jgi.p|Nanoce1779_2|642642, mRNA_9751 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642642
Unique NamemRNA_9751
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length219
Alignment locationscaffold_37:107797..108079 -

Link to JBrowse

Properties
Property NameValue
TranscriptId642728
TrackFilteredModels2
ProteinId642642
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:107797..108079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642642gene_9751Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642642mRNA_9751-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9751CDS_9751Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9751 ID=mRNA_9751|Name=jgi.p|Nanoce1779_2|642642|organism=Nannochloropsis oceanica|type=mRNA|length=219bp
ATGCCGGGCTTCTCTCTCCGTGGTCAAGACGCGTGGCGGAACCACCCCAT
GCTGGCTAATGGCTTCAAGAGACCAATTCCCAACTTCCCCTTGGCCTGTG
GCATCTTCGTTGGTCTTGTCGCGGTGGATTGGGCCTACCGGGCAGTCAAC
GCGGACGCCCTGCCTATGGGTGCCCATTTGTGTACCGGGATTTGGGGAGA
GCTCTTGGTAGACTCCTGA
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protein sequence of jgi.p|Nanoce1779_2|642642

>mRNA_9751-protein ID=mRNA_9751-protein|Name=jgi.p|Nanoce1779_2|642642|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MPGFSLRGQDAWRNHPMLANGFKRPIPNFPLACGIFVGLVAVDWAYRAVN
ADALPMGAHLCTGIWGELLVDS*
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mRNA from alignment at scaffold_37:107797..108079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9751 ID=mRNA_9751|Name=jgi.p|Nanoce1779_2|642642|organism=Nannochloropsis oceanica|type=mRNA|length=283bp|location=Sequence derived from alignment at scaffold_37:107797..108079- (Nannochloropsis oceanica)
ATGCCGGGCTTCTCTCTCCGTGGTCAAGACGCGTGGCGGAACCACCCCAT
GCTGGCTAATGGCTTCAAGAGACCAATTCCCAACTTCCCCTTGGCCTGTG
GCATCTTCGTTGGTCTTGTCGCGGTGGATTGGGCCTACCGGGCAGTCAAC
GGTACGAACAAACACAGACGCGAAGACCCGAATCCCCCTTCTGTTCCTCC
CTTGCTCCTTGACAGCGGACGCCCTGCCTATGGGTGCCCATTTGTGTACC
GGGATTTGGGGAGAGCTCTTGGTAGACTCCTGA
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Coding sequence (CDS) from alignment at scaffold_37:107797..108079-

>mRNA_9751 ID=mRNA_9751|Name=jgi.p|Nanoce1779_2|642642|organism=Nannochloropsis oceanica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_37:107797..108079- (Nannochloropsis oceanica)
CGGACGCCCTGCCTATGGGTGCCCATTTGTGTACCGGGATTTGGGGAGAG
CTCTTGGTAGACTCCTGAATGCCGGGCTTCTCTCTCCGTGGTCAAGACGC
GTGGCGGAACCACCCCATGCTGGCTAATGGCTTCAAGAGACCAATTCCCA
ACTTCCCCTTGGCCTGTGGCATCTTCGTTGGTCTTGTCGCGGTGGATTGG
GCCTACCGGGCAGTCAACGCGGACGCCCTGCCTATGGGTGCCCATTTGTG
TACCGGGATTTGGGGAGAGCTCTTGGTAGACTCCTGAATGCCGGGCTTCT
CTCTCCGTGGTCAAGACGCGTGGCGGAACCACCCCATGCTGGCTAATGGC
TTCAAGAGACCAATTCCCAACTTCCCCTTGGCCTGTGGCATCTTCGTTGG
TCTTGTCGCGGTGGATTGGGCCTACCGGGCAGTCAACG
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Synonyms
Publications