jgi.p|Nanoce1779_2|607301, mRNA_9676 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607301
Unique NamemRNA_9676
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2304
Alignment locationscaffold_38:78312..80615 -

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Properties
Property NameValue
TranscriptId607387
TrackFilteredModels2
ProteinId607301
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:78312..80615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607301gene_9676Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607301mRNA_9676-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9676CDS_9676Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9676 ID=mRNA_9676|Name=jgi.p|Nanoce1779_2|607301|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp
AGGCTTCCATTTCTGTGGCCGCCGGTCAGCACATCACAAGAGTCGAAGCA
GAGCCACCAGCAACACCCCACCTCTCTGCGGCTTGCTGCCACGCACCATG
GATACTCCTGCCGCTACCTCCTTGCCCTCCTTCCTTTCCTACCTCCGCAT
GGCCTGGATTGTCATAGCTGTGGCTCTCATCTTCATTCTCGCATACCTCT
GGAGCCTCAACCTTTGTGCCCGCCTTTGCTCAAACTATATCCCTGGCGAA
GAGGCCGGCCATCTCCTGAGCAGCGATGGCGCCAACATTCCCATAATTCA
CGCCTTCCTCGTCGTCAAGGGCCACATCACAGCTGCAGATATGGCGCAGG
TTCTCAACCAGGCAGGCATTCCCGAAAAGCGGTTCCAGCGCCTTAAGCAC
TGTATTTCGGCGGAGCCCGGTCATCTCAAGCCTTTCGACCGAAAGCGCGG
TGATTGGCCCGTCTACTGGTACCCAGAGCCATCCTTTCGTCCCGAAAACC
ACGTTCGGAATTTACCAGACGGCCTTTCACGGGTGGAACTCAAAAACTAC
TTGAGCAGCATTGTAAATACGCCTCCATCATTTTCCGTCAGTCCATGGGA
AATCCTGGTGGCAAATGCCTTGGACGGTAACGACGAACGAACGGCCTTGG
TGTTGCGACTGCACCATGTGCTCGGCGACGGTCTAAGCGTGCTGAGGCTT
CTCGAGGCCATAAGTGAGCCGGTGCAGGGGGAGCAAGAAACAGAGGAAGA
AGGAAAAAGAGGAAACAGGAAAGATAGCATGCTGGCAGCGGCTCTAAAGG
TAGGCGTGAAGCATCGCCATCATCATCGCCCTCACGAGAAGCGGCACCAC
CACCCCTCGCACCACGATAGCCACAACGAGGCGACTGACCCCACCACACC
TCCTCGGGGCCCTGGTCCTGCTGGTCCACTGCGCCGTTTTTCCCCATTTC
CCCTCGTCCGTTCTCTCCTCTTCTATGCTCGCATGTCCATCGAGCTGCCC
TATGTGGTCTACCTTGAGTTCCTTGCCCCCCGTCCCGAGCAGAACCTGTT
CAAGCCCCGGCCGCTGACGGGCCACAAAAACATCGCCTGGCGGGTGGGGC
ATGCTGATGTGGCACGGGTGAAGCGGATTAAGGATGCCTTAGGGGCCAAG
CTGAACGATGTCCTCTTGGCCTGTGTCACGGGAGCCTTGCGGACGATTAT
GCTGGCGCATGGCGGTGGGGAAAAGAAGGATGAAGGGAGGAGCAGCGGCG
GGGGGACTATAGAGGCAAAATCAACGGAGAAGTGTGAAGAGGAAATAATA
GAGCAGCATGGGCAGCAGGACCAGCAGCATGCAACTAGCCCCTCTTCCTC
AGTTTCCTCCTCCTTCTCTTCCACTCCCACCCTCCATTCCTGCTCCCTCG
CCCGTCCTGTGGCCGACACGACCCGATTCTTCGCCCCCATGTCTACCCGC
ACCAATCTGGCCTCCCTCCAGGATCTCGACAACCAGCTCACCGTCCTATC
TATTCCCCTCCCCACGGGCCTGGCCTCCCGCCGTCGCCGCCTCGCTCACA
TTCACCACTTCACTGCGCGCCTCAAGAACTCCACCTTTCCTCTGGGCATG
GCCTTGCTCTCGCGCATCGCTACTTCTTGTCTTCCAGCCCGCCTGCTGGA
AATGCAGAACGATTTCCTGTGCGAAAAAGCGAGCGGTGTGCTCACGAATG
TGCCCGGCCCTGTGCACTTCCGGCAGATGGGCGGCGCTGAGATCGAGGAG
ATCGCGGTATTCGTACCTGCTGTTTCTTCGGTCGGCATGACCCTCGCCAC
CTTCACCTACGGGCAGATGCTCAGCCTGGGGCTGGTGCTGGACCAGGCCG
TGCCGTGCGCTGCGGAGGAGGTGCTGGATGCCTTCATGCATGAGCTGGAC
GCGTACGAGGCGATGGTAGGGGAAGGAGGGAGTGCCAAACGAGAAGGAAA
AGAGGGAGAGAGGTAAAGAGATGGAGGGAGCAACAAGCAGCAGTGCAATT
AGTTACGTGTACAGGCGTGTGCAGGGTCAGAGGCAAGTGTGAATAGCATA
AGAGAACGCGCTCAATGGAGTGCAGTCGGTCTGGGTGCGGATCAGATCCT
TGGCACCACACAGCCGTCATCCCGATTTCGCATGTGGGCAGGCATGTTGC
GTAATTGAGAAAGGAGACGGGAAGAAATGAAGGATTGCGTAGAGAATATG
ATAGGCTGACGCTATGTGAATGCAGCAGTGTGTACATAAGGACCGACAAA
TGCGAGAAATGGAGCGATGACAAATGGGAAACAGCCTGCCGCCCTAGTCA
GAGA
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protein sequence of jgi.p|Nanoce1779_2|607301

>mRNA_9676-protein ID=mRNA_9676-protein|Name=jgi.p|Nanoce1779_2|607301|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MDTPAATSLPSFLSYLRMAWIVIAVALIFILAYLWSLNLCARLCSNYIPG
EEAGHLLSSDGANIPIIHAFLVVKGHITAADMAQVLNQAGIPEKRFQRLK
HCISAEPGHLKPFDRKRGDWPVYWYPEPSFRPENHVRNLPDGLSRVELKN
YLSSIVNTPPSFSVSPWEILVANALDGNDERTALVLRLHHVLGDGLSVLR
LLEAISEPVQGEQETEEEGKRGNRKDSMLAAALKVGVKHRHHHRPHEKRH
HHPSHHDSHNEATDPTTPPRGPGPAGPLRRFSPFPLVRSLLFYARMSIEL
PYVVYLEFLAPRPEQNLFKPRPLTGHKNIAWRVGHADVARVKRIKDALGA
KLNDVLLACVTGALRTIMLAHGGGEKKDEGRSSGGGTIEAKSTEKCEEEI
IEQHGQQDQQHATSPSSSVSSSFSSTPTLHSCSLARPVADTTRFFAPMST
RTNLASLQDLDNQLTVLSIPLPTGLASRRRRLAHIHHFTARLKNSTFPLG
MALLSRIATSCLPARLLEMQNDFLCEKASGVLTNVPGPVHFRQMGGAEIE
EIAVFVPAVSSVGMTLATFTYGQMLSLGLVLDQAVPCAAEEVLDAFMHEL
DAYEAMVGEGGSAKREGKEGER*
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mRNA from alignment at scaffold_38:78312..80615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9676 ID=mRNA_9676|Name=jgi.p|Nanoce1779_2|607301|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp|location=Sequence derived from alignment at scaffold_38:78312..80615- (Nannochloropsis oceanica)
AGGCTTCCATTTCTGTGGCCGCCGGTCAGCACATCACAAGAGTCGAAGCA
GAGCCACCAGCAACACCCCACCTCTCTGCGGCTTGCTGCCACGCACCATG
GATACTCCTGCCGCTACCTCCTTGCCCTCCTTCCTTTCCTACCTCCGCAT
GGCCTGGATTGTCATAGCTGTGGCTCTCATCTTCATTCTCGCATACCTCT
GGAGCCTCAACCTTTGTGCCCGCCTTTGCTCAAACTATATCCCTGGCGAA
GAGGCCGGCCATCTCCTGAGCAGCGATGGCGCCAACATTCCCATAATTCA
CGCCTTCCTCGTCGTCAAGGGCCACATCACAGCTGCAGATATGGCGCAGG
TTCTCAACCAGGCAGGCATTCCCGAAAAGCGGTTCCAGCGCCTTAAGCAC
TGTATTTCGGCGGAGCCCGGTCATCTCAAGCCTTTCGACCGAAAGCGCGG
TGATTGGCCCGTCTACTGGTACCCAGAGCCATCCTTTCGTCCCGAAAACC
ACGTTCGGAATTTACCAGACGGCCTTTCACGGGTGGAACTCAAAAACTAC
TTGAGCAGCATTGTAAATACGCCTCCATCATTTTCCGTCAGTCCATGGGA
AATCCTGGTGGCAAATGCCTTGGACGGTAACGACGAACGAACGGCCTTGG
TGTTGCGACTGCACCATGTGCTCGGCGACGGTCTAAGCGTGCTGAGGCTT
CTCGAGGCCATAAGTGAGCCGGTGCAGGGGGAGCAAGAAACAGAGGAAGA
AGGAAAAAGAGGAAACAGGAAAGATAGCATGCTGGCAGCGGCTCTAAAGG
TAGGCGTGAAGCATCGCCATCATCATCGCCCTCACGAGAAGCGGCACCAC
CACCCCTCGCACCACGATAGCCACAACGAGGCGACTGACCCCACCACACC
TCCTCGGGGCCCTGGTCCTGCTGGTCCACTGCGCCGTTTTTCCCCATTTC
CCCTCGTCCGTTCTCTCCTCTTCTATGCTCGCATGTCCATCGAGCTGCCC
TATGTGGTCTACCTTGAGTTCCTTGCCCCCCGTCCCGAGCAGAACCTGTT
CAAGCCCCGGCCGCTGACGGGCCACAAAAACATCGCCTGGCGGGTGGGGC
ATGCTGATGTGGCACGGGTGAAGCGGATTAAGGATGCCTTAGGGGCCAAG
CTGAACGATGTCCTCTTGGCCTGTGTCACGGGAGCCTTGCGGACGATTAT
GCTGGCGCATGGCGGTGGGGAAAAGAAGGATGAAGGGAGGAGCAGCGGCG
GGGGGACTATAGAGGCAAAATCAACGGAGAAGTGTGAAGAGGAAATAATA
GAGCAGCATGGGCAGCAGGACCAGCAGCATGCAACTAGCCCCTCTTCCTC
AGTTTCCTCCTCCTTCTCTTCCACTCCCACCCTCCATTCCTGCTCCCTCG
CCCGTCCTGTGGCCGACACGACCCGATTCTTCGCCCCCATGTCTACCCGC
ACCAATCTGGCCTCCCTCCAGGATCTCGACAACCAGCTCACCGTCCTATC
TATTCCCCTCCCCACGGGCCTGGCCTCCCGCCGTCGCCGCCTCGCTCACA
TTCACCACTTCACTGCGCGCCTCAAGAACTCCACCTTTCCTCTGGGCATG
GCCTTGCTCTCGCGCATCGCTACTTCTTGTCTTCCAGCCCGCCTGCTGGA
AATGCAGAACGATTTCCTGTGCGAAAAAGCGAGCGGTGTGCTCACGAATG
TGCCCGGCCCTGTGCACTTCCGGCAGATGGGCGGCGCTGAGATCGAGGAG
ATCGCGGTATTCGTACCTGCTGTTTCTTCGGTCGGCATGACCCTCGCCAC
CTTCACCTACGGGCAGATGCTCAGCCTGGGGCTGGTGCTGGACCAGGCCG
TGCCGTGCGCTGCGGAGGAGGTGCTGGATGCCTTCATGCATGAGCTGGAC
GCGTACGAGGCGATGGTAGGGGAAGGAGGGAGTGCCAAACGAGAAGGAAA
AGAGGGAGAGAGGTAAAGAGATGGAGGGAGCAACAAGCAGCAGTGCAATT
AGTTACGTGTACAGGCGTGTGCAGGGTCAGAGGCAAGTGTGAATAGCATA
AGAGAACGCGCTCAATGGAGTGCAGTCGGTCTGGGTGCGGATCAGATCCT
TGGCACCACACAGCCGTCATCCCGATTTCGCATGTGGGCAGGCATGTTGC
GTAATTGAGAAAGGAGACGGGAAGAAATGAAGGATTGCGTAGAGAATATG
ATAGGCTGACGCTATGTGAATGCAGCAGTGTGTACATAAGGACCGACAAA
TGCGAGAAATGGAGCGATGACAAATGGGAAACAGCCTGCCGCCCTAGTCA
GAGA
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Coding sequence (CDS) from alignment at scaffold_38:78312..80615-

>mRNA_9676 ID=mRNA_9676|Name=jgi.p|Nanoce1779_2|607301|organism=Nannochloropsis oceanica|type=CDS|length=1869bp|location=Sequence derived from alignment at scaffold_38:78312..80615- (Nannochloropsis oceanica)
ATGGATACTCCTGCCGCTACCTCCTTGCCCTCCTTCCTTTCCTACCTCCG
CATGGCCTGGATTGTCATAGCTGTGGCTCTCATCTTCATTCTCGCATACC
TCTGGAGCCTCAACCTTTGTGCCCGCCTTTGCTCAAACTATATCCCTGGC
GAAGAGGCCGGCCATCTCCTGAGCAGCGATGGCGCCAACATTCCCATAAT
TCACGCCTTCCTCGTCGTCAAGGGCCACATCACAGCTGCAGATATGGCGC
AGGTTCTCAACCAGGCAGGCATTCCCGAAAAGCGGTTCCAGCGCCTTAAG
CACTGTATTTCGGCGGAGCCCGGTCATCTCAAGCCTTTCGACCGAAAGCG
CGGTGATTGGCCCGTCTACTGGTACCCAGAGCCATCCTTTCGTCCCGAAA
ACCACGTTCGGAATTTACCAGACGGCCTTTCACGGGTGGAACTCAAAAAC
TACTTGAGCAGCATTGTAAATACGCCTCCATCATTTTCCGTCAGTCCATG
GGAAATCCTGGTGGCAAATGCCTTGGACGGTAACGACGAACGAACGGCCT
TGGTGTTGCGACTGCACCATGTGCTCGGCGACGGTCTAAGCGTGCTGAGG
CTTCTCGAGGCCATAAGTGAGCCGGTGCAGGGGGAGCAAGAAACAGAGGA
AGAAGGAAAAAGAGGAAACAGGAAAGATAGCATGCTGGCAGCGGCTCTAA
AGGTAGGCGTGAAGCATCGCCATCATCATCGCCCTCACGAGAAGCGGCAC
CACCACCCCTCGCACCACGATAGCCACAACGAGGCGACTGACCCCACCAC
ACCTCCTCGGGGCCCTGGTCCTGCTGGTCCACTGCGCCGTTTTTCCCCAT
TTCCCCTCGTCCGTTCTCTCCTCTTCTATGCTCGCATGTCCATCGAGCTG
CCCTATGTGGTCTACCTTGAGTTCCTTGCCCCCCGTCCCGAGCAGAACCT
GTTCAAGCCCCGGCCGCTGACGGGCCACAAAAACATCGCCTGGCGGGTGG
GGCATGCTGATGTGGCACGGGTGAAGCGGATTAAGGATGCCTTAGGGGCC
AAGCTGAACGATGTCCTCTTGGCCTGTGTCACGGGAGCCTTGCGGACGAT
TATGCTGGCGCATGGCGGTGGGGAAAAGAAGGATGAAGGGAGGAGCAGCG
GCGGGGGGACTATAGAGGCAAAATCAACGGAGAAGTGTGAAGAGGAAATA
ATAGAGCAGCATGGGCAGCAGGACCAGCAGCATGCAACTAGCCCCTCTTC
CTCAGTTTCCTCCTCCTTCTCTTCCACTCCCACCCTCCATTCCTGCTCCC
TCGCCCGTCCTGTGGCCGACACGACCCGATTCTTCGCCCCCATGTCTACC
CGCACCAATCTGGCCTCCCTCCAGGATCTCGACAACCAGCTCACCGTCCT
ATCTATTCCCCTCCCCACGGGCCTGGCCTCCCGCCGTCGCCGCCTCGCTC
ACATTCACCACTTCACTGCGCGCCTCAAGAACTCCACCTTTCCTCTGGGC
ATGGCCTTGCTCTCGCGCATCGCTACTTCTTGTCTTCCAGCCCGCCTGCT
GGAAATGCAGAACGATTTCCTGTGCGAAAAAGCGAGCGGTGTGCTCACGA
ATGTGCCCGGCCCTGTGCACTTCCGGCAGATGGGCGGCGCTGAGATCGAG
GAGATCGCGGTATTCGTACCTGCTGTTTCTTCGGTCGGCATGACCCTCGC
CACCTTCACCTACGGGCAGATGCTCAGCCTGGGGCTGGTGCTGGACCAGG
CCGTGCCGTGCGCTGCGGAGGAGGTGCTGGATGCCTTCATGCATGAGCTG
GACGCGTACGAGGCGATGGTAGGGGAAGGAGGGAGTGCCAAACGAGAAGG
AAAAGAGGGAGAGAGGTAA
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Synonyms
Publications