jgi.p|Nanoce1779_2|538405, mRNA_2219 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|538405
Unique NamemRNA_2219
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1506
Alignment locationscaffold_4:1081223..1082728 -

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Properties
Property NameValue
TranscriptId538491
TrackFilteredModels2
ProteinId538405
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1081223..1082728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538405gene_2219Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538405mRNA_2219-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2219CDS_2219Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2219 ID=mRNA_2219|Name=jgi.p|Nanoce1779_2|538405|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp
GTGGGGGAGAACATGGAGCCAGAGGGAGGTATGAAACCAGAATCTGGCAG
CAGCAGTTCCGCTGCTGCTGCGTCATCATCCTCGGGTGGCGGCAGTGGTG
CGGAGGCACAGGAAGAGAAGGAAGAAAAGGAAGAAGAGGAAGGAGAGGAG
GCAACAAAGGTGGTCATTCCCGAAGATGTGCAAGATGACTTGGAGGTGGC
TTGGGAGAACTTAGAGGCGGCGCGTGTGATCTACCATAAGCATGAGGGAG
TGGTTGATATTGACCCCAAGCGAATTGGAGAGGTTTATTTGAGGTTAGGG
GACCTGCAAAAAAACAATGGCAACTTTAGCCAGGCTGTGGAAGATTACCT
GAGGAGCCTGGGCATATATGGGAAGGTGTGTGGAGAGGATAGCCGAGTGA
TTGCCGAGTTACATTATCAGTTGGCGATGACGTATATTTATGCGTCGGGC
GTTGGAGGAGGGGGAGGAGAGGGAGGAGGGGAGGGAGCAGTGGGTTTGAA
GAAGAAGGCCCTGGAGCATTACGAGAGGTGCGCGCGGGTATTTGAGTTGT
TGGTGTCCAAGGCGCAGGCGGACGTAGCAACAGCAGGCGAAAGAGGTGGA
GGGGAGGAGGAGAAGGGGAAGGGGAAGGCATCTGCGACAACAACGCCGAT
AAAGACAAGCCCAGCGGAAAACTTGAAAGAGTTCACAGAGATCTTGGATG
AGCTCAAAGAGACGATCGAAGCGACCAAGCATGAGATACTGGCGGCAAGT
GATCCAATGAATGAAGGCGAGAGGGCGAGGACGAGGGCCGTGACTACTGT
GGGCTTTGATGCCCCGTCTTGTTCTGTTGCTGCTGCTGCAGACGCTGCGG
TAGCTGGAGATGGAGATGGGAAGGGAGGAGGAGCGAGCAGCAATGGCGCA
GTAGCCAATGTGATGATGACAGTGAAGAAAAAGGCCAAGCCCGCAACTGC
TGCTCCTGCGGCTCCTGCTGCCCCTGCTCCTGTGGAGCCTGAGAAGAAAA
AGGAGGAATCGGTGCTGGTGGAAGAGCAGAAGCAACAGCAGCTGGACAAG
ATGGAGGGGAAAAGCAGCCCAAAAAAGCGGTTGGCGACGGAGCAAACAGA
GGGGCCCGCGGAGCTACCCCTGGCCAAGGAGGCACGGGCGGAGTAGAAAG
AGGAATGATGAAGTGGGACGCTACAAAGAGGGGGGTGGGGGGGAATGGGG
TGGAAATGATGAAGGTTAGAATATAGAACTACTCGAAAAGAAATTTGGAA
GGAGTTTTTCCATGGCATACACCTTGAATGGAATGAATTTCAAACGCGAA
AGTCAGCGAAGACTCGGGAAGGGAATTAAGGGGGGGGAAAAGCAAGTGAA
CAGTCAGGAGATCCATCCACATAGCGAACCAGCCAGCACACACACAAACA
GAAAATTGAGGAAGAAATAAGAAAAACAAGAGCCTCATAAGAAGGTATAA
AACCAACATATCGCTTTCTACCTGATTGATGCATAGCATGGCACCACGAA
GATGTC
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protein sequence of jgi.p|Nanoce1779_2|538405

>mRNA_2219-protein ID=mRNA_2219-protein|Name=jgi.p|Nanoce1779_2|538405|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MEPEGGMKPESGSSSSAAAASSSSGGGSGAEAQEEKEEKEEEEGEEATKV
VIPEDVQDDLEVAWENLEAARVIYHKHEGVVDIDPKRIGEVYLRLGDLQK
NNGNFSQAVEDYLRSLGIYGKVCGEDSRVIAELHYQLAMTYIYASGVGGG
GGEGGGEGAVGLKKKALEHYERCARVFELLVSKAQADVATAGERGGGEEE
KGKGKASATTTPIKTSPAENLKEFTEILDELKETIEATKHEILAASDPMN
EGERARTRAVTTVGFDAPSCSVAAAADAAVAGDGDGKGGGASSNGAVANV
MMTVKKKAKPATAAPAAPAAPAPVEPEKKKEESVLVEEQKQQQLDKMEGK
SSPKKRLATEQTEGPAELPLAKEARAE*
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mRNA from alignment at scaffold_4:1081223..1082728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2219 ID=mRNA_2219|Name=jgi.p|Nanoce1779_2|538405|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp|location=Sequence derived from alignment at scaffold_4:1081223..1082728- (Nannochloropsis oceanica)
GTGGGGGAGAACATGGAGCCAGAGGGAGGTATGAAACCAGAATCTGGCAG
CAGCAGTTCCGCTGCTGCTGCGTCATCATCCTCGGGTGGCGGCAGTGGTG
CGGAGGCACAGGAAGAGAAGGAAGAAAAGGAAGAAGAGGAAGGAGAGGAG
GCAACAAAGGTGGTCATTCCCGAAGATGTGCAAGATGACTTGGAGGTGGC
TTGGGAGAACTTAGAGGCGGCGCGTGTGATCTACCATAAGCATGAGGGAG
TGGTTGATATTGACCCCAAGCGAATTGGAGAGGTTTATTTGAGGTTAGGG
GACCTGCAAAAAAACAATGGCAACTTTAGCCAGGCTGTGGAAGATTACCT
GAGGAGCCTGGGCATATATGGGAAGGTGTGTGGAGAGGATAGCCGAGTGA
TTGCCGAGTTACATTATCAGTTGGCGATGACGTATATTTATGCGTCGGGC
GTTGGAGGAGGGGGAGGAGAGGGAGGAGGGGAGGGAGCAGTGGGTTTGAA
GAAGAAGGCCCTGGAGCATTACGAGAGGTGCGCGCGGGTATTTGAGTTGT
TGGTGTCCAAGGCGCAGGCGGACGTAGCAACAGCAGGCGAAAGAGGTGGA
GGGGAGGAGGAGAAGGGGAAGGGGAAGGCATCTGCGACAACAACGCCGAT
AAAGACAAGCCCAGCGGAAAACTTGAAAGAGTTCACAGAGATCTTGGATG
AGCTCAAAGAGACGATCGAAGCGACCAAGCATGAGATACTGGCGGCAAGT
GATCCAATGAATGAAGGCGAGAGGGCGAGGACGAGGGCCGTGACTACTGT
GGGCTTTGATGCCCCGTCTTGTTCTGTTGCTGCTGCTGCAGACGCTGCGG
TAGCTGGAGATGGAGATGGGAAGGGAGGAGGAGCGAGCAGCAATGGCGCA
GTAGCCAATGTGATGATGACAGTGAAGAAAAAGGCCAAGCCCGCAACTGC
TGCTCCTGCGGCTCCTGCTGCCCCTGCTCCTGTGGAGCCTGAGAAGAAAA
AGGAGGAATCGGTGCTGGTGGAAGAGCAGAAGCAACAGCAGCTGGACAAG
ATGGAGGGGAAAAGCAGCCCAAAAAAGCGGTTGGCGACGGAGCAAACAGA
GGGGCCCGCGGAGCTACCCCTGGCCAAGGAGGCACGGGCGGAGTAGAAAG
AGGAATGATGAAGTGGGACGCTACAAAGAGGGGGGTGGGGGGGAATGGGG
TGGAAATGATGAAGGTTAGAATATAGAACTACTCGAAAAGAAATTTGGAA
GGAGTTTTTCCATGGCATACACCTTGAATGGAATGAATTTCAAACGCGAA
AGTCAGCGAAGACTCGGGAAGGGAATTAAGGGGGGGGAAAAGCAAGTGAA
CAGTCAGGAGATCCATCCACATAGCGAACCAGCCAGCACACACACAAACA
GAAAATTGAGGAAGAAATAAGAAAAACAAGAGCCTCATAAGAAGGTATAA
AACCAACATATCGCTTTCTACCTGATTGATGCATAGCATGGCACCACGAA
GATGTC
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Coding sequence (CDS) from alignment at scaffold_4:1081223..1082728-

>mRNA_2219 ID=mRNA_2219|Name=jgi.p|Nanoce1779_2|538405|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_4:1081223..1082728- (Nannochloropsis oceanica)
ATGGAGCCAGAGGGAGGTATGAAACCAGAATCTGGCAGCAGCAGTTCCGC
TGCTGCTGCGTCATCATCCTCGGGTGGCGGCAGTGGTGCGGAGGCACAGG
AAGAGAAGGAAGAAAAGGAAGAAGAGGAAGGAGAGGAGGCAACAAAGGTG
GTCATTCCCGAAGATGTGCAAGATGACTTGGAGGTGGCTTGGGAGAACTT
AGAGGCGGCGCGTGTGATCTACCATAAGCATGAGGGAGTGGTTGATATTG
ACCCCAAGCGAATTGGAGAGGTTTATTTGAGGTTAGGGGACCTGCAAAAA
AACAATGGCAACTTTAGCCAGGCTGTGGAAGATTACCTGAGGAGCCTGGG
CATATATGGGAAGGTGTGTGGAGAGGATAGCCGAGTGATTGCCGAGTTAC
ATTATCAGTTGGCGATGACGTATATTTATGCGTCGGGCGTTGGAGGAGGG
GGAGGAGAGGGAGGAGGGGAGGGAGCAGTGGGTTTGAAGAAGAAGGCCCT
GGAGCATTACGAGAGGTGCGCGCGGGTATTTGAGTTGTTGGTGTCCAAGG
CGCAGGCGGACGTAGCAACAGCAGGCGAAAGAGGTGGAGGGGAGGAGGAG
AAGGGGAAGGGGAAGGCATCTGCGACAACAACGCCGATAAAGACAAGCCC
AGCGGAAAACTTGAAAGAGTTCACAGAGATCTTGGATGAGCTCAAAGAGA
CGATCGAAGCGACCAAGCATGAGATACTGGCGGCAAGTGATCCAATGAAT
GAAGGCGAGAGGGCGAGGACGAGGGCCGTGACTACTGTGGGCTTTGATGC
CCCGTCTTGTTCTGTTGCTGCTGCTGCAGACGCTGCGGTAGCTGGAGATG
GAGATGGGAAGGGAGGAGGAGCGAGCAGCAATGGCGCAGTAGCCAATGTG
ATGATGACAGTGAAGAAAAAGGCCAAGCCCGCAACTGCTGCTCCTGCGGC
TCCTGCTGCCCCTGCTCCTGTGGAGCCTGAGAAGAAAAAGGAGGAATCGG
TGCTGGTGGAAGAGCAGAAGCAACAGCAGCTGGACAAGATGGAGGGGAAA
AGCAGCCCAAAAAAGCGGTTGGCGACGGAGCAAACAGAGGGGCCCGCGGA
GCTACCCCTGGCCAAGGAGGCACGGGCGGAGTAG
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Synonyms
Publications