jgi.p|Nanoce1779_2|579497, mRNA_2214 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579497
Unique NamemRNA_2214
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length667
Alignment locationscaffold_4:1071186..1071852 +

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Properties
Property NameValue
TranscriptId579583
TrackFilteredModels2
ProteinId579497
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1071186..1071852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579497gene_2214Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579497mRNA_2214-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2214CDS_2214Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2214 ID=mRNA_2214|Name=jgi.p|Nanoce1779_2|579497|organism=Nannochloropsis oceanica|type=mRNA|length=667bp
CCCACGCTCGCTCACACAGATTCAGGACATGTGTTGAGTCGTCATGCTCC
TCCTCCGCCTGTTCTTCCTCCTCCTCCTCCTTTTCCTGCTTCCCCTGCCC
CTTTCCGCTTCCCATGAACCTCAAGACTGTATTAAATCAACCATTCAAAT
TGTTCTCCCTTTATCGTTATTTCTCCTCCACCATCACCACCTCCACCACA
CTCGCCTGTATCTTGAAACAGCTGCGTCATCACAGCCAGGTTTTGCTGCC
CCTCCTTCTCAACCTCCTTCATCCTACCCTCTCCCTTTCCCTCTCGTCCA
CATCCATCTCCATCTGTCTACATCTTCTTCTTGCTCTCTCCCTCCTCTTC
CTCCTCCTGCTGTTCCCCTGCTTCCTTCTTCTGTTCCCATGCATCTAATC
TCGCCATCGAATCGCCCGCAGGACAGTCCTGATTTCCTCTTCCTCCCTCC
CTTTCTTCCCCTCTTCCTCCTCGTCCAACCGCGCTGCCTTGCCTGCCAAA
AAGGAGGGGATATGCAGCAGAGGAAGAGGAAGAGGAGGAGGAGGAGAAGA
AGGAGGAGAAGGAGGAGGAGGATGAAGAAGAAGAAGAAGAAGAAGAGGAG
GAAGAAGAGGATGAAAAGAAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGA
GAAGGAGGAGGAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|579497

>mRNA_2214-protein ID=mRNA_2214-protein|Name=jgi.p|Nanoce1779_2|579497|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MNLKTVLNQPFKLFSLYRYFSSTITTSTTLACILKQLRHHSQVLLPLLLN
LLHPTLSLSLSSTSISICLHLLLALSLLFLLLLFPCFLLLFPCI*
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mRNA from alignment at scaffold_4:1071186..1071852+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2214 ID=mRNA_2214|Name=jgi.p|Nanoce1779_2|579497|organism=Nannochloropsis oceanica|type=mRNA|length=667bp|location=Sequence derived from alignment at scaffold_4:1071186..1071852+ (Nannochloropsis oceanica)
CCCACGCTCGCTCACACAGATTCAGGACATGTGTTGAGTCGTCATGCTCC
TCCTCCGCCTGTTCTTCCTCCTCCTCCTCCTTTTCCTGCTTCCCCTGCCC
CTTTCCGCTTCCCATGAACCTCAAGACTGTATTAAATCAACCATTCAAAT
TGTTCTCCCTTTATCGTTATTTCTCCTCCACCATCACCACCTCCACCACA
CTCGCCTGTATCTTGAAACAGCTGCGTCATCACAGCCAGGTTTTGCTGCC
CCTCCTTCTCAACCTCCTTCATCCTACCCTCTCCCTTTCCCTCTCGTCCA
CATCCATCTCCATCTGTCTACATCTTCTTCTTGCTCTCTCCCTCCTCTTC
CTCCTCCTGCTGTTCCCCTGCTTCCTTCTTCTGTTCCCATGCATCTAATC
TCGCCATCGAATCGCCCGCAGGACAGTCCTGATTTCCTCTTCCTCCCTCC
CTTTCTTCCCCTCTTCCTCCTCGTCCAACCGCGCTGCCTTGCCTGCCAAA
AAGGAGGGGATATGCAGCAGAGGAAGAGGAAGAGGAGGAGGAGGAGAAGA
AGGAGGAGAAGGAGGAGGAGGATGAAGAAGAAGAAGAAGAAGAAGAGGAG
GAAGAAGAGGATGAAAAGAAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGA
GAAGGAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at scaffold_4:1071186..1071852+

>mRNA_2214 ID=mRNA_2214|Name=jgi.p|Nanoce1779_2|579497|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_4:1071186..1071852+ (Nannochloropsis oceanica)
ATGAACCTCAAGACTGTATTAAATCAACCATTCAAATTGTTCTCCCTTTA
TCGTTATTTCTCCTCCACCATCACCACCTCCACCACACTCGCCTGTATCT
TGAAACAGCTGCGTCATCACAGCCAGGTTTTGCTGCCCCTCCTTCTCAAC
CTCCTTCATCCTACCCTCTCCCTTTCCCTCTCGTCCACATCCATCTCCAT
CTGTCTACATCTTCTTCTTGCTCTCTCCCTCCTCTTCCTCCTCCTGCTGT
TCCCCTGCTTCCTTCTTCTGTTCCCATGCATCTAA
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Synonyms
Publications