jgi.p|Nanoce1779_2|578600, mRNA_1975 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578600
Unique NamemRNA_1975
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1119
Alignment locationscaffold_4:477133..478251 +

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Properties
Property NameValue
TranscriptId578686
TrackFilteredModels2
ProteinId578600
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:477133..478251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578600gene_1975Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578600mRNA_1975-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1975CDS_1975Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1975 ID=mRNA_1975|Name=jgi.p|Nanoce1779_2|578600|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp
AGCATCCACATCACAGACACGGTAACAACAAGGTCGACCGAAAGGCCATG
CAAAAAGATGGAGGAGCCGCAGGAACAGGAAAGCATTACGGCACGACGCA
ACGAGGAAGTCGAAAGCCTGCTGCTCATCTACACCGAGGATTTGGTCAAG
GTTATGCAACAAGGGGACGAATATTTGGTGGAGATCAAACTGGGCAAGGC
CGAGAATGACGAGAATTCCAGGACGGTGGTCCTCAAGATCTACTTGCCTC
CTTCGTATCCTTCCCCTGGTGCGGAGATGCCGTGCTTTGAGCTGCGAGGG
ATTAATTGGTCAAATCCCATGCACGATCAGGCGCACATTTACGATGGATT
GCGAGATATTTTTCATAACCAAGCGGGAGAAGTGATCCTGTTCCCGTGGT
GTGAATGGCTAAAGGAGGAGCTGCATTTGCTGCCCATCACGCACAGCACC
GCCGCGGAGGAGGGAAGCGGGGAGAAAGGAGATAACCATGACAGCCATGA
CTGTGAGCATATAATCAACAACGGTAGTGTTCTCACCCCGCAGGCAGCAG
CAAGACGACACGGTTTAGAGCTTATACACGGCGTGCCCTTCACTGAACGA
AAAAGCACGTTCCAGGCCCACTTGGCACGCATTACCACCGAAAAAGACGC
CCGCACCGTTATTGAATGCCTCCTCCTCGATCGGAAAATCCAACGGGCAT
CGCATAATATGTACGCGTTTCGTGTTTTCGATGTAAAGAAACAAGCTCAG
GTGAATGATAATGATGACGACGGCGAAAATGCTGCAGGGGGGAAACTTGC
TGAATTGATAGCTGTGATGGGTGTGAACAATGTGGTGATTGTGGTGAGTC
GGTGGTGGGGGGGTGTGCTACTGGGCCCGTCAAGATTTCGAGTGATTAAC
AATACAGCAAGGCAGTTGTTGGAGCAGTGCGGGATGGATAGGAAGGAGCG
AGGGATGGGAAAGGAGGAGGAGGGAGCGGGACATCATCATCGGCGTTTGA
AGGGAGTAAATGGTTGTAAATGAGAAAGATGTGAGGAGAGACGAGAGATT
GTTAGGACGTCATCTGACTTGTGCGTTATGAACTAGCAAATAATGTAAAC
AACAAATTACCACAAGACA
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protein sequence of jgi.p|Nanoce1779_2|578600

>mRNA_1975-protein ID=mRNA_1975-protein|Name=jgi.p|Nanoce1779_2|578600|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MEEPQEQESITARRNEEVESLLLIYTEDLVKVMQQGDEYLVEIKLGKAEN
DENSRTVVLKIYLPPSYPSPGAEMPCFELRGINWSNPMHDQAHIYDGLRD
IFHNQAGEVILFPWCEWLKEELHLLPITHSTAAEEGSGEKGDNHDSHDCE
HIINNGSVLTPQAAARRHGLELIHGVPFTERKSTFQAHLARITTEKDART
VIECLLLDRKIQRASHNMYAFRVFDVKKQAQVNDNDDDGENAAGGKLAEL
IAVMGVNNVVIVVSRWWGGVLLGPSRFRVINNTARQLLEQCGMDRKERGM
GKEEEGAGHHHRRLKGVNGCK*
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mRNA from alignment at scaffold_4:477133..478251+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1975 ID=mRNA_1975|Name=jgi.p|Nanoce1779_2|578600|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp|location=Sequence derived from alignment at scaffold_4:477133..478251+ (Nannochloropsis oceanica)
AGCATCCACATCACAGACACGGTAACAACAAGGTCGACCGAAAGGCCATG
CAAAAAGATGGAGGAGCCGCAGGAACAGGAAAGCATTACGGCACGACGCA
ACGAGGAAGTCGAAAGCCTGCTGCTCATCTACACCGAGGATTTGGTCAAG
GTTATGCAACAAGGGGACGAATATTTGGTGGAGATCAAACTGGGCAAGGC
CGAGAATGACGAGAATTCCAGGACGGTGGTCCTCAAGATCTACTTGCCTC
CTTCGTATCCTTCCCCTGGTGCGGAGATGCCGTGCTTTGAGCTGCGAGGG
ATTAATTGGTCAAATCCCATGCACGATCAGGCGCACATTTACGATGGATT
GCGAGATATTTTTCATAACCAAGCGGGAGAAGTGATCCTGTTCCCGTGGT
GTGAATGGCTAAAGGAGGAGCTGCATTTGCTGCCCATCACGCACAGCACC
GCCGCGGAGGAGGGAAGCGGGGAGAAAGGAGATAACCATGACAGCCATGA
CTGTGAGCATATAATCAACAACGGTAGTGTTCTCACCCCGCAGGCAGCAG
CAAGACGACACGGTTTAGAGCTTATACACGGCGTGCCCTTCACTGAACGA
AAAAGCACGTTCCAGGCCCACTTGGCACGCATTACCACCGAAAAAGACGC
CCGCACCGTTATTGAATGCCTCCTCCTCGATCGGAAAATCCAACGGGCAT
CGCATAATATGTACGCGTTTCGTGTTTTCGATGTAAAGAAACAAGCTCAG
GTGAATGATAATGATGACGACGGCGAAAATGCTGCAGGGGGGAAACTTGC
TGAATTGATAGCTGTGATGGGTGTGAACAATGTGGTGATTGTGGTGAGTC
GGTGGTGGGGGGGTGTGCTACTGGGCCCGTCAAGATTTCGAGTGATTAAC
AATACAGCAAGGCAGTTGTTGGAGCAGTGCGGGATGGATAGGAAGGAGCG
AGGGATGGGAAAGGAGGAGGAGGGAGCGGGACATCATCATCGGCGTTTGA
AGGGAGTAAATGGTTGTAAATGAGAAAGATGTGAGGAGAGACGAGAGATT
GTTAGGACGTCATCTGACTTGTGCGTTATGAACTAGCAAATAATGTAAAC
AACAAATTACCACAAGACA
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Coding sequence (CDS) from alignment at scaffold_4:477133..478251+

>mRNA_1975 ID=mRNA_1975|Name=jgi.p|Nanoce1779_2|578600|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_4:477133..478251+ (Nannochloropsis oceanica)
ATGGAGGAGCCGCAGGAACAGGAAAGCATTACGGCACGACGCAACGAGGA
AGTCGAAAGCCTGCTGCTCATCTACACCGAGGATTTGGTCAAGGTTATGC
AACAAGGGGACGAATATTTGGTGGAGATCAAACTGGGCAAGGCCGAGAAT
GACGAGAATTCCAGGACGGTGGTCCTCAAGATCTACTTGCCTCCTTCGTA
TCCTTCCCCTGGTGCGGAGATGCCGTGCTTTGAGCTGCGAGGGATTAATT
GGTCAAATCCCATGCACGATCAGGCGCACATTTACGATGGATTGCGAGAT
ATTTTTCATAACCAAGCGGGAGAAGTGATCCTGTTCCCGTGGTGTGAATG
GCTAAAGGAGGAGCTGCATTTGCTGCCCATCACGCACAGCACCGCCGCGG
AGGAGGGAAGCGGGGAGAAAGGAGATAACCATGACAGCCATGACTGTGAG
CATATAATCAACAACGGTAGTGTTCTCACCCCGCAGGCAGCAGCAAGACG
ACACGGTTTAGAGCTTATACACGGCGTGCCCTTCACTGAACGAAAAAGCA
CGTTCCAGGCCCACTTGGCACGCATTACCACCGAAAAAGACGCCCGCACC
GTTATTGAATGCCTCCTCCTCGATCGGAAAATCCAACGGGCATCGCATAA
TATGTACGCGTTTCGTGTTTTCGATGTAAAGAAACAAGCTCAGGTGAATG
ATAATGATGACGACGGCGAAAATGCTGCAGGGGGGAAACTTGCTGAATTG
ATAGCTGTGATGGGTGTGAACAATGTGGTGATTGTGGTGAGTCGGTGGTG
GGGGGGTGTGCTACTGGGCCCGTCAAGATTTCGAGTGATTAACAATACAG
CAAGGCAGTTGTTGGAGCAGTGCGGGATGGATAGGAAGGAGCGAGGGATG
GGAAAGGAGGAGGAGGGAGCGGGACATCATCATCGGCGTTTGAAGGGAGT
AAATGGTTGTAAATGA
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Synonyms
Publications