jgi.p|Nanoce1779_2|569293, mRNA_9696 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|569293
Unique NamemRNA_9696
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length498
Alignment locationscaffold_38:148873..149841 -

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Properties
Property NameValue
TranscriptId569379
TrackFilteredModels2
ProteinId569293
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:148873..149841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569293gene_9696Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569293mRNA_9696-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9696CDS_9696Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9696 ID=mRNA_9696|Name=jgi.p|Nanoce1779_2|569293|organism=Nannochloropsis oceanica|type=mRNA|length=498bp
ATGACTCTGTCGGCTAGCTGGTTCTGCCCGGGGCCTCCAGTGGAGGAAGG
TGGGGGCGAGTTCTGGTGTTTGTATAACATCTATAAGCTAGCTGTGACGA
CCCCAAGTGTGATTGCCTCGTCCATCGTAGGTATATGGACGTGGCAAAAG
CGCCGGAAGCTCAACAACGCTGATCCTCGGCGAGTAAGGACGCTCGCTGA
TTTCTTTGACAAGCTGGTGTTGACGCTGTGCATAATTGACGCTGTGGGGT
CGCTTCCCGAGTACATTTATGTCTTTGACACCAACGCCTACCCCCTCAAG
TATTGGGACCCCGAGAGAGGAGGCCCTGTCAACACCATTCTGTACGTGGA
GATGCTAGAGGCTCAGGTCATGCTTAATTGCGTCGCCCACTCCTACATGA
GTTTCGTCATGTGGGCCTTTATTGCCCGCCGGCGTTCGGTGGCCAGGCTC
AAGCGGGATGCACCACCGCACAAGGTGAGTGAATACACAATGACATAA
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protein sequence of jgi.p|Nanoce1779_2|569293

>mRNA_9696-protein ID=mRNA_9696-protein|Name=jgi.p|Nanoce1779_2|569293|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MTLSASWFCPGPPVEEGGGEFWCLYNIYKLAVTTPSVIASSIVGIWTWQK
RRKLNNADPRRVRTLADFFDKLVLTLCIIDAVGSLPEYIYVFDTNAYPLK
YWDPERGGPVNTILYVEMLEAQVMLNCVAHSYMSFVMWAFIARRRSVARL
KRDAPPHKVSEYTMT*
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mRNA from alignment at scaffold_38:148873..149841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9696 ID=mRNA_9696|Name=jgi.p|Nanoce1779_2|569293|organism=Nannochloropsis oceanica|type=mRNA|length=969bp|location=Sequence derived from alignment at scaffold_38:148873..149841- (Nannochloropsis oceanica)
ATGACTCTGTCGGCTAGCTGGTTCTGCCCGGGGCCTCCAGTGGAGGAAGG
TGGGGGCGAGTTCTGGTGTTTGTATAACATCTATAAGCTAGCTGTGACGA
CCCCAAGGTACGTATATTTGATGTCGCCAGCTCCGGGTCTGTCTGCTCCC
GACCTCATTCTTCCCCCCCTTTCCAATAAACCCGCCTTTCCTTCCCCTCA
CCTTTCCCTCCACTTACGACCCGTCCATTCCCATACTTGTATTTGACAGT
GTGATTGCCTCGTCCATCGTAGGTATATGGACGTGGCAAAAGCGCCGGAA
GCTCAACAACGCTGATCCTCGGCGAGTAAGGACGCTCGCTGATTTCTTTG
ACAAGCTGGTACGAATGAAGGGAGGGAGGGATTAAGGGAGGGAATGGTGG
AAGGCAATCATGGCGCGACGGTACATTTCCCTTGGAGTACTCTGTCGTTC
AAATGTACCTTACACCTTCTCTTCAGGTGTTGACGCTGTGCATAATTGAC
GCTGTGGGGTCGCTTCCCGAGTACATTTATGTCTTTGACACCAACGCCTA
CCCCCTCAAGTATTGGGACCCCGAGAGAGGAGGTACGTCTAATCATGATG
AAGGGGTGGTTGCTTCTAATCATGATGATTAGGAAAGGATGGGTGCATTT
GATGATCATGATTAGGAAGGGGAGGTAGGGGCACTTATATCAAAGGCATG
CAGTCGCATGTCTTCACGCCTGATAAAGCCATCTGCGTCCATAACTTTCT
CCCCCTCCCCTCCCCATCCCTCCCCACGATTCCATGCCCCCAGGCCCTGT
CAACACCATTCTGTACGTGGAGATGCTAGAGGCTCAGGTCATGCTTAATT
GCGTCGCCCACTCCTACATGAGTTTCGTCATGTGGGCCTTTATTGCCCGC
CGGCGTTCGGTGGCCAGGCTCAAGCGGGATGCACCACCGCACAAGGTGAG
TGAATACACAATGACATAA
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Coding sequence (CDS) from alignment at scaffold_38:148873..149841-

>mRNA_9696 ID=mRNA_9696|Name=jgi.p|Nanoce1779_2|569293|organism=Nannochloropsis oceanica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_38:148873..149841- (Nannochloropsis oceanica)
GCCCTGTCAACACCATTCTGTACGTGGAGATGCTAGAGGCTCAGGTCATG
CTTAATTGCGTCGCCCACTCCTACATGAGTTTCGTCATGTGGGCCTTTAT
TGCCCGCCGGCGTTCGGTGGCCAGGCTCAAGCGGGATGCACCACCGCACA
AGGTGAGTGAATACACAATGACATAAGTGTTGACGCTGTGCATAATTGAC
GCTGTGGGGTCGCTTCCCGAGTACATTTATGTCTTTGACACCAACGCCTA
CCCCCTCAAGTATTGGGACCCCGAGAGAGGAGTGTGATTGCCTCGTCCAT
CGTAGGTATATGGACGTGGCAAAAGCGCCGGAAGCTCAACAACGCTGATC
CTCGGCGAGTAAGGACGCTCGCTGATTTCTTTGACAAGCTGATGACTCTG
TCGGCTAGCTGGTTCTGCCCGGGGCCTCCAGTGGAGGAAGGTGGGGGCGA
GTTCTGGTGTTTGTATAACATCTATAAGCTAGCTGTGACGACCCCAAGGC
CCTGTCAACACCATTCTGTACGTGGAGATGCTAGAGGCTCAGGTCATGCT
TAATTGCGTCGCCCACTCCTACATGAGTTTCGTCATGTGGGCCTTTATTG
CCCGCCGGCGTTCGGTGGCCAGGCTCAAGCGGGATGCACCACCGCACAAG
GTGAGTGAATACACAATGACATAAGTGTTGACGCTGTGCATAATTGACGC
TGTGGGGTCGCTTCCCGAGTACATTTATGTCTTTGACACCAACGCCTACC
CCCTCAAGTATTGGGACCCCGAGAGAGGAGTGTGATTGCCTCGTCCATCG
TAGGTATATGGACGTGGCAAAAGCGCCGGAAGCTCAACAACGCTGATCCT
CGGCGAGTAAGGACGCTCGCTGATTTCTTTGACAAGCTGATGACTCTGTC
GGCTAGCTGGTTCTGCCCGGGGCCTCCAGTGGAGGAAGGTGGGGGCGAGT
TCTGGTGTTTGTATAACATCTATAAGCTAGCTGTGACGACCCCAAGGCCC
TGTCAACACCATTCTGTACGTGGAGATGCTAGAGGCTCAGGTCATGCTTA
ATTGCGTCGCCCACTCCTACATGAGTTTCGTCATGTGGGCCTTTATTGCC
CGCCGGCGTTCGGTGGCCAGGCTCAAGCGGGATGCACCACCGCACAAGGT
GAGTGAATACACAATGACATAAGTGTTGACGCTGTGCATAATTGACGCTG
TGGGGTCGCTTCCCGAGTACATTTATGTCTTTGACACCAACGCCTACCCC
CTCAAGTATTGGGACCCCGAGAGAGGAGTGTGATTGCCTCGTCCATCGTA
GGTATATGGACGTGGCAAAAGCGCCGGAAGCTCAACAACGCTGATCCTCG
GCGAGTAAGGACGCTCGCTGATTTCTTTGACAAGCTGATGACTCTGTCGG
CTAGCTGGTTCTGCCCGGGGCCTCCAGTGGAGGAAGGTGGGGGCGAGTTC
TGGTGTTTGTATAACATCTATAAGCTAGCTGTGACGACCCCAAGGCCCTG
TCAACACCATTCTGTACGTGGAGATGCTAGAGGCTCAGGTCATGCTTAAT
TGCGTCGCCCACTCCTACATGAGTTTCGTCATGTGGGCCTTTATTGCCCG
CCGGCGTTCGGTGGCCAGGCTCAAGCGGGATGCACCACCGCACAAGGTGA
GTGAATACACAATGACATAAGTGTTGACGCTGTGCATAATTGACGCTGTG
GGGTCGCTTCCCGAGTACATTTATGTCTTTGACACCAACGCCTACCCCCT
CAAGTATTGGGACCCCGAGAGAGGAGTGTGATTGCCTCGTCCATCGTAGG
TATATGGACGTGGCAAAAGCGCCGGAAGCTCAACAACGCTGATCCTCGGC
GAGTAAGGACGCTCGCTGATTTCTTTGACAAGCTGATGACTCTGTCGGCT
AGCTGGTTCTGCCCGGGGCCTCCAGTGGAGGAAGGTGGGGGCGAGTTCTG
GTGTTTGTATAACATCTATAAGCTAGCTGTGACGACCCCAAG
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Synonyms
Publications