
VQPLLESAPELEALARHRGEALYLPDGPLHLLPPQALQAASLSDREVNEC
VTAAVTLGKDGRVVNVRFLLSLIPPVTRVRYDEANDLLASSPEQVPAYRR
KAAADLAVLLEASTTRRGMTKRNFSDSKRVSRVKRNTNGELEAISFQRTP
AHLMVDEFLALYSEAGRRFLKAHSVTLPLAPGSVSGGLDAARFGTGPLRR
YIDVLVQHQVVAILKGQAPFSKNEVIQRMTQVNWQSKASQKLRSVSRNKV
LLESFATYCASKAKAAGEAYAVVTATATGTGTEVILPDVGLRSYVKLPGD
WKKGGKEGGEGGREGGPRRLFDLMAGKAFEVHVLRVDPAKGVIDLEFAHE
KDAVGVTIPEVEEKDEGEEE*

mRNA from alignment at scaffold_36:176593..178605+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9190 ID=mRNA_9190|Name=jgi.p|Nanoce1779_2|533325|organism=Nannochloropsis oceanica|type=mRNA|length=2013bp|location=Sequence derived from alignment at scaffold_36:176593..178605+ (Nannochloropsis oceanica)
ATGCGAGAAGCAGAAAAAGAAGCGGAAGCAGGGGCTAGCAGTGGTGAAGG
TATCGGTAGTGGGATTACCAAATCAATTTCCTTCCTCAGGCTGCCACGGG
TCACCCCTGCGCAACGTTATGCGGCTGCTATTTTGTTGGGTTCGGAAACG
TTTCGATTTAAGCGAAGCGTGCCTACCGTTGAGACCAAGGAGGAAGGGGA
GAGAGGGTGTGTGGAGGAAGAGGTATTGATGATAGTAGGGCAGGGGTTCA
AGCCGCTGGAGCCATCAGTGGTGCACTCGCGAGAGGTCATGTCGTTCGTG
CAGGCCGTAAGGCACACGGAGGAGAAGCGCCTATTAATGGCCACCGAAGG
TGAAGAGGAAGTGGGAGACGATGGGACTGCAGCTGCTGCGGCACCTGCCG
CAGGATCGGCACAGTGGGACGCGTCTCAGTGGCGGATGCTACACCACCTG
GAGGTAGTCGCCTTGGGCGCGGGCGTCGAAGGCCTCTCAGCCACTAGCAA
GCAAGTCCTCAAATCTCTAGGGGAGGCAGCCACGCCTGAAGGTGCCAAGT
CTGTCCTCCTCCGTGCTGGGTGCTGGACCGAGAAGAAAGGAGACGGCCGT
GGACAGCGTCAGGCAGATATGGCTGCTGCTGCTGCTGCGGCTCGGAGCGC
TGCAACCCCCTGGCCAGAAGAGATCTTGGAGTTGGCTAAGGAGGCATTTA
ATAAGACGCAGAAACGACGGGCAGCGCTGGAGAAGGTGGCGACACCAAAT
CGACCCGGTCGCAAAGGGCCGCATGGCCGGTGCGACTACCGAAAGGCGGG
CTTGGGGGCCTACGCGTTGGACCCCTCGGGCTCGGAGTTCGCGGATGATG
CCCTGGGGTTCGATCCAGAGACGGGAGAGATCTTGATTCACATTGCTGAT
GTTCAGCCGTTGCTGGAGAGTGCGCCGGAGCTTGAGGCGCTCGCGAGACA
TAGAGGAGAAGCCTTGTATTTGCCTGATGGGCCACTACACTTGCTGCCGC
CGCAAGCGTTGCAGGCGGCGTCTTTGAGCGATCGAGAAGTGAACGAGTGT
GTGACAGCGGCGGTGACTCTGGGGAAGGATGGGAGGGTAGTCAATGTCAG
ATTTTTATTGTCCTTGATCCCGCCGGTTACAAGGGTTAGGTACGACGAGG
CGAATGATTTGCTGGCCTCTTCTCCTGAGCAGGTTCCTGCGTACAGGAGG
AAAGCCGCTGCCGATCTAGCCGTGTTATTGGAGGCGTCGACCACTCGAAG
GGGAATGACCAAGCGAAACTTTTCCGATAGCAAGCGTGTGTCGCGGGTGA
AGAGGAACACCAATGGGGAGCTGGAGGCGATTTCCTTCCAGAGGACTCCG
GCTCATTTGATGGTGGATGAGTTCCTGGCCCTCTATTCGGAGGCGGGTCG
TCGCTTCTTGAAGGCGCACAGTGTGACCTTGCCGCTTGCCCCGGGCTCGG
TCTCGGGGGGTTTGGATGCGGCGAGGTTTGGCACGGGCCCCTTGAGACGG
TATATCGACGTGTTGGTGCAGCATCAGGTCGTGGCTATTTTGAAGGGCCA
AGCGCCTTTCTCCAAGAATGAGGTTATTCAGAGGATGACGCAGGTGAACT
GGCAGAGCAAGGCCTCCCAGAAACTGAGATCAGTGAGTCGGAACAAGGTT
TTATTGGAGTCATTCGCCACTTATTGTGCCTCGAAAGCCAAGGCGGCGGG
GGAAGCCTACGCTGTTGTTACTGCCACTGCTACCGGAACAGGCACAGAGG
TGATACTCCCGGATGTGGGCTTGAGGAGCTATGTGAAACTGCCGGGGGAT
TGGAAAAAGGGAGGGAAGGAGGGAGGAGAGGGAGGAAGGGAAGGAGGGCC
CCGTAGATTATTTGATTTGATGGCGGGCAAGGCGTTCGAGGTGCACGTGC
TGAGAGTAGACCCTGCGAAGGGGGTGATCGATCTGGAGTTTGCCCATGAG
AAGGATGCGGTGGGGGTGACGATCCCAGAAGTGGAGGAAAAAGACGAGGG
AGAGGAGGAGTAG

Coding sequence (CDS) from alignment at scaffold_36:176593..178605+

>mRNA_9190 ID=mRNA_9190|Name=jgi.p|Nanoce1779_2|533325|organism=Nannochloropsis oceanica|type=CDS|length=2013bp|location=Sequence derived from alignment at scaffold_36:176593..178605+ (Nannochloropsis oceanica)
ATGCGAGAAGCAGAAAAAGAAGCGGAAGCAGGGGCTAGCAGTGGTGAAGG
TATCGGTAGTGGGATTACCAAATCAATTTCCTTCCTCAGGCTGCCACGGG
TCACCCCTGCGCAACGTTATGCGGCTGCTATTTTGTTGGGTTCGGAAACG
TTTCGATTTAAGCGAAGCGTGCCTACCGTTGAGACCAAGGAGGAAGGGGA
GAGAGGGTGTGTGGAGGAAGAGGTATTGATGATAGTAGGGCAGGGGTTCA
AGCCGCTGGAGCCATCAGTGGTGCACTCGCGAGAGGTCATGTCGTTCGTG
CAGGCCGTAAGGCACACGGAGGAGAAGCGCCTATTAATGGCCACCGAAGG
TGAAGAGGAAGTGGGAGACGATGGGACTGCAGCTGCTGCGGCACCTGCCG
CAGGATCGGCACAGTGGGACGCGTCTCAGTGGCGGATGCTACACCACCTG
GAGGTAGTCGCCTTGGGCGCGGGCGTCGAAGGCCTCTCAGCCACTAGCAA
GCAAGTCCTCAAATCTCTAGGGGAGGCAGCCACGCCTGAAGGTGCCAAGT
CTGTCCTCCTCCGTGCTGGGTGCTGGACCGAGAAGAAAGGAGACGGCCGT
GGACAGCGTCAGGCAGATATGGCTGCTGCTGCTGCTGCGGCTCGGAGCGC
TGCAACCCCCTGGCCAGAAGAGATCTTGGAGTTGGCTAAGGAGGCATTTA
ATAAGACGCAGAAACGACGGGCAGCGCTGGAGAAGGTGGCGACACCAAAT
CGACCCGGTCGCAAAGGGCCGCATGGCCGGTGCGACTACCGAAAGGCGGG
CTTGGGGGCCTACGCGTTGGACCCCTCGGGCTCGGAGTTCGCGGATGATG
CCCTGGGGTTCGATCCAGAGACGGGAGAGATCTTGATTCACATTGCTGAT
GTTCAGCCGTTGCTGGAGAGTGCGCCGGAGCTTGAGGCGCTCGCGAGACA
TAGAGGAGAAGCCTTGTATTTGCCTGATGGGCCACTACACTTGCTGCCGC
CGCAAGCGTTGCAGGCGGCGTCTTTGAGCGATCGAGAAGTGAACGAGTGT
GTGACAGCGGCGGTGACTCTGGGGAAGGATGGGAGGGTAGTCAATGTCAG
ATTTTTATTGTCCTTGATCCCGCCGGTTACAAGGGTTAGGTACGACGAGG
CGAATGATTTGCTGGCCTCTTCTCCTGAGCAGGTTCCTGCGTACAGGAGG
AAAGCCGCTGCCGATCTAGCCGTGTTATTGGAGGCGTCGACCACTCGAAG
GGGAATGACCAAGCGAAACTTTTCCGATAGCAAGCGTGTGTCGCGGGTGA
AGAGGAACACCAATGGGGAGCTGGAGGCGATTTCCTTCCAGAGGACTCCG
GCTCATTTGATGGTGGATGAGTTCCTGGCCCTCTATTCGGAGGCGGGTCG
TCGCTTCTTGAAGGCGCACAGTGTGACCTTGCCGCTTGCCCCGGGCTCGG
TCTCGGGGGGTTTGGATGCGGCGAGGTTTGGCACGGGCCCCTTGAGACGG
TATATCGACGTGTTGGTGCAGCATCAGGTCGTGGCTATTTTGAAGGGCCA
AGCGCCTTTCTCCAAGAATGAGGTTATTCAGAGGATGACGCAGGTGAACT
GGCAGAGCAAGGCCTCCCAGAAACTGAGATCAGTGAGTCGGAACAAGGTT
TTATTGGAGTCATTCGCCACTTATTGTGCCTCGAAAGCCAAGGCGGCGGG
GGAAGCCTACGCTGTTGTTACTGCCACTGCTACCGGAACAGGCACAGAGG
TGATACTCCCGGATGTGGGCTTGAGGAGCTATGTGAAACTGCCGGGGGAT
TGGAAAAAGGGAGGGAAGGAGGGAGGAGAGGGAGGAAGGGAAGGAGGGCC
CCGTAGATTATTTGATTTGATGGCGGGCAAGGCGTTCGAGGTGCACGTGC
TGAGAGTAGACCCTGCGAAGGGGGTGATCGATCTGGAGTTTGCCCATGAG
AAGGATGCGGTGGGGGTGACGATCCCAGAAGTGGAGGAAAAAGACGAGGG
AGAGGAGGAGTAG

Synonyms

Publications